ViewGene

Locus Name:
GeneID:
Location:

GeneID:1545
TrivialName: PA14_05230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05230
PAO1 Ortholog Locus:PA0400
Sequence Length:1185
Protein Length:394
Start: 456745
Stop: 457929
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03789.1|AE004477_6 (AE004477) probable cystathionine gamma-lyase [Pseudomonas aeruginosa PAO1]
Identities = 393/394 (99%), Positives = 393/394 (99%)
Sequence:
ATGAGCCAGCACGACCAGCATCCCGACGCCCCGGCCCAGGCCTTCGCGACCCGGGTCATCCACGCCGGGCAG
GCCCCCGATCCCTCGACCGGCGCGATCATGCCGCCGATCTATGCCAACTCCACCTACATCCAGGAAAGCCCC
GGGGTACACAAGGGGCTCGACTACGGCCGCTCGCACAACCCGACCCGCTGGGCCCTGGAGCGCTGCGTGGCC
GACCTCGAGGGCGGCGCCCAGGCCTTCGCCTTCGCCTCCGGCCTGGCGGCGATCTCCTCGGTGCTGGAGCTG
CTCGACGCCGGTTCCCACATCGTTTCCGGAAATGACCTCTACGGCGGTACCTTCCGCCTGTTCGAGCGGGTC
CGCCGGCGCAGCGCCGGGCATCGCTTCAGCTTCGTCGACCCGACCGACCTGCAGGCCTTCGAGGCCGCGCTG
ACCCCGGAAACCCGCATGGTCTGGGTGGAAACCCCGAGCAACCCGCTGCTGCGCCTCACCGACCTGCGCGCC
ATCGCCCAGCTCTGCCGCGCCCGCGGCATCATCAGCGTGGCCGACAACACCTTCGCCAGCCCCTACATCCAG
CGCCCCCTGGAACTGGGCTTCGACGTGGTGGTGCACTCCACCACCAAGTACCTGAACGGCCATTCCGACGTG
ATCGGCGGCATCGCCATCGTCGGCGACAACCCGGACCTGCGCGAGCGCCTGGGCTTCCTGCAGAACTCGGTG
GGCGCCATCTCCGGGCCGTTCGACGCCTTCCTCACCCTGCGCGGGGTGAAGACCCTGGCGCTGCGCATGGAG
CGCCATTGCAGCAACGCCCTGGCCCTGGCCCAGTGGCTGGAGCGCCAGCCGCAGGTGGCGCGGGTCTACTAC
CCCGGCCTGGCTTCGCACCCGCAGCATGAGCTGGCGAAACGGCAGATGCGTGGCTTCGGCGGGATGATCTCC
CTCGACCTGCGCTGCGACCTGGCCGGCGCCCGGCGCTTCCTGGAGAACGTGCGGATCTTCTCCCTGGCGGAG
AGCCTGGGCGGGGTGGAAAGCCTGATCGAGCATCCGGCGATCATGACCCACGCCAGCATCCCGGCGGAAACC
CGCGCCGACCTGGGCATCGGTGACTCGCTGATCCGCCTGTCGGTGGGCGTCGAGGCGCTGGAGGACCTGCAG
GCCGACCTGGCGCAGGCGCTGGCGAAGATCTGA
Translation:
MSQHDQHPDAPAQAFATRVIHAGQAPDPSTGAIMPPIYANSTYIQESPGVHKGLDYGRSHNPTRWALERCVA
DLEGGAQAFAFASGLAAISSVLELLDAGSHIVSGNDLYGGTFRLFERVRRRSAGHRFSFVDPTDLQAFEAAL
TPETRMVWVETPSNPLLRLTDLRAIAQLCRARGIISVADNTFASPYIQRPLELGFDVVVHSTTKYLNGHSDV
IGGIAIVGDNPDLRERLGFLQNSVGAISGPFDAFLTLRGVKTLALRMERHCSNALALAQWLERQPQVARVYY
PGLASHPQHELAKRQMRGFGGMISLDLRCDLAGARRFLENVRIFSLAESLGGVESLIEHPAIMTHASIPAET
RADLGIGDSLIRLSVGVEALEDLQADLAQALAKI*
AnnotationID:1554GeneID:1545
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 19:07:02
Gene Name:
Confidence Code:3
GeneProduct:probable cystathionine gamma-lyase
Cell Localization:(1) Cytoplasmic
Synonyms:metB metC
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01053, COG0626
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:3093
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17045
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI - Conserved Domain Search (BLASTP).
Reference Type:Blast (text/plain)
Data:PA0400_CDS.cgi
URL:
ReferenceID:20239
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1545

