ViewGene
Locus Name:
GeneID:
Location:

GeneID:1539
TrivialName: PA14_42090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42090
PAO1 Ortholog Locus:PA1736
Sequence Length:1206
Protein Length:401
Start: 3755824
Stop: 3754619
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05125.1|AE004600_1 (AE004600) probable acyl-CoA thiolase [Pseudomonas aeruginosa PAO1]
Identities = 401/401 (100%), Positives = 401/401 (100%)
Sequence:
ATGACCGACGCATTCATTTACGACGCCGTGCGTACTCCCCGCGGCAAGGGCAAGAAGGATGGCGCGCTGCAC
AGCGTCAAGCCGGTGAACCTGATGGCCGGGCTGTTGCGCGCGGTCCAGCGGCGCAACGACCTGGATACCGCC
CAGGTCGACGATATCGTGCTCGGCTGCGTGACGCCGGTGGGCGACCAGGGCGCCGATATCGCCAAGACCGCG
GCGCTGGTGGCCGACTGGGACGAACAGGTTGCCGGCGTGCAGATCAACCGTTTCTGCGCCTCCGGCCTGGAG
GCGGTGAACCTGGGGGCGATGAAGGTACGCTCCGGCTTCGAGGACCTGGTCCTGGTCGGTGGCGTCGAGTCC
ATGTCACGCGTGCCGATGGGCTCCGACGGCGGCGCCTGGGCACTGGATCCGGAAACCAACCTGCACACCAGC
TTCGTCCCGCAAGGGATCGGCGCCGACCTGATCGCCACTCTGGAAGGCTTCAGTCGCGCCGATGTCGATGCC
TTCGCCCTGCGCTCCCAGCAGAAGGCTGCCAAGGCCCGCGCCGAAGGGCTGTTCGGCAAGTCGCTGGTGCCG
GTCGCCGACCAGAACGGCATCGTCCTGCTCGACCACGATGAGTTCATTCGCGCCGACTCCACCCTGGAAGGG
CTCGCCGCGCTCAAACCGAGTTTCGAGATGATGGGGCAGATGGGCTTCGACGCCACCGCGCTGCGCAAGTAC
AGCCAGGTCGAGCGCATCGAGCACGTGCATACGCCGGGCAACAGCTCGGGGATCGTCGACGGCGCCAGCGCC
ATGCTCATCGGCTCCGAGGCCAAGGGCCGCGAACTGGGCCTGAAGGCGCGGGCGCGGATCGTCGCTACCGCG
GTGACCTCCACCGACCCCACCATCATGCTTACCGGCCCCGCGCCGGCGACCCGCAAGGCCCTGGCCAAGGCC
GGCCTGAAGGTGGAAGACATCGACCTGTTCGAAGTCAACGAGGCGTTCGCTTCGGTGGTGATGAAATTCATG
AAGGACATGGGCGTGGCGGAAAGCAAGGTCAACGTCAACGGCGGCGCCATCGCCATGGGCCACCCGCTCGGC
GCCACCGGCTGCATCATCCTCGGCACGCTGCTCGACGAACTGGAGCGGCGCAACCTGCGCTACGGCCTGGCC
ACCCTCTGCGTAGGTGGCGGCATGGGCATCGCCACCATCATCGAGCGCGTGTGA
Translation:
MTDAFIYDAVRTPRGKGKKDGALHSVKPVNLMAGLLRAVQRRNDLDTAQVDDIVLGCVTPVGDQGADIAKTA
ALVADWDEQVAGVQINRFCASGLEAVNLGAMKVRSGFEDLVLVGGVESMSRVPMGSDGGAWALDPETNLHTS
FVPQGIGADLIATLEGFSRADVDAFALRSQQKAAKARAEGLFGKSLVPVADQNGIVLLDHDEFIRADSTLEG
LAALKPSFEMMGQMGFDATALRKYSQVERIEHVHTPGNSSGIVDGASAMLIGSEAKGRELGLKARARIVATA
VTSTDPTIMLTGPAPATRKALAKAGLKVEDIDLFEVNEAFASVVMKFMKDMGVAESKVNVNGGAIAMGHPLG
ATGCIILGTLLDELERRNLRYGLATLCVGGGMGIATIIERV*
AnnotationID:1548GeneID:1539
AnnotatorUID: diggins
Modification Date/Time: 2005-06-02 07:07:38
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA thiolase
Cell Localization:()
Synonyms:PA1736
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00751
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB39721.1| (AL939129) probable acetyl coA acetyltransferase (thiolase)
           [Streptomyces coelicolor A3(2)]
          Length = 404

 Score =  546 bits (1406), Expect = e-154
 Identities = 276/402 (68%), Positives = 335/402 (83%), Gaps = 2/402 (0%)

>emb|CAC31117.1| (AL583924) putative beta-ketoadipyl CoA thiolase [Mycobacterium
           leprae]
          Length = 403

