ViewGene
Locus Name:
GeneID:
Location:

GeneID:1541
TrivialName: PA14_23110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23110
PAO1 Ortholog Locus:PA3179
Sequence Length:1161
Protein Length:386
Start: 2003686
Stop: 2004846
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06567.1|AE004742_3 (AE004742) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 386/386 (100%), Positives = 386/386 (100%)
Sequence:
ATGAACGATACCCCAGAGAATCCCCACGTACCGGTCGGGGAAAAACTGCAGAAAGTCCTCGCCCGTCTCGGC
GTCGGTTCCCGGCGCGACGTAGAAGTGTGGATCGCCGAAGGTCGGGTCAACGTCAATGGCAGCGTGGCCAGC
CTCGGCCAGCGGGTCGACAGCCACGATGCGATCACCGTCGATGGCCACCTGATCCGCCGCGAAGAGGCCGCC
GAGAGTGTCCGTCGCGTGCTGATCTACAACAAGCCGGAAGGCGAGGTCTGCACCCGCGACGATCCGGAAGGC
CGCCCGACCATCTTCGACCGCCTGCCGCGCCTGCGCACCGGTCGCTGGATCAATGTCGGTCGCCTGGACATC
AATACCACCGGCCTGCTGCTGTTCACCACCGATGGCGAACTGGCCAACCGCCTGATGCATCCTTCCTATGAG
ATGGACCGTGAATACGCGGTACGGGTGCGCGGCGAGGTCACCGAAGAGATGATCGAGCGCCTGCTCAACGGC
GTGATGCTCGAGGACGGCCCGGCCAAGTTCAGCGATATCCAGCAGGCGCCGGGCGGCGAAGGCTTCAACCAC
TGGTACCACTGCGTAGTGATGGAGGGCCGCAACCGCGAGGTGCGCCGGTTGTGGGAATCCCAGGGATTGGTG
GTCAGCCGCCTGAAGCGAGTGCGTTTCGGCCCGGTGTTCCTGACCTCCGAGCTGACCATGGGCCGCTACCGC
GAAATGGACCAGCGCGAAATCGACATCCTCAGCGAGGAAGTCGGCCTCAAGCCGGTGGCGCTGCCGGGCATG
ACCACCAAGGCGCGCGAGAAGGCCGAACGCCAGCAGCGCAAGCAGGCCCGTCCGCTGGCGCGCAGCGAGCGT
CCGGAAGCCGGGCGCAAGCGTGCGCCAAGGCGCGAGGACGGCGAGAATGCCGCTCGTCGCGCGCCGGCTTCG
CGTCCCGCGCGCGGTCCGCAGCCGAGCGCCGAGCGCAAGGGGCGCGAGCAGGGCACTCCGGTTGCCGAGCGG
CCCCGCGAGAGCAACCGCAAGCCGCGCCCGAGCAAGCCGCGCGACGAGCGTCCGGCCAGCGCGCCGGGCGAC
AAGCCGGCGGCCCGCAAGCCGCAGGTCAAGCGGCGGCCGAAACCGGCCGGCGACGGTATGCGTCCGGGCTTC
CGCCGCTGA
Translation:
MNDTPENPHVPVGEKLQKVLARLGVGSRRDVEVWIAEGRVNVNGSVASLGQRVDSHDAITVDGHLIRREEAA
ESVRRVLIYNKPEGEVCTRDDPEGRPTIFDRLPRLRTGRWINVGRLDINTTGLLLFTTDGELANRLMHPSYE
MDREYAVRVRGEVTEEMIERLLNGVMLEDGPAKFSDIQQAPGGEGFNHWYHCVVMEGRNREVRRLWESQGLV
VSRLKRVRFGPVFLTSELTMGRYREMDQREIDILSEEVGLKPVALPGMTTKAREKAERQQRKQARPLARSER
PEAGRKRAPRREDGENAARRAPASRPARGPQPSAERKGREQGTPVAERPRESNRKPRPSKPRDERPASAPGD
KPAARKPQVKRRPKPAGDGMRPGFRR*
AnnotationID:1550GeneID:1541
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 06:06:11
Gene Name:
Confidence Code:3
GeneProduct:putative pseudouridine synthase
Cell Localization:()
Synonyms:yciL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative RNA pseudouridylate synthase-family protein
Functional Category Confidence Code:5
COGs:COG1187
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF94338.1| (AE004198) pseudouridine synthase family 1 protein [Vibrio
           cholerae]
          Length = 321

 Score =  313 bits (802), Expect = 1e-84
 Identities = 168/335 (50%), Positives = 223/335 (66%), Gaps = 16/335 (4%)

>dbj|BAC60214.1| (AP005079) pseudouridine synthase family 1 protein [Vibrio
           parahaemolyticus]
          Length = 312

