Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAG03617.1| AE004460_10 (AE004460) beta-ketoadipyl CoA thiolase PcaF [Pseudomonas aeruginosa PAO1]
Identities = 399/401 (99%), Positives = 400/401 (99%)
Sequence:
ATGAGCCGCGAGGTATTCATCTGCGATGCCGTGCGCACGCCGATCGGCCGTTTCGGCGGCAGTCTTTCCGCG
GTGCGCGCCGACGACCTCGCGGCGGTGCCGCTGAAGGCCCTGGTCGAGCGCAACCCGGGGGTCGACTGGTCG
GCGCTGGACGAGGTGTTCCTCGGCTGCGCCAACCAGGCCGGCGAGGACAACCGTAACGTGGCGCGCATGGCG
CTGCTGCTGGCCGGTTTGCCGGAGAGCGTGCCCGGCGTCACCCTCAACCGCCTCTGCGCCTCGGGGATGGAC
GCCATCGGCACGGCGTTCCGCGCCATCGCCTGCGGCGAGATGGAGCTGGCCATCGCCGGCGGCGTCGAGTCG
ATGTCGCGCGCGCCGTACGTGATGGGCAAGGCCGATAGCGCCTTCGGGCGCGGCCAGAAGATCGAGGACACC
ACCATCGGCTGGCGCTTCGTCAACCCGCTGATGAAGGAGCAGTACGGCATCGACCCGATGCCGCAGACCGCC
GACAACGTCGCCGACGACTATCGCGTGTCGCGTGCCGACCAGGATGCCTTCGCCCTGCGCAGCCAGCAGCGC
GCCGGCAGGGCGCAGGCGGCCGGTTTCTTCGCCGAGGAAATCGTCCCGGTGACGATTCGCGGGCGCAAGGGC
GACACCCTGGTCGAGTACGACGAGCATCCGCGTCCCGACACCACCCTGGAGGCGCTGGCCCGGCTCAAGCCG
GTCAACGGGCCGGAGAAGACCGTCACCGCCGGCAACGCGTCCGGGGTCAACGACGGCGCCGCCGCGCTGGTC
CTGGCCTCCGCCGAGGCAGTGGAGAAGCACGGCCTGACTCCGCGCGCGCGGGTGCTGGGCATGGCCAGCGCC
GGCGTCGCCCCACGGATCATGGGCATCGGCCCGGTGCCGGCGGTGCGCAAGCTGCTGCGGCGCCTGGACCTG
GCGATCGACGCCTTCGACGTGATCGAACTCAACGAAGCCTTCGCCAGCCAGGGCCTGGCCTGCCTGCGCGAA
CTGGGCGTGGCCGACGACAGTGAGAAGGTCAACCCGAACGGCGGTGCCATCGCCCTCGGCCACCCGCTGGGG
ATGAGCGGTGCGCGGCTGGTCCTCACCGCGCTCCATCAACTTGAGAAGAGCGGCGGCCGGCGCGGCCTGGCG
ACCATGTGCGTAGGCGTCGGCCAAGGCCTGGCGCTGGCCATCGAGCGGGTCTGA
Translation:
MSREVFICDAVRTPIGRFGGSLSAVRADDLAAVPLKALVERNPGVDWSALDEVFLGCANQAGEDNRNVARMA
LLLAGLPESVPGVTLNRLCASGMDAIGTAFRAIACGEMELAIAGGVESMSRAPYVMGKADSAFGRGQKIEDT
TIGWRFVNPLMKEQYGIDPMPQTADNVADDYRVSRADQDAFALRSQQRAGRAQAAGFFAEEIVPVTIRGRKG
DTLVEYDEHPRPDTTLEALARLKPVNGPEKTVTAGNASGVNDGAAALVLASAEAVEKHGLTPRARVLGMASA
GVAPRIMGIGPVPAVRKLLRRLDLAIDAFDVIELNEAFASQGLACLRELGVADDSEKVNPNGGAIALGHPLG
MSGARLVLTALHQLEKSGGRRGLATMCVGVGQGLALAIERV*
AnnotationID:1552 GeneID:1543
Modification Date/Time:
2005-03-23 13:01:28
GeneProduct: beta-ketoadipyl CoA thiolase PcaF
Cell Localization Confidence Code: 5
Functional Category: (5) Carbon compound catabolism
Alternate Gene Product Name: 3-oxoadipyl-CoA thiolase
Functional Category Confidence Code: 5
Secondary Functional Category(ies): fatty acid and phospholipid metabolism
Homology: >gb|AAL02407.1| (AY044272) 3-oxoadipyl-CoA thiolase [Pseudomonas sp. B13]
Length = 401
Score = 692 bits (1787), Expect = 0.0
Identities = 345/401 (86%), Positives = 378/401 (94%)
>gb|AAN67000.1| AE016328_5 (AE016779) beta-ketoadipyl CoA thiolase PcaF [Pseudomonas putida
KT2440]
Length = 400
Score = 677 bits (1748), Expect = 0.0
Identities = 336/398 (84%), Positives = 369/398 (92%)
>gb|AAG12159.1| (AY007371) beta-ketoadipyl CoA thiolase [Burkholderia pseudomallei]
Length = 400
Score = 572 bits (1474), Expect = e-162
Identities = 292/399 (73%), Positives = 334/399 (83%), Gaps = 2/399 (0%)
Structural Features: COG0183 , PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism]
CD-Length = 392 residues, 100.0% aligned
Score = 331 bits (849), Expect = 1e-91
Identities = 176/411 (42%), Positives = 228/411 (55%), Gaps = 30/411 (7%)
pfam00108 , Thiolase_N, Thiolase, N-terminal domain.
