ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1544

TrivialName: PA14_03550

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_03550

PAO1 Ortholog Locus: PA0273

Sequence Length: 1215

Protein Length: 404

Start: 323247

Stop: 322033

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03662.1|AE004465_8 (AE004465) probable MFS transporter [Pseudomonas aeruginosa PAO1] Identities = 396/404 (98%), Positives = 400/404 (99%)

Sequence:

ATGCCCACTGCCAACCCACCCGGCCGCACCCTCTGGCTGATGGCCGCCATCGTCCTGGTCGGCCTCAACCTG
CGGCCCTCCATGGCCGCCGTCGGCCCACTGCTGAACGCCATGCGCGGCGAGATCGCGCTCAGCTTCGGCGAC
GTCTCGCTGCTGACCGCCCTGCCGGTGCTGACCCTCGGCCTCGGCATGTTCTTCGGTCTGAGCATCGCCCGC
CGCGTCGGCGAGTGGCGTTCGGTGGCCCTCGCCCTGCTGCTGATCGGCGCCGCCAGCGCCCTGCGCCTGGGC
AGCCGAGGCCTGCCCGACCTGCTCGGCAGCGCCATGCTCGCCGGCCTCGGCATCGCCCTGATCCAGGCGCTG
ATGCCGGCCCTGATCAAGGCCCGTTTCGGCGCGCGCACGCCGCTCTGCATGGGGCTCTACGTCACCGCCATC
ATGGCTGGCGCGGCGCTGTCCGCCAGCGCTGCGCCGACCCTGGCGGAGCACGCCGGCTGGCGGCTCGGCCTC
GGTGCCTGGGCGGCGCTCGCCGCGCTCGCGCTGCTGGCCTGGTGGCTGCAACCCGGCACCCGCCTGCGCCTG
CCCGACGCGCAGCCGGGCAGGAGCCTCCTGCGCTATCCGCGGACCTGGCTGCTGATCCTGTTCTTCGGCCTC
GGCACGGCCTGCTACACCTGCGTGCTGGCCTGGCTCGCGCCCTATTACCTGGAACAGGGCTGGAGCGCCCAG
GAATCCGGGCTGCTGCTCGGTTTCCTGACGGCCGTGGAGGTACTCTCCGGGTTGCTCGCGCCGGCCCTGGCC
AGCCGCTCGCGGGATCGCCGCCCGGTGCTGGTCGGGCTAACCGCGCTGATGCTGGCCGGCTTCCTCGGCCTC
GCCTGGGCGCCGGCCAGCCTGCCGCTGCTCTGGGCGCTGTGCCTCGGACTGGGCATCGGCGGGCTGTTCCCC
ATGGGCTTGATCGTCTGTCTCGACCACTTCGACGCGCCGCAACGCGCCGGTCAACTGGCTGCCCTGGTACAA
GGCGCCGGCTACCTGATCGCCGGGGTCTCGCCATGGATCGCCGGGCTGCTGCGCGACAGCCTCGGCAGCTTC
ACCGGCGCCTGGCTCGGGCTGACCACGGTGGCGGCGCTGCTACTGGGGCTGGGCCTGCGCTTCGACCCGCGG
CGCTATGCGGCACTGTTCGCCGAGCGACAGCCGCAAGGCGTCGGCGCCGAAAGCTTGCGCTGA

Translation:

MPTANPPGRTLWLMAAIVLVGLNLRPSMAAVGPLLNAMRGEIALSFGDVSLLTALPVLTLGLGMFFGLSIAR
RVGEWRSVALALLLIGAASALRLGSRGLPDLLGSAMLAGLGIALIQALMPALIKARFGARTPLCMGLYVTAI
MAGAALSASAAPTLAEHAGWRLGLGAWAALAALALLAWWLQPGTRLRLPDAQPGRSLLRYPRTWLLILFFGL
GTACYTCVLAWLAPYYLEQGWSAQESGLLLGFLTAVEVLSGLLAPALASRSRDRRPVLVGLTALMLAGFLGL
AWAPASLPLLWALCLGLGIGGLFPMGLIVCLDHFDAPQRAGQLAALVQGAGYLIAGVSPWIAGLLRDSLGSF
TGAWLGLTTVAALLLGLGLRFDPRRYAALFAERQPQGVGAESLR*

AnnotationID:1553 GeneID:1544

AnnotatorUID: diggins

Modification Date/Time: 2005-03-24 05:05:26

Gene Name:

Confidence Code: 3

GeneProduct: putative MFS transporter

Cell Localization: ()

