ViewGene
Locus Name:
GeneID:
Location:

GeneID:1535
TrivialName: PA14_21010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21010
PAO1 Ortholog Locus:PA3328
Sequence Length:1167
Protein Length:388
Start: 1809620
Stop: 1808454
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06716.1|AE004755_3 (AE004755) probable FAD-dependent monooxygenase [Pseudomonas aeruginosa PAO1]
Identities = 388/388 (100%), Positives = 388/388 (100%)
Sequence:
ATGAGCAGACATCCCCTGAAGATCGTCATCGCCGGCGCCGGCATCGGCGGGCTCGCCGCGGCCGCCTGCCTG
AAGGCCGCCGGCTTCGAGGTCGAACTCTACGAGCGGGCCAGGGAGCTGCGCGCGGTCGGCTCGGCGCTGTCG
CTGATGCCCAACGCGCTGACCGCCCTGGAGAGGGTCGGCGTGCGCCCTGACCTTACCCGCGCCCAGGCCTTC
GACTCGCTACGGTTCCTCACCCGGCGCGGGCGACCGATCCGCGCCATCGACTTCGGCGGCCTGGCCCGCCAG
CTCGGCCAGCCGAGCCTGGCGATCCACCGCGCGAGCCTGCAGCAGGCGCTGCTGGAACAGGCCCGCGACTGC
CGCATCGAACTGGGCGTGAGCGCCACCGGCTACCTGCGCCACGCCGACGGCGAAGGCGTCACCGTGCTCTGC
AGCGACGGCCGCGAAGTGCACGCCGACGTGCTGATCGGCGCGGACGGCTTCAACTCGGCGATCCGCGCCACC
ATGACCGGCCCGGAGCGTCCCACCGACTGGCACTACGTGATCTGGCGCGCCACGCCGGCGTTCCGCCATCCG
AAGGTGACGCCGGGCTACGTCGCCCATTACTGGGGTCGTGGGCAGCGCTTCGGTCTCGCCGACATCGGCGAA
GGCAACGTCTATTGGTGGGGCACCCGCAACATGCCGGCCGAACAGGCGAAGGACTGGCGCGGCGGCAAGGCG
GGCATCCAGCGCCTCTACGCCGGCTGGGCCGACGAAGTGCAGGCGGTCATCGAGGCGACCCCGGAGGCCGAC
ATCAGCAGCCTGCCGGCCCAGGACCGACCGTTCCTCGAGCGCTGGGGCGACGGCCCGGTGACCCTGCTCGGC
GATGCCGCGCATCCGATGCTGACCAGCCTCGGCCAGGGCGCCGCCATCGCCATCGAAGACGCCGCGGTGCTG
GCCCACTGCCTGGCCACCATCGACGACCCGCAAGCCGCCCTGCGCGCCTACGAGAACCGCCGTCGCGACCGC
GCCAGGGCGATGGTCGAGACCTCGCGGGCGCTGAGCCGCATCGAGCAGTTGGAGCATCCGCTGCGCACCGTC
GCCCGCGATCTCTACTTCCGCTTCGCTCCGGAGCGAACCTTCGCCCGGCAGAACGAACTGGCACTGACCTTC
CCAGGAGTCGAATGA
Translation:
MSRHPLKIVIAGAGIGGLAAAACLKAAGFEVELYERARELRAVGSALSLMPNALTALERVGVRPDLTRAQAF
DSLRFLTRRGRPIRAIDFGGLARQLGQPSLAIHRASLQQALLEQARDCRIELGVSATGYLRHADGEGVTVLC
SDGREVHADVLIGADGFNSAIRATMTGPERPTDWHYVIWRATPAFRHPKVTPGYVAHYWGRGQRFGLADIGE
GNVYWWGTRNMPAEQAKDWRGGKAGIQRLYAGWADEVQAVIEATPEADISSLPAQDRPFLERWGDGPVTLLG
DAAHPMLTSLGQGAAIAIEDAAVLAHCLATIDDPQAALRAYENRRRDRARAMVETSRALSRIEQLEHPLRTV
ARDLYFRFAPERTFARQNELALTFPGVE*
AnnotationID:1544GeneID:1535
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:29
Gene Name:
Confidence Code:3
GeneProduct:putative FAD-dependent monooxygenase
Cell Localization:()
Synonyms:PA3328
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01360,COG0654
Secondary Functional Category(ies):biosynthesiis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE32275.1| (BX640442) putative monooxygenase [Bordetella bronchiseptica]
          Length = 383