CD-Length = 264 residues, 99.6% aligned
Score = 254 bits (651), Expect = 1e-68
Identities = 131/269 (48%), Positives = 176/269 (65%), Gaps = 8/269 (2%)
pfam02803 , Thiolase_C, Thiolase, C-terminal domain.
CD-Length = 123 residues, 100.0% aligned
Score = 150 bits (381), Expect = 3e-37
Identities = 70/125 (56%), Positives = 92/125 (73%), Gaps = 2/125 (1%)
GC ORFID: 44545 How Found: BLASTX
GC_TrimmedSeqID: 69 Blast Result ID
Subject Sequence Name: t_PA0228 Glimmer Score:
Start: 6048600 Stop: 6049805
Length: 1206
Start Codon: ATG Truncated Start:
Stop Codon: TGA Truncated Stop:
Homolog: t_PA0228 translation of PA0228 Homolog Bit Score 780.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6193 (ORF: BLASTX 666.0), t_PA3589 (ORF: BLASTX 403.0), t_PA2001 (ORF: BLASTX 317.0), psyr_15may02_Scaffold15_revised_gene2524 (ORF: BLASTX 316.0), psyr_15may02_Scaffold9_revised_gene8045 (ORF: BLASTX 279.0), t_PA2940 (ORF: BLASTX 273.0), t_PA3454 (ORF: BLASTX 272.0), t_PA3925 (ORF: BLASTX 270.0), t_PA1736 (ORF: BLASTX 263.0), t_PA2553 (ORF: BLASTX 260.0), t_PA0228 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCGCGAGGTATTCATCTGCGATGCCGTGCGCACGCCGATCGGCCGTTTCGGCGGCAGTCTTTCCGCG GTGCGCGCCGACGACCTCGCGGCGGTGCCGCTGAAGGCCCTGGTCGAGCGCAACCCGGGGGTCGACTGGTCG GCGCTGGACGAGGTGTTCCTCGGCTGCGCCAACCAGGCCGGCGAGGACAACCGTAACGTGGCGCGCATGGCG CTGCTGCTGGCCGGTTTGCCGGAGAGCGTGCCCGGCGTCACCCTCAACCGCCTCTGCGCCTCGGGGATGGAC GCCATCGGCACGGCGTTCCGCGCCATCGCCTGCGGCGAGATGGAGCTGGCCATCGCCGGCGGCGTCGAGTCG ATGTCGCGCGCGCCGTACGTGATGGGCAAGGCCGATAGCGCCTTCGGGCGCGGCCAGAAGATCGAGGACACC ACCATCGGCTGGCGCTTCGTCAACCCGCTGATGAAGGAGCAGTACGGCATCGACCCGATGCCGCAGACCGCC GACAACGTCGCCGACGACTATCGCGTGTCGCGTGCCGACCAGGATGCCTTCGCCCTGCGCAGCCAGCAGCGC GCCGGCAGGGCGCAGGCGGCCGGTTTCTTCGCCGAGGAAATCGTCCCGGTGACGATTCGCGGGCGCAAGGGC GACACCCTGGTCGAGTACGACGAGCATCCGCGTCCCGACACCACCCTGGAGGCGCTGGCCCGGCTCAAGCCG GTCAACGGGCCGGAGAAGACCGTCACCGCCGGCAACGCGTCCGGGGTCAACGACGGCGCCGCCGCGCTGGTC CTGGCCTCCGCCGAGGCAGTGGAGAAGCACGGCCTGACTCCGCGCGCGCGGGTGCTGGGCATGGCCAGCGCC GGCGTCGCCCCACGGATCATGGGCATCGGCCCGGTGCCGGCGGTGCGCAAGCTGCTGCGGCGCCTGGACCTG GCGATCGACGCCTTCGACGTGATCGAACTCAACGAAGCCTTCGCCAGCCAGGGCCTGGCCTGCCTGCGCGAA CTGGGCGTGGCCGACGACAGTGAGAAGGTCAACCCGAACGGCGGTGCCATCGCCCTCGGCCACCCGCTGGGG ATGAGCGGTGCGCGGCTGGTCCTCACCGCGCTCCATCAACTTGAGAAGAGCGGCGGCCGGCGCGGCCTGGCG ACCATGTGCGTAGGCGTCGGCCAAGGCCTGGCGCTGGCCATCGAGCGGGTCTGA