ViewGene
Locus Name:
GeneID:
Location:

GeneID:1546
TrivialName: PA14_06920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06920
PAO1 Ortholog Locus:PA0530
Sequence Length:1182
Protein Length:393
Start: 598897
Stop: 600078
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03919.1|AE004489_11 (AE004489) probable class III pyridoxal phosphate-dependent aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 393/393 (100%), Positives = 393/393 (100%)
Sequence:
ATGGCTGATGCGCTGGATAGCCTGCGCCTGATGCGCACCCAGGAACGGCCCGCGCAGGTGTTCGTCCGTGGC
CAGGGCTCGTGGCTGTGGGACAGCGACGGACGCGCCTTCCTCGACTTCACCCAGGGCCTGGCGGTGAACTGC
CTCGGCCACAGTCCCAGCGTGCTGGTCCAGGCCCTGGCCCGGCAGGCGCGGGAGCTGGTCAGCGCCGGCCCC
GGCCTGCTCAACCGGCCGGTGCTGGCATTGGCGCAGCGCCTGTGCCTGGCGACCGGCAGCGACCAGGCCTAC
TTCCTCACCAGCGGCGCCGAGGCCAACGAAGCGGCCATCGCCCTGGCGCGCAAGTGGGGCCGCCTGCATCGC
GGCGGCGCGCAACGGATCGTCAGCACCGTCAACAGCATCCATGGACGCACCCCGGGCACCCTGACGGCTTGT
GGCAAGCCGGCGCAGCATGGCCTGGAGGGATTCGCCAGGGTGCCGTTCAACGACCTCGACGCCATGGCCGCG
GCCATCGACGAAGAGACGGTGGCGGTGATGCTGGAGCCGGTGCAGGGCGATGCCGGGGTGATCCCGGCGACC
CTCGACTACCTGCGTGGCATCGAGCGGCTGTGCCGGCAGCGTGGCGTCCTGTTGATCCTCGACGAGGTGCAG
ACCGGCATCGGCCGCTGCGGCGCGCTGCTGGCGGAGGAACTGTACGGGGTACGCGCCGACATCGTTACCCTC
GGCAAGGGCCTCGGCGCCGGGGTGCCGCTGTCGGCGCTGCTGGCGCGTGGCAACGCCTGTTGCTTCGAACCG
GGCGACCAGCTTGGCACCCACCATGGCAACGCGTTGATGACCGCTGCCGGGCTGGCGGTACTGAATACCGTG
CTGGAGCCGGGTTTCCTGGAGCAGGTGCGCGAGCAGGGCACTCACCTGCGCGATGGCCTGGCCCGTGTCGCG
CGTCGCTATGGGCATGGTCCGCTGCGCGGCCAGGGACTGTTCTGGGGGCTGCCGCTGATCGGCCAGCGCGCG
CCGGCGGTGGTTCGCGCGGCGTTCGGCGAAGGCCTGCTGATCAACGCGCCGCAGCCGCATTGCCTGCGTTTT
TCCCCGGCGCTGACGGTGAGCCGGGCCAACGTCGACGAAATGCTGCGGCGACTGGAGCGGGCCCTGGCCCGG
GTCGCCAACCGACACGAGGAGGTGGCCTGA
Translation:
MADALDSLRLMRTQERPAQVFVRGQGSWLWDSDGRAFLDFTQGLAVNCLGHSPSVLVQALARQARELVSAGP
GLLNRPVLALAQRLCLATGSDQAYFLTSGAEANEAAIALARKWGRLHRGGAQRIVSTVNSIHGRTPGTLTAC
GKPAQHGLEGFARVPFNDLDAMAAAIDEETVAVMLEPVQGDAGVIPATLDYLRGIERLCRQRGVLLILDEVQ
TGIGRCGALLAEELYGVRADIVTLGKGLGAGVPLSALLARGNACCFEPGDQLGTHHGNALMTAAGLAVLNTV
LEPGFLEQVREQGTHLRDGLARVARRYGHGPLRGQGLFWGLPLIGQRAPAVVRAAFGEGLLINAPQPHCLRF
SPALTVSRANVDEMLRRLERALARVANRHEEVA*
AnnotationID:1555GeneID:1546
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:23
Gene Name:
Confidence Code:3
GeneProduct:class III pyridoxal phosphate-dependent aminotransferase
Cell Localization:()
Synonyms:argD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative acetylornithine aminotransferase
Functional Category Confidence Code:5
COGs:COG4992,pfam00202
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66003.1|AE016229_4 (AE016775) acetylornithine aminotransferase, putative [Pseudomonas
           putida KT2440]
          Length = 426

 Score =  494 bits (1273), Expect = e-139
 Identities = 251/382 (65%), Positives = 298/382 (78%), Gaps = 6/382 (1%)

>dbj|BAC49847.1| (AP005951) acetylornithine aminotransferase [Bradyrhizobium
           japonicum USDA 110]
          Length = 398