 Score =  155 bits (391), Expect = 5e-37
 Identities = 116/370 (31%), Positives = 166/370 (44%), Gaps = 15/370 (4%)






 
Structural Features:
pfam01360, Monooxygenase, Monooxygenase. 
This family includes diverse enzymes that utilise FAD.
CD-Length = 200 residues, 100.0% aligned
Score =  102 bits (254), Expect = 1e-22
Identities = 51/200 (25%), Positives = 70/200 (35%), Gaps = 5/200 (2%)

COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase 
and related FAD-dependent oxidoreductases 
[Coenzyme metabolism / Energy production and conversion]
CD-Length = 387 residues,  98.7% aligned
Score =  196 bits (499), Expect = 3e-51
Identities = 128/387 (33%), Positives = 163/387 (42%), Gaps = 12/387 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3073




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20219




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1535
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2725
                           PA3328_tr
                           translation of PA3328
                           388
                           99.99
                           99.99
                           0
                           2016.0
     

     
     
85447
                           gb|AAG06716.1|AE004755_3
                           (AE004755) probable FAD-dependent monooxygenase [Pseudomonas aeruginosa PAO1]
                           388
                           99.99
                           99.99
                           0
                           2016.0
     

     






      

          
GC ORFID: 44537How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3328Glimmer Score: 

          
Start: 3144312Stop: 3145478

          
Length: 1167


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3328 translation of PA3328Homolog Bit Score 781.0

          
Other Homologs:  t_PA3328 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAGACATCCCCTGAAGATCGTCATCGCCGGCGCCGGCATCGGCGGGCTCGCCGCGGCCGCCTGCCTG 
AAGGCCGCCGGCTTCGAGGTCGAACTCTACGAGCGGGCCAGGGAGCTGCGCGCGGTCGGCTCGGCGCTGTCG 
CTGATGCCCAACGCGCTGACCGCCCTGGAGAGGGTCGGCGTGCGCCCTGACCTTACCCGCGCCCAGGCCTTC 
GACTCGCTACGGTTCCTCACCCGGCGCGGGCGACCGATCCGCGCCATCGACTTCGGCGGCCTGGCCCGCCAG 
CTCGGCCAGCCGAGCCTGGCGATCCACCGCGCGAGCCTGCAGCAGGCGCTGCTGGAACAGGCCCGCGACTGC 
CGCATCGAACTGGGCGTGAGCGCCACCGGCTACCTGCGCCACGCCGACGGCGAAGGCGTCACCGTGCTCTGC 
AGCGACGGCCGCGAAGTGCACGCCGACGTGCTGATCGGCGCGGACGGCTTCAACTCGGCGATCCGCGCCACC 
ATGACCGGCCCGGAGCGTCCCACCGACTGGCACTACGTGATCTGGCGCGCCACGCCGGCGTTCCGCCATCCG 
AAGGTGACGCCGGGCTACGTCGCCCATTACTGGGGTCGTGGGCAGCGCTTCGGTCTCGCCGACATCGGCGAA 
GGCAACGTCTATTGGTGGGGCACCCGCAACATGCCGGCCGAACAGGCGAAGGACTGGCGCGGCGGCAAGGCG 
GGCATCCAGCGCCTCTACGCCGGCTGGGCCGACGAAGTGCAGGCGGTCATCGAGGCGACCCCGGAGGCCGAC 
ATCAGCAGCCTGCCGGCCCAGGACCGACCGTTCCTCGAGCGCTGGGGCGACGGCCCGGTGACCCTGCTCGGC 
GATGCCGCGCATCCGATGCTGACCAGCCTCGGCCAGGGCGCCGCCATCGCCATCGAAGACGCCGCGGTGCTG 
GCCCACTGCCTGGCCACCATCGACGACCCGCAAGCCGCCCTGCGCGCCTACGAGAACCGCCGTCGCGACCGC 
GCCAGGGCGATGGTCGAGACCTCGCGGGCGCTGAGCCGCATCGAGCAGTTGGAGCATCCGCTGCGCACCGTC 
GCCCGCGATCTCTACTTCCGCTTCGCTCCGGAGCGAACCTTCGCCCGGCAGAACGAACTGGCACTGACCTTC 
CCAGGAGTCGAATGA