ViewGene
Locus Name:
GeneID:
Location:

GeneID:1537
TrivialName: PA14_62480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62480
PAO1 Ortholog Locus:PA4722
Sequence Length:1173
Protein Length:390
Start: 5574124
Stop: 5572952
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08108.1|AE004885_13 (AE004885) probable aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 388/390 (99%), Positives = 388/390 (99%)
Sequence:
ATGGCTACCTCCTATAGCGCGCGCAGTCGGGCCATCGAGCCTTTCCATGTTATGGCCCTGCTGGCGCGGGCC
AACGAGTTGCAGGCCGCCGGCCACGATGTGATCCACCTGGAGATCGGCGAGCCGGACTTCACCACGGCCGAG
CCGATCGTCGAGGCCGGGCGCGCCGCCCTGGCCGCCGGGCATACCCGCTACACCGCCGCCCGCGGCCTGCCG
GCGCTGCGCGAGGCGATCGCGAAATTCTACGGCGAACGCTACGGGGTCGACCTCGACCCGCAGCGCGTGCTG
GTCACTCCGGGCGGCTCCGGCGCCCTGCTGCTGGCCAGCAGCTTGCTGGTCGACCCCGGCCGCCACTGGTTG
CTCGCCGACCCGGGCTACCCGTGCAACAGGCATTTCCTGCGCCTGGTGGAAGGCGCCGCGCAACTGGTGCCG
GTGGGGCCGGACAGCCGTTACCAACTGACGCCGGATCTCATCGAGCGACACTGGGATTCAGACAGTGTAGGC
GCTCTGGTGGCGACGCCGGCGAATCCGACCGGGACCCTGCTCGATCGCGACGAACTGGCCGGCCTGTCGGGC
GCCTTGAAGGCCCGCGGCGGGCACCTGGTGGTGGACGAGATCTATCACGGCCTGACCTATGGCGTGGACGCC
GCCTCGGTGCTGGAAGTCGACGACGACGCTTTCGTCCTGAATAGTTTTTCCAAGTATTTCGGCATGACCGGC
TGGCGCCTGGGCTGGCTGGTGGCGCCGGCAGCGGCGGTGCCTGAGCTGGAGAAGCTGGCGCAGAACCTCTAC
ATCAGCGCGCCGAGCATGGCCCAGCAGGCCGCGCTGGCCTGTTTCGAGCCGACCACCATCGCCATTCTCGAA
GAGCGTCGCGAAGAGTTCGCCCGCCGTCGCGACTTCCTCCTGCCGGCCCTGCGCGAGCTGGGTTTCGGAATC
GCCGTGGAGCCGGAAGGCGCCTTCTATCTCTACGCCGATATCAGTGCGTTCGGCGGCGATGCCTACGCCTTC
TGCAAGCACTTCATCGAGACCGAGCACGTGGCCTTCACCCCGGGGCTGGATTTCGGCCGCCACCAGGCCGGC
CACCACGTGCGTTTCGCCTATACCCAGAACCTGTCGCGCCTGCAGGAAGCGGTGGAGCGGATCGCCCGCGGC
CTGAAGAACTGGCGGCCCTGA
Translation:
MATSYSARSRAIEPFHVMALLARANELQAAGHDVIHLEIGEPDFTTAEPIVEAGRAALAAGHTRYTAARGLP
ALREAIAKFYGERYGVDLDPQRVLVTPGGSGALLLASSLLVDPGRHWLLADPGYPCNRHFLRLVEGAAQLVP
VGPDSRYQLTPDLIERHWDSDSVGALVATPANPTGTLLDRDELAGLSGALKARGGHLVVDEIYHGLTYGVDA
ASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPAAAVPELEKLAQNLYISAPSMAQQAALACFEPTTIAILE
ERREEFARRRDFLLPALRELGFGIAVEPEGAFYLYADISAFGGDAYAFCKHFIETEHVAFTPGLDFGRHQAG
HHVRFAYTQNLSRLQEAVERIARGLKNWRP*
AnnotationID:1546GeneID:1537
AnnotatorUID: diggins
Modification Date/Time: 2005-05-24 12:12:05
Gene Name:
Confidence Code:3
GeneProduct:putative aminotransferase
Cell Localization:()
Synonyms:aspC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative aspartate aminotransferase
Functional Category Confidence Code:5
COGs:COG0436
Secondary Functional Category(ies):transport of small molecules
EC Number:2.6.1.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54504.1| (AE016859) aminotransferase, classes I and II [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 390

 Score =  681 bits (1756), Expect = 0.0
 Identities = 332/388 (85%), Positives = 359/388 (92%)

>gb|AAN70265.1|AE016666_9 (AE016791) aminotransferase, class I [Pseudomonas putida KT2440]
          Length = 390

 Score =  670 bits (1729), Expect = 0.0
 Identities = 325/389 (83%), Positives = 357/389 (91%)

>gb|AAM35519.1| (AE011691) aminotransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 394

 Score =  625 bits (1611), Expect = e-178
 Identities = 309/385 (80%), Positives = 339/385 (88%)






 
Structural Features:
COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase 
[Amino acid transport and metabolism]
CD-Length = 393 residues,  99.7% aligned
Score =  334 bits (857), Expect = 1e-92
Identities = 149/393 (37%), Positives = 211/393 (53%), Gaps = 12/393 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3077




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20223




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37639




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1537_cdd.html


    		




 
URL:

















    ReferenceID:38166




  
Author/Investigator(s):
        Kuramitsu S, Okuno S, Ogawa T, Ogawa H, Kagamiyama H.