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2744 PA0400_tr translation of PA0400 394 99.74 99.74 0 2015.0
86110 gb|AAG03789.1|AE004477_6 (AE004477) probable cystathionine gamma-lyase [Pseudomonas aeruginosa PAO1] 394 99.74 99.74 0 2015.0
86112 dbj|BAB51144.1| (AP003004) cystathionine gamma-lyase [Mesorhizobium loti] 395 66.58 80.75 2 1380.0
86111 gb|AAM38445.1| (AE012010) cystathionine gamma-lyase-like protein [Xanthomonas axonopodis pv. citri str. 306] 398 64.57 78.64 4 1372.0
86113 gb|AAK53484.1|AF204145_25 (AF204145) cystathionine gamma-synthase [Xanthomonas campestris pv. campestris] 399 63.65 77.69 5 1351.0
GC ORFID: 44547How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0400Glimmer Score:
Start: 6258087Stop: 6259271
Length: 1185
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0400 translation of PA0400Homolog Bit Score 780.0
Other Homologs: t_PA3107 (ORF: BLASTX 302.0), psyr_15may02_Scaffold5_revised_gene5954 (ORF: BLASTX 175.0), t_PA0400 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCAGCACGACCAGCATCCCGACGCCCCGGCCCAGGCCTTCGCGACCCGGGTCATCCACGCCGGGCAG
GCCCCCGATCCCTCGACCGGCGCGATCATGCCGCCGATCTATGCCAACTCCACCTACATCCAGGAAAGCCCC
GGGGTACACAAGGGGCTCGACTACGGCCGCTCGCACAACCCGACCCGCTGGGCCCTGGAGCGCTGCGTGGCC
GACCTCGAGGGCGGCGCCCAGGCCTTCGCCTTCGCCTCCGGCCTGGCGGCGATCTCCTCGGTGCTGGAGCTG
CTCGACGCCGGTTCCCACATCGTTTCCGGAAATGACCTCTACGGCGGTACCTTCCGCCTGTTCGAGCGGGTC
CGCCGGCGCAGCGCCGGGCATCGCTTCAGCTTCGTCGACCCGACCGACCTGCAGGCCTTCGAGGCCGCGCTG
ACCCCGGAAACCCGCATGGTCTGGGTGGAAACCCCGAGCAACCCGCTGCTGCGCCTCACCGACCTGCGCGCC
ATCGCCCAGCTCTGCCGCGCCCGCGGCATCATCAGCGTGGCCGACAACACCTTCGCCAGCCCCTACATCCAG
CGCCCCCTGGAACTGGGCTTCGACGTGGTGGTGCACTCCACCACCAAGTACCTGAACGGCCATTCCGACGTG
ATCGGCGGCATCGCCATCGTCGGCGACAACCCGGACCTGCGCGAGCGCCTGGGCTTCCTGCAGAACTCGGTG
GGCGCCATCTCCGGGCCGTTCGACGCCTTCCTCACCCTGCGCGGGGTGAAGACCCTGGCGCTGCGCATGGAG
CGCCATTGCAGCAACGCCCTGGCCCTGGCCCAGTGGCTGGAGCGCCAGCCGCAGGTGGCGCGGGTCTACTAC
CCCGGCCTGGCTTCGCACCCGCAGCATGAGCTGGCGAAACGGCAGATGCGTGGCTTCGGCGGGATGATCTCC
CTCGACCTGCGCTGCGACCTGGCCGGCGCCCGGCGCTTCCTGGAGAACGTGCGGATCTTCTCCCTGGCGGAG
AGCCTGGGCGGGGTGGAAAGCCTGATCGAGCATCCGGCGATCATGACCCACGCCAGCATCCCGGCGGAAACC
CGCGCCGACCTGGGCATCGGTGACTCGCTGATCCGCCTGTCGGTGGGCGTCGAGGCGCTGGAGGACCTGCAG
GCCGACCTGGCGCAGGCGCTGGCGAAGATCTGA