ViewGene
Locus Name:
GeneID:
Location:

GeneID:1547
TrivialName: PA14_26700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26700
PAO1 Ortholog Locus:PA2889
Sequence Length:1161
Protein Length:386
Start: 2327035
Stop: 2325875
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06277.1|AE004715_3 (AE004715) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 386/386 (100%), Positives = 386/386 (100%)
Sequence:
ATGATCTTCACCCAGGAACACGAGGAACTCCGCCGCACCGTTCGCAGCTTCGTCGAGCGGGAAATCAACCCC
AACGTCGACCAGTGGGAAAAGGACGGCCGCTTCCCGATCCACGAGATCTTCCGCAAGGCCGGCGAACTCGGC
CTGCTGGGCATCTCCAAGCCGGAGAAGTTCGGCGGCATGGGCCTGGACTACAGCTACTCGATCGTCGCCGCC
GAGGAATTCGGCAGCATCACCTGCGGCGGCATCCCGATGGCCATCGGCGTGCAGACCGACATGTGCACCCCG
GCCCTGGCCCGCTTCGGTTCCGACGAGTTGCGCGAGGAGTTCCTCCGCCCGGCCATCGCCGGCGAGATGGTC
GGCTGCATCGGCGTCTCCGAGGTCGGCGCCGGCTCCGACGTCGCCGGCCTGAAGACCACCGCGCGCAAGGAC
GGCGACGACTATGTGATCAACGGCAGCAAGATGTGGATCACCAACTCGCCGTCGGCCGACTTCATGTGCCTG
CTCGCCAATACCTCCGACGACAAGCCGCACGTCAACAAGTCGTTGATCGTGGTCCCGATGAAGACCCCGGGC
ATTACCCTCAGTCCGCACCTGGACAAGCTCGGCATGCGCAGTTCGGAGACCGCCCAGGTGTTCTTCGATAAC
GTCCGCGTACCGCAGCGCAACCGCATCGGCGCGGAAGGTGCCGGCTTCATGATGCAGATGCTGCAGTTCCAG
GAAGAACGGCTGTTCGGCGCGGCCAACATGATCAAGGGCCTGGAGCACTGCATCGACGTCACCATCGAGTAT
TGCAAGGAGCGCAGGACCTTCGGCCAGCCGCTGATCGACAACCAGGTCATCCACTTCCGCATGGCCGAGATG
ATGACCGAGGTCGAGGCGCTGCGCGCCCTGGTCTACCAGGCCACGGAGCTGTACGTGAAAGGCAGGGACGTG
ACGCGCCTGGCTTCCATGGCCAAGCTCAAGGCCGGCCGCCTCGGCCGCGAGGTCAGCGACGCCTGCCTGCAG
TACTGGGGCGGCATGGGCTTCATGTGGGACAACCCGGTCTCCCGCGCCTACCGCGACACCCGCCTGGTATCC
ATCGGCGGCGGTGCCGACGAGATCATGCTCGGCATCATCTGCAAGCTGATGGGCATCCTGCCGGGCAAGAAG
AAAGGCTGA
Translation:
MIFTQEHEELRRTVRSFVEREINPNVDQWEKDGRFPIHEIFRKAGELGLLGISKPEKFGGMGLDYSYSIVAA
EEFGSITCGGIPMAIGVQTDMCTPALARFGSDELREEFLRPAIAGEMVGCIGVSEVGAGSDVAGLKTTARKD
GDDYVINGSKMWITNSPSADFMCLLANTSDDKPHVNKSLIVVPMKTPGITLSPHLDKLGMRSSETAQVFFDN
VRVPQRNRIGAEGAGFMMQMLQFQEERLFGAANMIKGLEHCIDVTIEYCKERRTFGQPLIDNQVIHFRMAEM
MTEVEALRALVYQATELYVKGRDVTRLASMAKLKAGRLGREVSDACLQYWGGMGFMWDNPVSRAYRDTRLVS
IGGGADEIMLGIICKLMGILPGKKKG*
AnnotationID:1556GeneID:1547
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 11:11:50
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01158,cd00567,cd01156,cd01160
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC46247.1| (AP005938) acyl-CoA dehydrogenase [Bradyrhizobium japonicum USDA
           110]
          Length = 345

 Score =  498 bits (1283), Expect = e-140
 Identities = 239/340 (70%), Positives = 283/340 (83%)

>emb|CAE35079.1| (BX640451) probable acyl-CoA dehydrogenase [Bordetella
           bronchiseptica]
          Length = 386

 Score =  444 bits (1142), Expect = e-124
 Identities = 215/385 (55%), Positives = 283/385 (73%), Gaps = 1/385 (0%)

>emb|CAE44966.1| (BX640412) probable acyl-CoA dehydrogenase [Bordetella pertussis]
          Length = 386

