ViewGene
Locus Name:
GeneID:
Location:

GeneID:1538
TrivialName: PA14_63970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63970
PAO1 Ortholog Locus:PA4838
Sequence Length:1155
Protein Length:384
Start: 5700625
Stop: 5701779
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08223.1|AE004897_1 (AE004897) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 383/384 (99%), Positives = 384/384 (100%)
Sequence:
ATGCCCAACTCCATCTCCAATTCCTCCCGCCTGCACAGCATCGACGCCCTGCGCGGCCTGGTGATGCTGTTC
ATGCTGCTCGACCATGTCCGCGAGACCTTTTTCCTGCACCGCCAGGTCGGCGACCCGATGGACGTCGCCAGC
ACCGAGCCGGCGCTGTTCCTCAGCCGCACCCTGGCGCACCTGTGCGCGCCGGTGTTCGTCTTCCTCACCGGC
CTGTCGGCATTCCTCTACGGCGAGAAGCACCAGGGACGCCGGGCGGTCTCGGCGTTCCTGTTCAAGCGCGGG
TTGTTCCTGGTGGCGCTGGAACTGACCCTGGTGAACTTCGCCTGGACCTTCCAGTTGCCGCCGACGGTGATC
TACCTCCAGGTGATCTGGGCGATCGGCCTGAGCATGCTCGCCCTGGCCGCCCTGCTCTGGTTGCCGCGCCCT
CTGCTCGCGGCGCTCGGCGTGCTGCTGGTGGCCGGCCACAACCTGCTCGATCCGCTGCATTTCGCTCCCGGC
TCGGCCTGGCACCTGCCGTGGGCGGTGCTCCACGACCGCGGCTGGATCGAAGCGGGCGACGCCCTGCGCCTG
CGCACCTCCTACCCCCTGCTGCCGTGGATCGGTGTGATCGCCCTGGGCTATGCCGCAGGCAACTGGTTCAGC
GGCGCCACGCCGGCGACCACGCGCCGACGCTACCTGCTGGCGGGCGGTGGCGGGCTGCTGCTCGGCTTCATC
CTGCTGCGCCTGCTCAACGGCTATGGCGAGAAACCCTGGGCCTTCGGCGAGACGCCGGCGATCACCCTGATG
GGCTTCTTCAACGTCACCAAGTATCCGCCGTCGCTGCTGTTCCTCGCCCTCACCCTGGGAATCGGCCTGCTG
CTCCTGGCCTGGTTCGAACGCCTGGACTGGAGCGGTCGCGGCAAGGCCCTGGTGGCGTTCGGCGGAGCGCCG
ATGTTCTTCTACCTGCTGCATCTCTACCTACTGAAGCTGCTGTACCTGCTGGCGCTGGCGATCTGGGGCGCC
AACCGGGGCGACTACTTCGGTTTCTCCTCGGTGCCGGCGCTATGGCTGTGCAGCATCCTGCTGGCCGTGGCG
CTGTACCCGGCGGTGAACTGGTTCGCCGGTTTCAAGGCGCGGCGGCGGGATATCGCCTGGTTGAAGTACTTC
TGA
Translation:
MPNSISNSSRLHSIDALRGLVMLFMLLDHVRETFFLHRQVGDPMDVASTEPALFLSRTLAHLCAPVFVFLTG
LSAFLYGEKHQGRRAVSAFLFKRGLFLVALELTLVNFAWTFQLPPTVIYLQVIWAIGLSMLALAALLWLPRP
LLAALGVLLVAGHNLLDPLHFAPGSAWHLPWAVLHDRGWIEAGDALRLRTSYPLLPWIGVIALGYAAGNWFS
GATPATTRRRYLLAGGGGLLLGFILLRLLNGYGEKPWAFGETPAITLMGFFNVTKYPPSLLFLALTLGIGLL
LLAWFERLDWSGRGKALVAFGGAPMFFYLLHLYLLKLLYLLALAIWGANRGDYFGFSSVPALWLCSILLAVA
LYPAVNWFAGFKARRRDIAWLKYF*
AnnotationID:1547GeneID:1538
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:57
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4838
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3503
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56085.1| (AE016865) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 388

 Score =  555 bits (1431), Expect = e-157
 Identities = 266/376 (70%), Positives = 312/376 (82%)

>gb|AAN68031.1|AE016435_8 (AE016783) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 421