Synonyms: cynX

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name: putative cyanate permease

Functional Category Confidence Code: 5

COGs: COG2807

Secondary Functional Category(ies): membrane proteins

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG2807, CynX, Cyanate permease 
[Inorganic ion transport and metabolism]
CD-Length = 395 residues, 100.0% aligned
Score =  314 bits (807), Expect = 1e-86
Identities = 172/396 (43%), Positives = 228/396 (57%), Gaps = 5/396 (1%)

Genomic Context:

Comment:

ReferenceID:3091

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20237

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33629

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1544_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1544

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2742 PA0273_tr translation of PA0273 404 98.01 99.00 0 2014.0

86100 gb|AAG03662.1|AE004465_8 (AE004465) probable MFS transporter [Pseudomonas aeruginosa PAO1] 404 98.01 99.00 0 2014.0

86106 emb|CAE31661.1| (BX640440) putative membrane transport protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 418 40.66 52.87 22 713.0

86108 emb|CAE43151.1| (BX640419) putative membrane transport protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 421 40.38 52.73 32 693.0

2743 PA2500_tr translation of PA2500 420 40.23 52.85 28 730.0

GC ORFID: `44546`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0273`	Glimmer Score:
Start: `6124588`	Stop: `6123374`
Length: `1215`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0273 translation of PA0273`	Homolog Bit Score `780.0`
Other Homologs: `psyr_15may02_Scaffold9_revised_gene8021 (ORF: BLASTX 414.0), t_PA2500 (ORF: BLASTX 284.0), t_PA0273 (ORF: GLIMMER)`
GC ORF Sequence
ATGCCCACTGCCAACCCACCCGGCCGCACCCTCTGGCTGATGGCCGCCATCGTCCTGGTCGGCCTCAACCTG CGGCCCTCCATGGCCGCCGTCGGCCCACTGCTGAACGCCATGCGCGGCGAGATCGCGCTCAGCTTCGGCGAC GTCTCGCTGCTGACCGCCCTGCCGGTGCTGACCCTCGGCCTCGGCATGTTCTTCGGTCTGAGCATCGCCCGC CGCGTCGGCGAGTGGCGTTCGGTGGCCCTCGCCCTGCTGCTGATCGGCGCCGCCAGCGCCCTGCGCCTGGGC AGCCGAGGCCTGCCCGACCTGCTCGGCAGCGCCATGCTCGCCGGCCTCGGCATCGCCCTGATCCAGGCGCTG ATGCCGGCCCTGATCAAGGCCCGTTTCGGCGCGCGCACGCCGCTCTGCATGGGGCTCTACGTCACCGCCATC ATGGCTGGCGCGGCGCTGTCCGCCAGCGCTGCGCCGACCCTGGCGGAGCACGCCGGCTGGCGGCTCGGCCTC GGTGCCTGGGCGGCGCTCGCCGCGCTCGCGCTGCTGGCCTGGTGGCTGCAACCCGGCACCCGCCTGCGCCTG CCCGACGCGCAGCCGGGCAGGAGCCTCCTGCGCTATCCGCGGACCTGGCTGCTGATCCTGTTCTTCGGCCTC GGCACGGCCTGCTACACCTGCGTGCTGGCCTGGCTCGCGCCCTATTACCTGGAACAGGGCTGGAGCGCCCAG GAATCCGGGCTGCTGCTCGGTTTCCTGACGGCCGTGGAGGTACTCTCCGGGTTGCTCGCGCCGGCCCTGGCC AGCCGCTCGCGGGATCGCCGCCCGGTGCTGGTCGGGCTAACCGCGCTGATGCTGGCCGGCTTCCTCGGCCTC GCCTGGGCGCCGGCCAGCCTGCCGCTGCTCTGGGCGCTGTGCCTCGGACTGGGCATCGGCGGGCTGTTCCCC ATGGGCTTGATCGTCTGTCTCGACCACTTCGACGCGCCGCAACGCGCCGGTCAACTGGCTGCCCTGGTACAA GGCGCCGGCTACCTGATCGCCGGGGTCTCGCCATGGATCGCCGGGCTGCTGCGCGACAGCCTCGGCAGCTTC ACCGGCGCCTGGCTCGGGCTGACCACGGTGGCGGCGCTGCTACTGGGGCTGGGCCTGCGCTTCGACCCGCGG CGCTATGCGGCACTGTTCGCCGAGCGACAGCCGCAAGGCGTCGGCGCCGAAAGCTTGCGCTGA