 Score =  528 bits (1359), Expect = e-149
 Identities = 267/401 (66%), Positives = 321/401 (80%), Gaps = 3/401 (0%)

>dbj|BAC46424.1| (AP005939) acyl-CoA thiolase [Bradyrhizobium japonicum USDA 110]
          Length = 402

 Score =  451 bits (1161), Expect = e-126
 Identities = 232/402 (57%), Positives = 298/402 (74%), Gaps = 1/402 (0%)






 
Structural Features:
cd00751, thiolase
CD-Length = 386 residues, 100.0% aligned
Score =  422 bits (1086), Expect = 4e-119






   
Genomic Context:






   
Comment:


















    ReferenceID:3081




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20227




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37139




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1539_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1539
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2729
                           PA1736_tr
                           translation of PA1736
                           401
                           99.99
                           99.99
                           0
                           2013.0
     

     
     
85479
                           gb|AAG05125.1|AE004600_1
                           (AE004600) probable acyl-CoA thiolase [Pseudomonas aeruginosa PAO1]
                           401
                           99.99
                           99.99
                           0
                           2013.0
     

     
     
85480
                           emb|CAB39721.1|
                           (AL939129) probable acetyl coA acetyltransferase (thiolase) [Streptomyces coelicolor A3(2)]
                           404
                           68.31
                           82.92
                           3
                           1409.0
     

     
     
85481
                           emb|CAB40681.1|
                           (AL939129) putative thiolase [Streptomyces coelicolor A3(2)]
                           404
                           67.82
                           82.17
                           3
                           1391.0
     

     
     
85482
                           dbj|BAC69392.1|
                           (AP005027) putative acyl-CoA thiolase [Streptomyces avermitilis MA-4680]
                           404
                           66.83
                           81.93
                           3
                           1383.0
     

     






      

          
GC ORFID: 44541How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1736Glimmer Score: 

          
Start: 1198085Stop: 1199290

          
Length: 1206


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1736 translation of PA1736Homolog Bit Score 780.0

          
Other Homologs:  t_PA0228 (ORF: BLASTX 263.0), t_PA1736 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGACGCATTCATTTACGACGCCGTGCGTACTCCCCGCGGCAAGGGCAAGAAGGATGGCGCGCTGCAC 
AGCGTCAAGCCGGTGAACCTGATGGCCGGGCTGTTGCGCGCGGTCCAGCGGCGCAACGACCTGGATACCGCC 
CAGGTCGACGATATCGTGCTCGGCTGCGTGACGCCGGTGGGCGACCAGGGCGCCGATATCGCCAAGACCGCG 
GCGCTGGTGGCCGACTGGGACGAACAGGTTGCCGGCGTGCAGATCAACCGTTTCTGCGCCTCCGGCCTGGAG 
GCGGTGAACCTGGGGGCGATGAAGGTACGCTCCGGCTTCGAGGACCTGGTCCTGGTCGGTGGCGTCGAGTCC 
ATGTCACGCGTGCCGATGGGCTCCGACGGCGGCGCCTGGGCACTGGATCCGGAAACCAACCTGCACACCAGC 
TTCGTCCCGCAAGGGATCGGCGCCGACCTGATCGCCACTCTGGAAGGCTTCAGTCGCGCCGATGTCGATGCC 
TTCGCCCTGCGCTCCCAGCAGAAGGCTGCCAAGGCCCGCGCCGAAGGGCTGTTCGGCAAGTCGCTGGTGCCG 
GTCGCCGACCAGAACGGCATCGTCCTGCTCGACCACGATGAGTTCATTCGCGCCGACTCCACCCTGGAAGGG 
CTCGCCGCGCTCAAACCGAGTTTCGAGATGATGGGGCAGATGGGCTTCGACGCCACCGCGCTGCGCAAGTAC 
AGCCAGGTCGAGCGCATCGAGCACGTGCATACGCCGGGCAACAGCTCGGGGATCGTCGACGGCGCCAGCGCC 
ATGCTCATCGGCTCCGAGGCCAAGGGCCGCGAACTGGGCCTGAAGGCGCGGGCGCGGATCGTCGCTACCGCG 
GTGACCTCCACCGACCCCACCATCATGCTTACCGGCCCCGCGCCGGCGACCCGCAAGGCCCTGGCCAAGGCC 
GGCCTGAAGGTGGAAGACATCGACCTGTTCGAAGTCAACGAGGCGTTCGCTTCGGTGGTGATGAAATTCATG 
AAGGACATGGGCGTGGCGGAAAGCAAGGTCAACGTCAACGGCGGCGCCATCGCCATGGGCCACCCGCTCGGC 
GCCACCGGCTGCATCATCCTCGGCACGCTGCTCGACGAACTGGAGCGGCGCAACCTGCGCTACGGCCTGGCC 
ACCCTCTGCGTAGGTGGCGGCATGGGCATCGCCACCATCATCGAGCGCGTGTGA