ViewGene
Locus Name:
GeneID:
Location:

GeneID:1548
TrivialName: PA14_65250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65250
PAO1 Ortholog Locus:PA4939
Sequence Length:1185
Protein Length:394
Start: 5815991
Stop: 5814807
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08324.1|AE004907_2 (AE004907) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 394/394 (100%), Positives = 394/394 (100%)
Sequence:
ATGGCAACGGTAGACCGCTGGCTGCTGCCAGATGGGATCGAAGAGGTGCTGCCCCCGGAGGCGGCGCGCATC
GAAGCAGCCCGCCGTCAGGTGCTGGATCTGTTCCACCGCTGGGGTTACGAGTTCGTCGTGACCCCGCATATC
GAATACCTGGAGTCGCTGCTCACCGGCGCGGGACAGGATCTTGACCTGCGCACCTTCAAGGTGACCGACCCG
GCGTCCGGCCGGCTCATGGGTTTCCGTGCCGACATTACGCCGCAAGTGGCGCGGATGGATGCGCACAGCCTG
CGCCGCGAGGGACCGAGCCGCCTGTGCTATGCCGGCAGTGTGCTGCATGCGCAGCCGCGCGCGCTGTCCACT
TCGCGTAGTCCGATCCAGCTGGGCGCCGAGCTGTACGGCGATCCGAGCCCTGCCAGCGATGTCGAGGTGATC
AGCCTGATGCTGGAAATGCTCGAGATGGCGGAAGTGCCGGACGTGCACATGGACCTCGGCCATGTCGGTATC
TACCGCGGCCTGGCGCGCGCGGCAGGGCTGTCCGGCGAAGTCGAGCAGCAGTTGTTCGATGCCTTGCAGCGC
AAGGCGGTGGACGAGGTCGAGGCGCTGACTGCAGACCTGCCTGCCGAGCTGCGCGGCATGTTGCGTGCGCTG
GCCGAGCTATGCGGCGGCCGCGATGCGCTGGAGCAGGGCCGTGCCCGTCTGGCGGCGGCGCCGGCCGATGTC
CAGGTGGCGCTGAACGAGCTGATCGAGATCGCCGATTCGCTGGCTGGACGTTTCCCCGGCTTGCCGCTGTAT
TTCGACCTCGGCGAGCTGCGTGGCTATCACTATCACACCGGCGTGGTGTTTGCGGCCTTCGTGCCCGGCGTT
GGCCAGTCCATCGCCCAGGGCGGTCGCTATGATGATATCGGTGCCGATTTCGGGCGCGCCCGCCCGGCCACC
GGTTTCTCCACCGATCTGAAAAGCCTGGTCACTCTCGGCCAGGCCCGGTTGGACCAGGCTGTATCGGGTATC
TGGGCGCCGGCCGAAGGGGCCGGGCTCTGGCAGGCGGTGCAACGACTGCGCCGCGACGGGCAGCGTGTCGTC
CAGGCTCTGCCCGGGCAGGATGCGGCTTCTGCGCGCGAGGCGGGCTGCGACCGGCAGCTGGCGCTGCGCGAT
GGCAATTGGCAGGTGGCGCCGCTGGCGTCCTGA
Translation:
MATVDRWLLPDGIEEVLPPEAARIEAARRQVLDLFHRWGYEFVVTPHIEYLESLLTGAGQDLDLRTFKVTDP
ASGRLMGFRADITPQVARMDAHSLRREGPSRLCYAGSVLHAQPRALSTSRSPIQLGAELYGDPSPASDVEVI
SLMLEMLEMAEVPDVHMDLGHVGIYRGLARAAGLSGEVEQQLFDALQRKAVDEVEALTADLPAELRGMLRAL
AELCGGRDALEQGRARLAAAPADVQVALNELIEIADSLAGRFPGLPLYFDLGELRGYHYHTGVVFAAFVPGV
GQSIAQGGRYDDIGADFGRARPATGFSTDLKSLVTLGQARLDQAVSGIWAPAEGAGLWQAVQRLRRDGQRVV
QALPGQDAASAREAGCDRQLALRDGNWQVAPLAS*
AnnotationID:1557GeneID:1548
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 14:02:47
Gene Name:
Confidence Code:3
GeneProduct:putative ATP phosphoribosyltransferase
Cell Localization:()
Synonyms:hisX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative histidyl-tRNA synthetase
Functional Category Confidence Code:5
COGs:COG3705,cd00773
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58366.1| (AE016873) ATP phosphoribosyltransferase regulatory subunit,
           putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 395

 Score =  633 bits (1632), Expect = 0.0
 Identities = 321/395 (81%), Positives = 345/395 (87%), Gaps = 1/395 (0%)

>gb|AAN70457.1|AE016687_4 (AE016792) histidyl-tRNA synthetase, putative [Pseudomonas putida
           KT2440]
          Length = 395

 Score =  630 bits (1625), Expect = e-180
 Identities = 318/394 (80%), Positives = 340/394 (86%), Gaps = 1/394 (0%)

