ViewGene
Locus Name:
GeneID:
Location:

GeneID:1540
TrivialName: PA14_29640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29640
PAO1 Ortholog Locus:PA2664
Sequence Length:1182
Protein Length:393
Start: 2568133
Stop: 2569314
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06052.1|AE004695_5 (AE004695) flavohemoprotein [Pseudomonas aeruginosa PAO1]
Identities = 388/393 (98%), Positives = 390/393 (99%)
Sequence:
ATGTTGTCCAATGCCCAACGTGCCCTCATCAAAGCCACCGTACCGCTGCTGGAGACCGGCGGTGAAGCGCTG
ATCACCCATTTCTACCGCACCATGCTCGGCGAGTACCCCGAGGTTCGCCCGCTGTTCAACCAGGCCCACCAG
GCCAGCGGCGACCAGCCGCGGGCGCTGGCCAATGGCGTGCTGATGTACGCCAGGCACATCGACCAGTTGCAG
GAACTCGGCCCGCTGGTGGCCAAGGTGGTGAACAAGCATGTCTCCCTGCAGGTGTTGCCCGAACACTATCCG
ATCGTCGGCACTTGCCTGTTGCGGGCGATCCGCGAGGTCCTCGGCGAACAGATCGCCACCGACGAAGTCCTC
GAAGCCTGGGGCGCGGCCTACCAGCAACTGGCCGACCTGCTGATCGAGGCCGAGGAGTCGGTGTATGCCGCC
AGCGCCCAGGCCGATGGCGGCTGGCGCGGCGTGCGGCGCTTTCACGTGGCACGCAAGCAGGCGGAGAGCGAG
GAAATCACCTCGTTCTACCTGGAGCCGGTGGACGGCCAGCCGCTGCTGGCGTTCCAGCCGGGACAGTACATC
GGCCTGCGGCTGGACATCGACGGCGAGGAAGTGCGCCGCAACTATTCGCTTTCCGCTGCCAGCAACGGCCGC
GAATACCGCATCAGCGTCAAGCGCGAGGCGGGTGGACGGGTCTCCAATCACCTGCATGACCGGGTCGCCGAG
GGCGACGAGCTGGATCTGTTTCCGCCGGCTGGCGATTTCGTCCTGCGTGACAGCGACAAGCCGCTGGTGCTG
ATCACCGCCGGCGTCGGCATCACCCCGGCCCTGGCCATGTTGCAGGAAGCGCTGCCGCAGGCGCGGCCGATC
CGCTTCATCCATTGCGCCCGGCATGGCGGCGTGCATGCCTTCCGCGACTGGATCGAAGATGTGTCGGCGCAG
CACGAGCAGGTCGAGCACTTCTTCTGCTACAGCGAACCGCGCGTCGGCGACAGTCCCGACGCCGAGGGAGTG
CTGAGCCGCGAGAAACTGGCCGACTGGTTGCCGCAGGAGCGCGACCTGGACGCCTACTTCCTCGGACCCCGG
CCTTTCATGGCGCAGGTCAAGCGCCACCTGGCCGACCTCGGCGTACCCTCGCAGCAATGCCACTACGAGTTC
TTCGGTCCGGCCGCCGCGCTGGACGCCTGA
Translation:
MLSNAQRALIKATVPLLETGGEALITHFYRTMLGEYPEVRPLFNQAHQASGDQPRALANGVLMYARHIDQLQ
ELGPLVAKVVNKHVSLQVLPEHYPIVGTCLLRAIREVLGEQIATDEVLEAWGAAYQQLADLLIEAEESVYAA
SAQADGGWRGVRRFHVARKQAESEEITSFYLEPVDGQPLLAFQPGQYIGLRLDIDGEEVRRNYSLSAASNGR
EYRISVKREAGGRVSNHLHDRVAEGDELDLFPPAGDFVLRDSDKPLVLITAGVGITPALAMLQEALPQARPI
RFIHCARHGGVHAFRDWIEDVSAQHEQVEHFFCYSEPRVGDSPDAEGVLSREKLADWLPQERDLDAYFLGPR
PFMAQVKRHLADLGVPSQQCHYEFFGPAAALDA*
AnnotationID:1549GeneID:1540
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 19:07:48
Gene Name:fhp
Confidence Code:2
GeneProduct:flavohemoprotein
Cell Localization:()
Synonyms:hmpA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1017,COG1018
Secondary Functional Category(ies):
EC Number:1.14.12.17
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66433.1|AE016273_2 (AE016777) flavohemoprotein [Pseudomonas putida KT2440]
          Length = 392

 Score =  573 bits (1476), Expect = e-163
 Identities = 275/392 (70%), Positives = 324/392 (82%)

>gb|AAF12394.1|AE001863_19 (AE001863) flavohemoprotein [Deinococcus radiodurans]
          Length = 403

 Score =  341 bits (875), Expect = 4e-93
 Identities = 196/397 (49%), Positives = 256/397 (64%), Gaps = 12/397 (3%)








 
Structural Features:
COG1017, Hmp, Hemoglobin-like flavoprotein 
[Energy production and conversion]
CD-Length = 150 residues, 100.0% aligned
Score =  223 bits (570), Expect = 2e-59
Identities = 86/151 (56%), Positives = 112/151 (74%), Gaps = 1/151 (0%)

COG1018, Hmp, Flavodoxin reductases 
(ferredoxin-NADPH reductases) family 1 
[Energy production and conversion]
CD-Length = 266 residues,  87.6% aligned
Score =  219 bits (558), Expect = 6e-58
Identities = 95/241 (39%), Positives = 129/241 (53%), Gaps = 11/241 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3083




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20229




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36357




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1540_cdd.html


    		




 
URL:

















    ReferenceID:36359




  
Author/Investigator(s):
        Liu J, Magasanik B.