 Score =  443 bits (1140), Expect = e-124
 Identities = 214/385 (55%), Positives = 282/385 (73%), Gaps = 1/385 (0%)








 
Structural Features:
cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues,  98.9% aligned
Score =  290 bits (742), Expect = 2e-79

cd01160, LCAD, Long chain acyl-CoA dehydrogenase (LCAD) is acyl-CoA 
dehydrogenases (ACAD)
CD-Length = 372 residues,  99.7% aligned
Score =  266 bits (680), Expect = 3e-72

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues, 100.0% aligned
Score =  249 bits (636), Expect = 4e-67

cd01156, IVD, Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA 
dehydrogenase
CD-Length = 376 residues,  97.3% aligned
Score =  240 bits (612), Expect = 2e-64






   
Genomic Context:






   
Comment:


















    ReferenceID:3097




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20243




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36160




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1547_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1547
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2747
                           PA2889_tr
                           translation of PA2889
                           386
                           99.99
                           99.99
                           0
                           2011.0
     

     
     
86297
                           gb|AAG06277.1|AE004715_3
                           (AE004715) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           386
                           99.99
                           99.99
                           0
                           2011.0
     

     
     
86299
                           gb|AAR05216.1|
                           (AY372453) predicted acyl-CoA dehydrogenases [uncultured marine proteobacterium ANT32C12]
                           386
                           66.83
                           80.05
                           3
                           1369.0
     

     
     
86298
                           emb|CAE27579.1|
                           (BX572599) putative acyl-CoA dehydrogenase [Rhodopseudomonas palustris CGA009]
                           386
                           66.58
                           82.12
                           2
                           1397.0
     

     
     
86300
                           gb|AAR05190.1|
                           (AY372452) predicted acyl-CoA dehydrogenases [uncultured marine proteobacterium ANT8C10]
                           386
                           66.58
                           80.05
                           3
                           1368.0
     

     






      

          
GC ORFID: 44549How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2889Glimmer Score: 

          
Start: 2626891Stop: 2628051

          
Length: 1161


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2889 translation of PA2889Homolog Bit Score 779.0

          
Other Homologs:  t_PA2889 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCTTCACCCAGGAACACGAGGAACTCCGCCGCACCGTTCGCAGCTTCGTCGAGCGGGAAATCAACCCC 
AACGTCGACCAGTGGGAAAAGGACGGCCGCTTCCCGATCCACGAGATCTTCCGCAAGGCCGGCGAACTCGGC 
CTGCTGGGCATCTCCAAGCCGGAGAAGTTCGGCGGCATGGGCCTGGACTACAGCTACTCGATCGTCGCCGCC 
GAGGAATTCGGCAGCATCACCTGCGGCGGCATCCCGATGGCCATCGGCGTGCAGACCGACATGTGCACCCCG 
GCCCTGGCCCGCTTCGGTTCCGACGAGTTGCGCGAGGAGTTCCTCCGCCCGGCCATCGCCGGCGAGATGGTC 
GGCTGCATCGGCGTCTCCGAGGTCGGCGCCGGCTCCGACGTCGCCGGCCTGAAGACCACCGCGCGCAAGGAC 
GGCGACGACTATGTGATCAACGGCAGCAAGATGTGGATCACCAACTCGCCGTCGGCCGACTTCATGTGCCTG 
CTCGCCAATACCTCCGACGACAAGCCGCACGTCAACAAGTCGTTGATCGTGGTCCCGATGAAGACCCCGGGC 
ATTACCCTCAGTCCGCACCTGGACAAGCTCGGCATGCGCAGTTCGGAGACCGCCCAGGTGTTCTTCGATAAC 
GTCCGCGTACCGCAGCGCAACCGCATCGGCGCGGAAGGTGCCGGCTTCATGATGCAGATGCTGCAGTTCCAG 
GAAGAACGGCTGTTCGGCGCGGCCAACATGATCAAGGGCCTGGAGCACTGCATCGACGTCACCATCGAGTAT 
TGCAAGGAGCGCAGGACCTTCGGCCAGCCGCTGATCGACAACCAGGTCATCCACTTCCGCATGGCCGAGATG 
ATGACCGAGGTCGAGGCGCTGCGCGCCCTGGTCTACCAGGCCACGGAGCTGTACGTGAAAGGCAGGGACGTG 
ACGCGCCTGGCTTCCATGGCCAAGCTCAAGGCCGGCCGCCTCGGCCGCGAGGTCAGCGACGCCTGCCTGCAG 
TACTGGGGCGGCATGGGCTTCATGTGGGACAACCCGGTCTCCCGCGCCTACCGCGACACCCGCCTGGTATCC 
ATCGGCGGCGGTGCCGACGAGATCATGCTCGGCATCATCTGCAAGCTGATGGGCATCCTGCCGGGCAAGAAG 
AAAGGCTGA