ViewGene
Locus Name:
GeneID:
Location:

GeneID:1533
TrivialName: PA14_39850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39850
PAO1 Ortholog Locus:PA1908
Sequence Length:1212
Protein Length:403
Start: 3551857
Stop: 3553068
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05296.1|AE004616_10 (AE004616) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 400/403 (99%), Positives = 400/403 (99%)
Sequence:
ATGACCACCCCGCCGCCCTCCGCCAACACCCTGGACCTGCGTCCGCTGATGTTCGAGACCTTCGTCTGCACC
CTCGCGGTGATGTCCTTCGTCGCCCTGGTCGGCCCGCTCGCCCGCAAGCTCGGCCTGGCGCCCTGGCAGGCC
GGCGCCGCGGTGACCGTCGGCGGCATCGCCTGGATGCTCGCGGCGCGGCCCTGGGGCATCGCCAGCGACCGG
CATGGGCGACGGCGGATACTGCTCGGCGGGCTGGCCGGCTTCGCCCTCTCCTACGCCTCGCTCTGCCTGTTC
ATCGTGCTCGCCTTGCACTGGACGTTGCCGACCCTGCTCGCCTTCGCCGGTATCGTTCTCCTGCGCGGCCTC
GCCGGCGGTTTCTACGCCGCGGTGCCAGCCTGCACGGCGGCACTGGTGGCCGATCACGTCGAGGCGCAACGA
CGCGCCGCGGCGCTGGCCGGACTCGGCGCGGCCAGCGCGATAGGCATGGTGATCGGGCCGGGGCTGGCCGGA
CTGCTGGCGACTCACGGGTTGGTCCTGCCGTTGCTGGTCACCGGCGCGCTGCCCCTGGTCGCCCTGCTGGCG
CTCTGGCGCTGGCTGCCGCGCGAGGAGCGTCGCCAGCCGAACCGCGGCGCCGCCCTGGCGATCGGCGACCGC
CGCCTGCGGCGGCCGCTGGCGGTGGGCTTCGTGGCGATGTTCAGCGTCACCGTGGCGCAGATCACCGTGGGC
TTCTTCGCCCTCGACCGGCTGCGCCTGGATTCCGCCGACGCCGCGCGGGTGGCCGGCATCGCCCTGACCGCC
GTGGGCGTCGCGCTGATCCTGGCCCAGCTCCTGGTGCGCCGCCTGGACTGGCCACCGCCGCGACTGATCCGG
GTCGGCGGGCTGGTCGCCGCCATCGGTTTCGCCGCCGTGTGCTTCGCCGACTCGCCGCCGCTGCTCTGGCTG
GCCTTCTTCGTCGCCGCGGCGGGCATGGGTTGGGTGTTCCCGGCAGTCTCGGCGCTCAACGCCAATGCCGTG
CGCGCCGAGGAACAGGGTGCCGCCGCCGGCACCCTGGTGGCCGTACATGGCTTCGGCCTGATCAGCGGGCCG
CTGCTCGGCGCGCTGCTCCACCAATTGGACAGCCGCGCCCCCTACGCGCTGGTCGGTCTGCTGCTGGCGCTG
GCGGCGTTCTGGCCGAGCCAACCGACGCGCCCCGTGGAAACGAGGAGCGAAGCACCATGA
Translation:
MTTPPPSANTLDLRPLMFETFVCTLAVMSFVALVGPLARKLGLAPWQAGAAVTVGGIAWMLAARPWGIASDR
HGRRRILLGGLAGFALSYASLCLFIVLALHWTLPTLLAFAGIVLLRGLAGGFYAAVPACTAALVADHVEAQR
RAAALAGLGAASAIGMVIGPGLAGLLATHGLVLPLLVTGALPLVALLALWRWLPREERRQPNRGAALAIGDR
RLRRPLAVGFVAMFSVTVAQITVGFFALDRLRLDSADAARVAGIALTAVGVALILAQLLVRRLDWPPPRLIR
VGGLVAAIGFAAVCFADSPPLLWLAFFVAAAGMGWVFPAVSALNANAVRAEEQGAAAGTLVAVHGFGLISGP
LLGALLHQLDSRAPYALVGLLLALAAFWPSQPTRPVETRSEAP*
AnnotationID:1542GeneID:1533
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 09:09:36
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA1908
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative permease
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68493.1|AE016481_9 (AE016784) transporter, putative [Pseudomonas putida KT2440]
          Length = 409

