ViewGene

Locus Name:
GeneID:
Location:

GeneID:1542
TrivialName: PA14_70240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70240
PAO1 Ortholog Locus:PA5320
Sequence Length:1209
Protein Length:402
Start: 6262382
Stop: 6263590
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08705.1|AE004944_9 (AE004944) Phosphopantothenoylcysteine synthase/(R)-4'-phospho-N-pantothenoylcysteine decarboxylase [Pseudomonas aeruginosa PAO1]
Identities = 401/402 (99%), Positives = 402/402 (100%)
Sequence:
ATGCAGCGGCTCTATCGGAAACGCATCGTCCTCGGCGTGGGCGGCGGCATTGCCGCCTACAAGAGCGCCGAA
CTGGTCCGCCGCCTGCGCGACCAGGGCGCTGAAGTCCGAGTGGTGATGACCCAGGGCGGCCGCGAGTTCATC
ACGCCCCTGACCCTCCAGGCGTTGTCCGGCCATCCGGTGCACACCGATCTGCTGGACCCGGCGGCGGAAGCC
GCGATGGGCCACATCGAACTAGCCCGCTGGGCCGATCTGGTGCTGATCGCACCGGCCACCGCCGACCTCATG
GCGCGCCTGGTCCAGGGCGTGGCCAACGACCTGCTGACCACCCTGGTGCTGGCCACCGACGCGCAAATCGCC
CTGGCACCGGCGATGAACCAGGCCATGTGGCGCGACACCGCGACCCAGGCCAACGCCGAGCTGCTGCGCCAG
CGCGGCTTCCACCTGTTCGGTCCGGCAGCGGGCAGCCAGGCCTGCGGCGACGTCGGCCTCGGGCGCATGCTC
GAAGCCGAGGAACTGGCGCAGCGCGCCGCCGACTGCTTCCAGCGCCAGGCGCTGACCGGCGTGCATGTGCTG
ATCACCGCCGGCCCGACCCAGGAAAACATCGATCCGGTGCGCTACATCACCAACCACAGTTCCGGAAAGATG
GGCTTCGCCCTCGCCGAGGCGGCGGTGGAAGCCGGCGCACGGGTGACCCTGGTCACCGGCCCGGTGCACCTG
CCGACGCCCGACCGGGTGCAGCGCGTCGACGTGGTCAGCGCCCGCGACATGCTGGCCGCCTGCGAGGCGGCA
ATGCCCTGCGACCTGCTGATCGCCTCCGCGGCGGTCGCCGACTACCGCCCGGAAGTGGTCGCCGCGCACAAA
CTGAAGAAAGACCCTACCAGCGGCGAGGGCTTGCTCTTGCAGCTGGTGCGCAATCCCGACATTCTCGCCACC
CTCGCACAGCGCGAGGATCGTCCCTTCAGCGTGGGCTTCGCCGCAGAAACCGAAAACCTGCTGGACTATGCT
GCACGCAAGCTGAAGGACAAGAACCTCGACCTGATCGTCGCCAACGACGTGGCCAACCCCTCGATCGGCTTC
AACAGCGACGAGAACGCGATCACGGTGATCGACCGCGACCTGCATCCGAGCACCTTCGCCCAGACCAGCAAG
GGCAAGATCGCTCGCCAGCTGATCGCCTTCATCGCCGACCGCCTCAACCAGCAATGA
Translation:
MQRLYRKRIVLGVGGGIAAYKSAELVRRLRDQGAEVRVVMTQGGREFITPLTLQALSGHPVHTDLLDPAAEA
AMGHIELARWADLVLIAPATADLMARLVQGVANDLLTTLVLATDAQIALAPAMNQAMWRDTATQANAELLRQ
RGFHLFGPAAGSQACGDVGLGRMLEAEELAQRAADCFQRQALTGVHVLITAGPTQENIDPVRYITNHSSGKM
GFALAEAAVEAGARVTLVTGPVHLPTPDRVQRVDVVSARDMLAACEAAMPCDLLIASAAVADYRPEVVAAHK
LKKDPTSGEGLLLQLVRNPDILATLAQREDRPFSVGFAAETENLLDYAARKLKDKNLDLIVANDVANPSIGF
NSDENAITVIDRDLHPSTFAQTSKGKIARQLIAFIADRLNQQ*
AnnotationID:1551GeneID:1542
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 15:03:06
Gene Name:coaC
Confidence Code:2
GeneProduct:Phosphopantothenoylcysteine synthase/(R)-4'-phospho-N-pantothenoylcysteine decarboxylase
Cell Localization:()
Synonyms:dfp, coaB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:DNA/pantothenate metabolism flavoprotein
Functional Category Confidence Code:5
COGs:COG0452
Secondary Functional Category(ies):
EC Number:4.1.1.36, 6.3.2.5
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53639.1| (AE016856) phosphopantothenoylcysteine
           decarboxylase/phosphopantothenate--cysteine ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 415

 Score =  686 bits (1770), Expect = 0.0
 Identities = 344/401 (85%), Positives = 374/401 (93%)

>gb|AAN70850.1|AE016729_8 (AE016793) phosphopantothenoylcysteine
           decarboxylase/phosphopantothenate--cysteine ligase
           [Pseudomonas putida KT2440]
          Length = 403