 Score =  354 bits (909), Expect = 5e-97
 Identities = 193/380 (50%), Positives = 245/380 (64%), Gaps = 5/380 (1%)






 
Structural Features:
COG4992, ArgD, Ornithine/acetylornithine aminotransferase 
[Amino acid transport and metabolism]
CD-Length = 404 residues,  96.0% aligned
Score =  427 bits (1100), Expect = 8e-121
Identities = 181/390 (46%), Positives = 235/390 (60%), Gaps = 11/390 (2%)

pfam00202, Aminotran_3, Aminotransferase class-III.
CD-Length = 402 residues,  98.0% aligned
Score =  285 bits (730), Expect = 8e-78
Identities = 149/394 (37%), Positives = 215/394 (54%), Gaps = 28/394 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3095




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20241




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33835




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1546_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1546
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2746
                           PA0530_tr
                           translation of PA0530
                           393
                           99.99
                           99.99
                           0
                           2015.0
     

     
     
86269
                           gb|AAG03919.1|AE004489_11
                           (AE004489) probable class III pyridoxal phosphate-dependent aminotransferase [Pseudomonas aeruginosa PAO1]
                           393
                           99.99
                           99.99
                           0
                           2015.0
     

     
     
86270
                           gb|AAN66003.1|AE016229_4
                           (AE016775) acetylornithine aminotransferase, putative [Pseudomonas putida KT2440]
                           427
                           59.71
                           70.72
                           35
                           1269.0
     

     
     
86271
                           dbj|BAC49847.1|
                           (AP005951) acetylornithine aminotransferase [Bradyrhizobium japonicum USDA 110]
                           404
                           48.76
                           62.12
                           17
                           906.0
     

     
     
86272
                           emb|CAE35315.1|
                           (BX640452) succinylornithine transaminase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           407
                           46.43
                           62.40
                           25
                           894.0
     

     






      

          
GC ORFID: 44548How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0530Glimmer Score: 

          
Start: 6400239Stop: 6401420

          
Length: 1182


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0530 translation of PA0530Homolog Bit Score 780.0

          
Other Homologs:  t_PA0530 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGATGCGCTGGATAGCCTGCGCCTGATGCGCACCCAGGAACGGCCCGCGCAGGTGTTCGTCCGTGGC 
CAGGGCTCGTGGCTGTGGGACAGCGACGGACGCGCCTTCCTCGACTTCACCCAGGGCCTGGCGGTGAACTGC 
CTCGGCCACAGTCCCAGCGTGCTGGTCCAGGCCCTGGCCCGGCAGGCGCGGGAGCTGGTCAGCGCCGGCCCC 
GGCCTGCTCAACCGGCCGGTGCTGGCATTGGCGCAGCGCCTGTGCCTGGCGACCGGCAGCGACCAGGCCTAC 
TTCCTCACCAGCGGCGCCGAGGCCAACGAAGCGGCCATCGCCCTGGCGCGCAAGTGGGGCCGCCTGCATCGC 
GGCGGCGCGCAACGGATCGTCAGCACCGTCAACAGCATCCATGGACGCACCCCGGGCACCCTGACGGCTTGT 
GGCAAGCCGGCGCAGCATGGCCTGGAGGGATTCGCCAGGGTGCCGTTCAACGACCTCGACGCCATGGCCGCG 
GCCATCGACGAAGAGACGGTGGCGGTGATGCTGGAGCCGGTGCAGGGCGATGCCGGGGTGATCCCGGCGACC 
CTCGACTACCTGCGTGGCATCGAGCGGCTGTGCCGGCAGCGTGGCGTCCTGTTGATCCTCGACGAGGTGCAG 
ACCGGCATCGGCCGCTGCGGCGCGCTGCTGGCGGAGGAACTGTACGGGGTACGCGCCGACATCGTTACCCTC 
GGCAAGGGCCTCGGCGCCGGGGTGCCGCTGTCGGCGCTGCTGGCGCGTGGCAACGCCTGTTGCTTCGAACCG 
GGCGACCAGCTTGGCACCCACCATGGCAACGCGTTGATGACCGCTGCCGGGCTGGCGGTACTGAATACCGTG 
CTGGAGCCGGGTTTCCTGGAGCAGGTGCGCGAGCAGGGCACTCACCTGCGCGATGGCCTGGCCCGTGTCGCG 
CGTCGCTATGGGCATGGTCCGCTGCGCGGCCAGGGACTGTTCTGGGGGCTGCCGCTGATCGGCCAGCGCGCG 
CCGGCGGTGGTTCGCGCGGCGTTCGGCGAAGGCCTGCTGATCAACGCGCCGCAGCCGCATTGCCTGCGTTTT 
TCCCCGGCGCTGACGGTGAGCCGGGCCAACGTCGACGAAATGCTGCGGCGACTGGAGCGGGCCCTGGCCCGG 
GTCGCCAACCGACACGAGGAGGTGGCCTGA