 Score =  422 bits (1085), Expect = e-117
 Identities = 215/382 (56%), Positives = 273/382 (71%)








 
Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  99.5% aligned
Score = 74.5 bits (183), Expect = 2e-14
Identities = 101/404 (25%), Positives = 147/404 (36%), Gaps = 14/404 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3069




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20215




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37040




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1533_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1533
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2723
                           PA1908_tr
                           translation of PA1908
                           403
                           99.25
                           99.25
                           0
                           2018.0
     

     
     
85443
                           gb|AAG05296.1|AE004616_10
                           (AE004616) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           403
                           99.25
                           99.25
                           0
                           2018.0
     

     
     
85444
                           gb|AAN68493.1|AE016481_9
                           (AE016784) transporter, putative [Pseudomonas putida KT2440]
                           423
                           52.71
                           65.72
                           34
                           1081.0
     

     
     
85445
                           emb|CAE10346.1|
                           (BX571660) PUTATIVE MFS TRANSPORTER [Wolinella succinogenes]
                           409
                           38.38
                           56.23
                           15
                           739.0
     

     






      

          
GC ORFID: 44535How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1908Glimmer Score: 

          
Start: 1402054Stop: 1400843

          
Length: 1212


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1908 translation of PA1908Homolog Bit Score 781.0

          
Other Homologs:  t_PA1908 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACCCCGCCGCCCTCCGCCAACACCCTGGACCTGCGTCCGCTGATGTTCGAGACCTTCGTCTGCACC 
CTCGCGGTGATGTCCTTCGTCGCCCTGGTCGGCCCGCTCGCCCGCAAGCTCGGCCTGGCGCCCTGGCAGGCC 
GGCGCCGCGGTGACCGTCGGCGGCATCGCCTGGATGCTCGCGGCGCGGCCCTGGGGCATCGCCAGCGACCGG 
CATGGGCGACGGCGGATACTGCTCGGCGGGCTGGCCGGCTTCGCCCTCTCCTACGCCTCGCTCTGCCTGTTC 
ATCGTGCTCGCCTTGCACTGGACGTTGCCGACCCTGCTCGCCTTCGCCGGTATCGTTCTCCTGCGCGGCCTC 
GCCGGCGGTTTCTACGCCGCGGTGCCAGCCTGCACGGCGGCACTGGTGGCCGATCACGTCGAGGCGCAACGA 
CGCGCCGCGGCGCTGGCCGGACTCGGCGCGGCCAGCGCGATAGGCATGGTGATCGGGCCGGGGCTGGCCGGA 
CTGCTGGCGACTCACGGGTTGGTCCTGCCGTTGCTGGTCACCGGCGCGCTGCCCCTGGTCGCCCTGCTGGCG 
CTCTGGCGCTGGCTGCCGCGCGAGGAGCGTCGCCAGCCGAACCGCGGCGCCGCCCTGGCGATCGGCGACCGC 
CGCCTGCGGCGGCCGCTGGCGGTGGGCTTCGTGGCGATGTTCAGCGTCACCGTGGCGCAGATCACCGTGGGC 
TTCTTCGCCCTCGACCGGCTGCGCCTGGATTCCGCCGACGCCGCGCGGGTGGCCGGCATCGCCCTGACCGCC 
GTGGGCGTCGCGCTGATCCTGGCCCAGCTCCTGGTGCGCCGCCTGGACTGGCCACCGCCGCGACTGATCCGG 
GTCGGCGGGCTGGTCGCCGCCATCGGTTTCGCCGCCGTGTGCTTCGCCGACTCGCCGCCGCTGCTCTGGCTG 
GCCTTCTTCGTCGCCGCGGCGGGCATGGGTTGGGTGTTCCCGGCAGTCTCGGCGCTCAACGCCAATGCCGTG 
CGCGCCGAGGAACAGGGTGCCGCCGCCGGCACCCTGGTGGCCGTACATGGCTTCGGCCTGATCAGCGGGCCG 
CTGCTCGGCGCGCTGCTCCACCAATTGGACAGCCGCGCCCCCTACGCGCTGGTCGGTCTGCTGCTGGCGCTG 
GCGGCGTTCTGGCCGAGCCAACCGACGCGCCCCGTGGAAACGAGGAGCGAAGCACCATGA