 Score =  679 bits (1753), Expect = 0.0
 Identities = 344/401 (85%), Positives = 372/401 (92%)

>gb|AAO09331.1|AE016799_229 (AE016799) DNA/pantothenate metabolism flavoprotein [Vibrio
           vulnificus CMCP6]
          Length = 401

 Score =  428 bits (1101), Expect = e-119
 Identities = 226/371 (60%), Positives = 285/371 (76%), Gaps = 3/371 (0%)
Structural Features:
COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase 
[Coenzyme metabolism]
CD-Length = 392 residues,  99.7% aligned
Score =  418 bits (1077), Expect = 4e-118
Identities = 214/399 (53%), Positives = 272/399 (68%), Gaps = 10/399 (2%)

Genomic Context:
Comment:
ReferenceID:3087
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20233
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34765
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1542_cdd.html
URL:
ReferenceID:35703
Author/Investigator(s): Kupke T.
Title: Molecular characterization of the 4'-phosphopantothenoylcysteine synthetase domain of bacterial dfp flavoproteins.
PubMed: 12140293
MedLine:
Source:
J Biol Chem. 2002 Sep 27;277(39):36137-45. Epub 2002 Jul 24.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12140293
Homologs By Global Alignment
Gene ID:1542

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2733 PA5320_tr translation of PA5320 402 99.75 99.99 0 2013.0
85694 gb|AAG08705.1|AE004944_9 (AE004944) Phosphopantothenoylcysteine synthase/(R)-4'-phospho-N-pantothenoylcysteine decarboxylase [Pseudomonas aeruginosa PAO1] 402 99.75 99.99 0 2013.0
85696 gb|AAN70850.1|AE016729_8 (AE016793) phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase [Pseudomonas putida KT2440] 403 85.35 92.30 1 1751.0
85695 gb|AAO53639.1| (AE016856) phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase [Pseudomonas syringae pv. tomato str. DC3000] 415 82.89 90.12 13 1768.0
85697 gb|AAN57220.1|AE015858_1 (AE015858) DNA/pantothenate metabolism flavoprotein [Shewanella oneidensis MR-1] 417 58.27 72.42 24 1117.0
GC ORFID: 44544How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5320Glimmer Score:
Start: 5526071Stop: 5527279
Length: 1209
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5320 translation of PA5320Homolog Bit Score 780.0
Other Homologs: t_PA5320 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGCGGCTCTATCGGAAACGCATCGTCCTCGGCGTGGGCGGCGGCATTGCCGCCTACAAGAGCGCCGAA
CTGGTCCGCCGCCTGCGCGACCAGGGCGCTGAAGTCCGAGTGGTGATGACCCAGGGCGGCCGCGAGTTCATC
ACGCCCCTGACCCTCCAGGCGTTGTCCGGCCATCCGGTGCACACCGATCTGCTGGACCCGGCGGCGGAAGCC
GCGATGGGCCACATCGAACTAGCCCGCTGGGCCGATCTGGTGCTGATCGCACCGGCCACCGCCGACCTCATG
GCGCGCCTGGTCCAGGGCGTGGCCAACGACCTGCTGACCACCCTGGTGCTGGCCACCGACGCGCAAATCGCC
CTGGCACCGGCGATGAACCAGGCCATGTGGCGCGACACCGCGACCCAGGCCAACGCCGAGCTGCTGCGCCAG
CGCGGCTTCCACCTGTTCGGTCCGGCAGCGGGCAGCCAGGCCTGCGGCGACGTCGGCCTCGGGCGCATGCTC
GAAGCCGAGGAACTGGCGCAGCGCGCCGCCGACTGCTTCCAGCGCCAGGCGCTGACCGGCGTGCATGTGCTG
ATCACCGCCGGCCCGACCCAGGAAAACATCGATCCGGTGCGCTACATCACCAACCACAGTTCCGGAAAGATG
GGCTTCGCCCTCGCCGAGGCGGCGGTGGAAGCCGGCGCACGGGTGACCCTGGTCACCGGCCCGGTGCACCTG
CCGACGCCCGACCGGGTGCAGCGCGTCGACGTGGTCAGCGCCCGCGACATGCTGGCCGCCTGCGAGGCGGCA
ATGCCCTGCGACCTGCTGATCGCCTCCGCGGCGGTCGCCGACTACCGCCCGGAAGTGGTCGCCGCGCACAAA
CTGAAGAAAGACCCTACCAGCGGCGAGGGCTTGCTCTTGCAGCTGGTGCGCAATCCCGACATTCTCGCCACC
CTCGCACAGCGCGAGGATCGTCCCTTCAGCGTGGGCTTCGCCGCAGAAACCGAAAACCTGCTGGACTATGCT
GCACGCAAGCTGAAGGACAAGAACCTCGACCTGATCGTCGCCAACGACGTGGCCAACCCCTCGATCGGCTTC
AACAGCGACGAGAACGCGATCACGGTGATCGACCGCGACCTGCATCCGAGCACCTTCGCCCAGACCAGCAAG
GGCAAGATCGCTCGCCAGCTGATCGCCTTCATCGCCGACCGCCTCAACCAGCAATGA