  
Title:
        Aspartate aminotransferase of Escherichia coli: nucleotide sequence of the aspC gene.




  
PubMed:
        3897210


MedLine:
        




    
Source:
J Biochem (Tokyo). 1985 Apr;97(4):1259-62.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3897210&query_hl=13









           
Homologs By Global Alignment 

           

       



     
Gene ID:1537
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2727
                           PA4722_tr
                           translation of PA4722
                           390
                           99.48
                           99.48
                           0
                           2018.0
     

     
     
85454
                           gb|AAG08108.1|AE004885_13
                           (AE004885) probable aminotransferase [Pseudomonas aeruginosa PAO1]
                           390
                           99.48
                           99.48
                           0
                           2018.0
     

     
     
85455
                           gb|AAO54504.1|
                           (AE016859) aminotransferase, classes I and II [Pseudomonas syringae pv. tomato str. DC3000]
                           390
                           85.12
                           92.05
                           0
                           1754.0
     

     
     
85456
                           gb|AAN70265.1|AE016666_9
                           (AE016791) aminotransferase, class I [Pseudomonas putida KT2440]
                           390
                           83.33
                           91.53
                           0
                           1727.0
     

     
     
85457
                           gb|AAM35519.1|
                           (AE011691) aminotransferase [Xanthomonas axonopodis pv. citri str. 306]
                           396
                           78.03
                           85.60
                           8
                           1608.0
     

     






      

          
GC ORFID: 44539How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4722Glimmer Score: 

          
Start: 4837804Stop: 4836632

          
Length: 1173


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4722 translation of PA4722Homolog Bit Score 781.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene2506 (ORF: BLASTX 684.0), t_PA4722 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTACCTCCTATAGCGCGCGCAGTCGGGCCATCGAGCCTTTCCATGTTATGGCCCTGCTGGCGCGGGCC 
AACGAGTTGCAGGCCGCCGGCCACGATGTGATCCACCTGGAGATCGGCGAGCCGGACTTCACCACGGCCGAG 
CCGATCGTCGAGGCCGGGCGCGCCGCCCTGGCCGCCGGGCATACCCGCTACACCGCCGCCCGCGGCCTGCCG 
GCGCTGCGCGAGGCGATCGCGAAATTCTACGGCGAACGCTACGGGGTCGACCTCGACCCGCAGCGCGTGCTG 
GTCACTCCGGGCGGCTCCGGCGCCCTGCTGCTGGCCAGCAGCTTGCTGGTCGACCCCGGCCGCCACTGGTTG 
CTCGCCGACCCGGGCTACCCGTGCAACAGGCATTTCCTGCGCCTGGTGGAAGGCGCCGCGCAACTGGTGCCG 
GTGGGGCCGGACAGCCGTTACCAACTGACGCCGGATCTCATCGAGCGACACTGGGATTCAGACAGTGTAGGC 
GCTCTGGTGGCGACGCCGGCGAATCCGACCGGGACCCTGCTCGATCGCGACGAACTGGCCGGCCTGTCGGGC 
GCCTTGAAGGCCCGCGGCGGGCACCTGGTGGTGGACGAGATCTATCACGGCCTGACCTATGGCGTGGACGCC 
GCCTCGGTGCTGGAAGTCGACGACGACGCTTTCGTCCTGAATAGTTTTTCCAAGTATTTCGGCATGACCGGC 
TGGCGCCTGGGCTGGCTGGTGGCGCCGGCAGCGGCGGTGCCTGAGCTGGAGAAGCTGGCGCAGAACCTCTAC 
ATCAGCGCGCCGAGCATGGCCCAGCAGGCCGCGCTGGCCTGTTTCGAGCCGACCACCATCGCCATTCTCGAA 
GAGCGTCGCGAAGAGTTCGCCCGCCGTCGCGACTTCCTCCTGCCGGCCCTGCGCGAGCTGGGTTTCGGAATC 
GCCGTGGAGCCGGAAGGCGCCTTCTATCTCTACGCCGATATCAGTGCGTTCGGCGGCGATGCCTACGCCTTC 
TGCAAGCACTTCATCGAGACCGAGCACGTGGCCTTCACCCCGGGGCTGGATTTCGGCCGCCACCAGGCCGGC 
CACCACGTGCGTTTCGCCTATACCCAGAACCTGTCGCGCCTGCAGGAAGCGGTGGAGCGGATCGCCCGCGGC 
CTGAAGAACTGGCGGCCCTGA