 Score =  305 bits (782), Expect = 2e-82
 Identities = 163/309 (52%), Positives = 210/309 (67%), Gaps = 14/309 (4%)

>emb|CAC91019.1| (AJ414151) putative RNA pseudouridylate synthase-family protein
           [Yersinia pestis CO92]
          Length = 318

 Score =  301 bits (772), Expect = 3e-81
 Identities = 169/317 (53%), Positives = 222/317 (70%), Gaps = 11/317 (3%)








 
Structural Features:
COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase 
and related pseudouridylate synthases 
[Translation, ribosomal structure and biogenesis]
CD-Length = 248 residues,  99.6% aligned
Score =  252 bits (646), Expect = 4e-68
Identities = 122/251 (48%), Positives = 150/251 (59%), Gaps = 10/251 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3085




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20231




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32366




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1541_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1541
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2732
                           PA3179_tr
                           translation of PA3179
                           386
                           99.99
                           99.99
                           0
                           2014.0
     

     
     
85644
                           gb|AAG06567.1|AE004742_3
                           (AE004742) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           386
                           99.99
                           99.99
                           0
                           2014.0
     

     
     
85645
                           gb|AAF94338.1|
                           (AE004198) pseudouridine synthase family 1 protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           393
                           43.76
                           56.74
                           79
                           817.0
     

     
     
85647
                           gb|AAM85618.1|AE013808_1
                           (AE013808) hypothetical protein [Yersinia pestis KIM]
                           410
                           43.17
                           56.58
                           90
                           800.0
     

     
     
85649
                           emb|CAC91019.1|
                           (AJ414151) putative RNA pseudouridylate synthase-family protein [Yersinia pestis CO92]
                           395
                           43.03
                           56.70
                           86
                           785.0
     

     






      

          
GC ORFID: 44543How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3179Glimmer Score: 

          
Start: 2950245Stop: 2949085

          
Length: 1161


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3179 translation of PA3179Homolog Bit Score 780.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7799 (ORF: BLASTX 501.0), t_PA3179 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGATACCCCAGAGAATCCCCACGTACCGGTCGGGGAAAAACTGCAGAAAGTCCTCGCCCGTCTCGGC 
GTCGGTTCCCGGCGCGACGTAGAAGTGTGGATCGCCGAAGGTCGGGTCAACGTCAATGGCAGCGTGGCCAGC 
CTCGGCCAGCGGGTCGACAGCCACGATGCGATCACCGTCGATGGCCACCTGATCCGCCGCGAAGAGGCCGCC 
GAGAGTGTCCGTCGCGTGCTGATCTACAACAAGCCGGAAGGCGAGGTCTGCACCCGCGACGATCCGGAAGGC 
CGCCCGACCATCTTCGACCGCCTGCCGCGCCTGCGCACCGGTCGCTGGATCAATGTCGGTCGCCTGGACATC 
AATACCACCGGCCTGCTGCTGTTCACCACCGATGGCGAACTGGCCAACCGCCTGATGCATCCTTCCTATGAG 
ATGGACCGTGAATACGCGGTACGGGTGCGCGGCGAGGTCACCGAAGAGATGATCGAGCGCCTGCTCAACGGC 
GTGATGCTCGAGGACGGCCCGGCCAAGTTCAGCGATATCCAGCAGGCGCCGGGCGGCGAAGGCTTCAACCAC 
TGGTACCACTGCGTAGTGATGGAGGGCCGCAACCGCGAGGTGCGCCGGTTGTGGGAATCCCAGGGATTGGTG 
GTCAGCCGCCTGAAGCGAGTGCGTTTCGGCCCGGTGTTCCTGACCTCCGAGCTGACCATGGGCCGCTACCGC 
GAAATGGACCAGCGCGAAATCGACATCCTCAGCGAGGAAGTCGGCCTCAAGCCGGTGGCGCTGCCGGGCATG 
ACCACCAAGGCGCGCGAGAAGGCCGAACGCCAGCAGCGCAAGCAGGCCCGTCCGCTGGCGCGCAGCGAGCGT 
CCGGAAGCCGGGCGCAAGCGTGCGCCAAGGCGCGAGGACGGCGAGAATGCCGCTCGTCGCGCGCCGGCTTCG 
CGTCCCGCGCGCGGTCCGCAGCCGAGCGCCGAGCGCAAGGGGCGCGAGCAGGGCACTCCGGTTGCCGAGCGG 
CCCCGCGAGAGCAACCGCAAGCCGCGCCCGAGCAAGCCGCGCGACGAGCGTCCGGCCAGCGCGCCGGGCGAC 
AAGCCGGCGGCCCGCAAGCCGCAGGTCAAGCGGCGGCCGAAACCGGCCGGCGACGGTATGCGTCCGGGCTTC 
CGCCGCTGA