>gb|AAC46133.1| (AF010189) HisX [Pseudomonas stutzeri]
          Length = 395

 Score =  612 bits (1579), Expect = e-175
 Identities = 306/395 (77%), Positives = 340/395 (86%), Gaps = 1/395 (0%)








 
Structural Features:
COG3705, HisZ, ATP phosphoribosyltransferase involved in histidine biosynthesis 
[Amino acid transport and metabolism]
CD-Length = 390 residues,  99.2% aligned
Score =  336 bits (864), Expect = 2e-93
Identities = 158/393 (40%), Positives = 198/393 (50%), Gaps = 12/393 (3%)

cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase (HisRS)-like 
catalytic core domain.
CD-Length = 309 residues,  99.4% aligned
Score =  202 bits (514), Expect = 9e-53








   
Genomic Context:






   
Comment:


















    ReferenceID:3099




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20246




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35143




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1548_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1548
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2748
                           PA4939_tr
                           translation of PA4939
                           394
                           99.99
                           99.99
                           0
                           2012.0
     

     
     
86307
                           gb|AAG08324.1|AE004907_2
                           (AE004907) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           394
                           99.99
                           99.99
                           0
                           2012.0
     

     
     
86308
                           gb|AAO58366.1|
                           (AE016873) ATP phosphoribosyltransferase regulatory subunit, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           395
                           81.26
                           87.34
                           1
                           1634.0
     

     
     
86309
                           gb|AAN70457.1|AE016687_4
                           (AE016792) histidyl-tRNA synthetase, putative [Pseudomonas putida KT2440]
                           395
                           80.50
                           86.07
                           1
                           1627.0
     

     
     
86310
                           gb|AAC46133.1|
                           (AF010189) HisX [Pseudomonas stutzeri]
                           395
                           77.46
                           86.07
                           1
                           1581.0
     

     






      

          
GC ORFID: 44550How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4939Glimmer Score: 

          
Start: 5079672Stop: 5078488

          
Length: 1185


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4939 translation of PA4939Homolog Bit Score 779.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3434 (ORF: BLASTX 635.0), t_PA4939 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAACGGTAGACCGCTGGCTGCTGCCAGATGGGATCGAAGAGGTGCTGCCCCCGGAGGCGGCGCGCATC 
GAAGCAGCCCGCCGTCAGGTGCTGGATCTGTTCCACCGCTGGGGTTACGAGTTCGTCGTGACCCCGCATATC 
GAATACCTGGAGTCGCTGCTCACCGGCGCGGGACAGGATCTTGACCTGCGCACCTTCAAGGTGACCGACCCG 
GCGTCCGGCCGGCTCATGGGTTTCCGTGCCGACATTACGCCGCAAGTGGCGCGGATGGATGCGCACAGCCTG 
CGCCGCGAGGGACCGAGCCGCCTGTGCTATGCCGGCAGTGTGCTGCATGCGCAGCCGCGCGCGCTGTCCACT 
TCGCGTAGTCCGATCCAGCTGGGCGCCGAGCTGTACGGCGATCCGAGCCCTGCCAGCGATGTCGAGGTGATC 
AGCCTGATGCTGGAAATGCTCGAGATGGCGGAAGTGCCGGACGTGCACATGGACCTCGGCCATGTCGGTATC 
TACCGCGGCCTGGCGCGCGCGGCAGGGCTGTCCGGCGAAGTCGAGCAGCAGTTGTTCGATGCCTTGCAGCGC 
AAGGCGGTGGACGAGGTCGAGGCGCTGACTGCAGACCTGCCTGCCGAGCTGCGCGGCATGTTGCGTGCGCTG 
GCCGAGCTATGCGGCGGCCGCGATGCGCTGGAGCAGGGCCGTGCCCGTCTGGCGGCGGCGCCGGCCGATGTC 
CAGGTGGCGCTGAACGAGCTGATCGAGATCGCCGATTCGCTGGCTGGACGTTTCCCCGGCTTGCCGCTGTAT 
TTCGACCTCGGCGAGCTGCGTGGCTATCACTATCACACCGGCGTGGTGTTTGCGGCCTTCGTGCCCGGCGTT 
GGCCAGTCCATCGCCCAGGGCGGTCGCTATGATGATATCGGTGCCGATTTCGGGCGCGCCCGCCCGGCCACC 
GGTTTCTCCACCGATCTGAAAAGCCTGGTCACTCTCGGCCAGGCCCGGTTGGACCAGGCTGTATCGGGTATC 
TGGGCGCCGGCCGAAGGGGCCGGGCTCTGGCAGGCGGTGCAACGACTGCGCCGCGACGGGCAGCGTGTCGTC 
CAGGCTCTGCCCGGGCAGGATGCGGCTTCTGCGCGCGAGGCGGGCTGCGACCGGCAGCTGGCGCTGCGCGAT 
GGCAATTGGCAGGTGGCGCCGCTGGCGTCCTGA