 Score =  521 bits (1343), Expect = e-147
 Identities = 262/377 (69%), Positives = 295/377 (78%), Gaps = 2/377 (0%)








 
Structural Features:
COG3503, COG3503, Predicted membrane protein
CD-Length = 323 residues, 100.0% aligned
Score =  256 bits (656), Expect = 3e-69
Identities = 150/353 (42%), Positives = 174/353 (49%), Gaps = 36/353 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3079




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20225




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35209




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1538_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1538
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2728
                           PA4838_tr
                           translation of PA4838
                           384
                           99.73
                           99.99
                           0
                           2016.0
     

     
     
85472
                           gb|AAG08223.1|AE004897_1
                           (AE004897) hypothetical protein PA4838 [Pseudomonas aeruginosa PAO1]
                           384
                           99.73
                           99.99
                           0
                           2016.0
     

     
     
85473
                           gb|AAO56085.1|
                           (AE016865) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           388
                           68.55
                           81.18
                           4
                           1426.0
     

     
     
85474
                           gb|AAN68031.1|AE016435_8
                           (AE016783) membrane protein, putative [Pseudomonas putida KT2440]
                           426
                           62.20
                           71.12
                           47
                           1346.0
     

     
     
85475
                           emb|CAD16435.1|
                           (AL646071) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           387
                           53.74
                           64.59
                           8
                           999.0
     

     






      

          
GC ORFID: 44540How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4838Glimmer Score: 

          
Start: 4964305Stop: 4965459

          
Length: 1155


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4838 translation of PA4838Homolog Bit Score 781.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1234 (ORF: BLASTX 551.0), t_PA4838 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAACTCCATCTCCAATTCCTCCCGCCTGCACAGCATCGACGCCCTGCGCGGCCTGGTGATGCTGTTC 
ATGCTGCTCGACCATGTCCGCGAGACCTTTTTCCTGCACCGCCAGGTCGGCGACCCGATGGACGTCGCCAGC 
ACCGAGCCGGCGCTGTTCCTCAGCCGCACCCTGGCGCACCTGTGCGCGCCGGTGTTCGTCTTCCTCACCGGC 
CTGTCGGCATTCCTCTACGGCGAGAAGCACCAGGGACGCCGGGCGGTCTCGGCGTTCCTGTTCAAGCGCGGG 
TTGTTCCTGGTGGCGCTGGAACTGACCCTGGTGAACTTCGCCTGGACCTTCCAGTTGCCGCCGACGGTGATC 
TACCTCCAGGTGATCTGGGCGATCGGCCTGAGCATGCTCGCCCTGGCCGCCCTGCTCTGGTTGCCGCGCCCT 
CTGCTCGCGGCGCTCGGCGTGCTGCTGGTGGCCGGCCACAACCTGCTCGATCCGCTGCATTTCGCTCCCGGC 
TCGGCCTGGCACCTGCCGTGGGCGGTGCTCCACGACCGCGGCTGGATCGAAGCGGGCGACGCCCTGCGCCTG 
CGCACCTCCTACCCCCTGCTGCCGTGGATCGGTGTGATCGCCCTGGGCTATGCCGCAGGCAACTGGTTCAGC 
GGCGCCACGCCGGCGACCACGCGCCGACGCTACCTGCTGGCGGGCGGTGGCGGGCTGCTGCTCGGCTTCATC 
CTGCTGCGCCTGCTCAACGGCTATGGCGAGAAACCCTGGGCCTTCGGCGAGACGCCGGCGATCACCCTGATG 
GGCTTCTTCAACGTCACCAAGTATCCGCCGTCGCTGCTGTTCCTCGCCCTCACCCTGGGAATCGGCCTGCTG 
CTCCTGGCCTGGTTCGAACGCCTGGACTGGAGCGGTCGCGGCAAGGCCCTGGTGGCGTTCGGCGGAGCGCCG 
ATGTTCTTCTACCTGCTGCATCTCTACCTACTGAAGCTGCTGTACCTGCTGGCGCTGGCGATCTGGGGCGCC 
AACCGGGGCGACTACTTCGGTTTCTCCTCGGTGCCGGCGCTATGGCTGTGCAGCATCCTGCTGGCCGTGGCG 
CTGTACCCGGCGGTGAACTGGTTCGCCGGTTTCAAGGCGCGGCGGCGGGATATCGCCTGGTTGAAGTACTTC 
TGA