  
Title:
        The glnB region of the Escherichia coli chromosome.




  
PubMed:
        8226691


MedLine:
        




    
Source:
J Bacteriol. 1993 Nov;175(22):7441-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8226691

















    ReferenceID:36360




  
Author/Investigator(s):
        Cramm R, Siddiqui RA, Friedrich B.





  
Title:
        Primary sequence and evidence for a physiological function of the flavohemoprotein of Alcaligenes eutrophus.




  
PubMed:
        8125952


MedLine:
        




    
Source:
J Biol Chem. 1994 Mar 11;269(10):7349-54.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8125952









           
Homologs By Global Alignment 

           

       



     
Gene ID:1540
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2731
                           PA2664_tr
                           translation of PA2664
                           393
                           98.72
                           99.23
                           0
                           2015.0
     

     
     
85593
                           gb|AAG06052.1|AE004695_5
                           (AE004695) flavohemoprotein [Pseudomonas aeruginosa PAO1]
                           393
                           98.72
                           99.23
                           0
                           2015.0
     

     
     
85594
                           gb|AAN66433.1|AE016273_2
                           (AE016777) flavohemoprotein [Pseudomonas putida KT2440]
                           393
                           69.97
                           82.44
                           1
                           1476.0
     

     
     
85595
                           dbj|BAC16771.1|
                           (AB035325) flavohemoprotein homolog [Burkholderia sp. TH2]
                           394
                           68.52
                           79.44
                           2
                           1421.0
     

     
     
85601
                           emb|CAE36938.1|
                           (BX640428) flavohemoprotein; putative flavohemoprotein [Bordetella parapertussis]
                           408
                           49.01
                           59.80
                           21
                           865.0
     

     






      

          
GC ORFID: 44542How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2664Glimmer Score: 

          
Start: 2385793Stop: 2384612

          
Length: 1182


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2664 translation of PA2664Homolog Bit Score 780.0

          
Other Homologs:  t_PA2664 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGTCCAATGCCCAACGTGCCCTCATCAAAGCCACCGTACCGCTGCTGGAGACCGGCGGTGAAGCGCTG 
ATCACCCATTTCTACCGCACCATGCTCGGCGAGTACCCCGAGGTTCGCCCGCTGTTCAACCAGGCCCACCAG 
GCCAGCGGCGACCAGCCGCGGGCGCTGGCCAATGGCGTGCTGATGTACGCCAGGCACATCGACCAGTTGCAG 
GAACTCGGCCCGCTGGTGGCCAAGGTGGTGAACAAGCATGTCTCCCTGCAGGTGTTGCCCGAACACTATCCG 
ATCGTCGGCACTTGCCTGTTGCGGGCGATCCGCGAGGTCCTCGGCGAACAGATCGCCACCGACGAAGTCCTC 
GAAGCCTGGGGCGCGGCCTACCAGCAACTGGCCGACCTGCTGATCGAGGCCGAGGAGTCGGTGTATGCCGCC 
AGCGCCCAGGCCGATGGCGGCTGGCGCGGCGTGCGGCGCTTTCACGTGGCACGCAAGCAGGCGGAGAGCGAG 
GAAATCACCTCGTTCTACCTGGAGCCGGTGGACGGCCAGCCGCTGCTGGCGTTCCAGCCGGGACAGTACATC 
GGCCTGCGGCTGGACATCGACGGCGAGGAAGTGCGCCGCAACTATTCGCTTTCCGCTGCCAGCAACGGCCGC 
GAATACCGCATCAGCGTCAAGCGCGAGGCGGGTGGACGGGTCTCCAATCACCTGCATGACCGGGTCGCCGAG 
GGCGACGAGCTGGATCTGTTTCCGCCGGCTGGCGATTTCGTCCTGCGTGACAGCGACAAGCCGCTGGTGCTG 
ATCACCGCCGGCGTCGGCATCACCCCGGCCCTGGCCATGTTGCAGGAAGCGCTGCCGCAGGCGCGGCCGATC 
CGCTTCATCCATTGCGCCCGGCATGGCGGCGTGCATGCCTTCCGCGACTGGATCGAAGATGTGTCGGCGCAG 
CACGAGCAGGTCGAGCACTTCTTCTGCTACAGCGAACCGCGCGTCGGCGACAGTCCCGACGCCGAGGGAGTG 
CTGAGCCGCGAGAAACTGGCCGACTGGTTGCCGCAGGAGCGCGACCTGGACGCCTACTTCCTCGGACCCCGG 
CCTTTCATGGCGCAGGTCAAGCGCCACCTGGCCGACCTCGGCGTACCCTCGCAGCAATGCCACTACGAGTTC 
TTCGGTCCGGCCGCCGCGCTGGACGCCTGA