ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1532

TrivialName: PA14_40010

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_40010

PAO1 Ortholog Locus: PA1896

Sequence Length: 1170

Protein Length: 389

Start: 3564462

Stop: 3565631

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05285.1|AE004615_8 (AE004615) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 388/389 (99%), Positives = 389/389 (100%)

Sequence:

ATGATTCCAGACATCGATTCCCGTCTCAGCCGGAACATATTGAAATCCATCTCGTATGGCCTCCCCCTCGCC
GAAGTGGTCCCCGACCATACCTATGCGCAACTGGAAACGCGCCTCGGCGAACTGAAACGCAGGTATCTGGAG
CTGCGCATCTCCCACGGCGCGCGCGAGCTGCCGTTCAGCAACTACCTGTTCTACCTGATCCTCCAGTCGCGC
CACCAGGAATTCGACTTCAAGCTGCGCCAGGGCAACTCGGTGGTCACCAACATCCACCGCTTCAAGAGCAAG
GGACGCATCCCGTCCCTGACCACCCTGCTCCTGGCCGATGCGGTCAACGCCAAGAGCGAGCTGGAACTCAAG
CATCCGGACATCCCGCAGCTCGACCGCCACGCCCGCGACATCGAGCGCTGGCTGGCCGCCGGCAACGTCATG
CCGCCCAGCGAGCGGGCCCTGCGCGGCCTGGTGGAGGCGCTGGAGCGCGCCGCTGGCGAAGGCCGTCCGTTG
CACCTGGTGAGCGCGGTATGCCCGGACTACTCGCACTCCAGCGATGCCGAGGGCAAGCCGCGCTACACCTTC
GAGCGAGTCGGCGACCAGCCCGGTCTGGCCGGCGCCAAGCTGGTCAGCGCCGGCCAGGCGGTGGCGGAGCTG
GCCAGGGCGCGCCAGGTGGAAATCCGCCACGCGATCCTCGGCGGCGAGTTCGAATACCTGTCGTTCAACCGC
AACCCCGCCACTGGCGAGACCCGCGAGGGTTTCCTCGGCAAGGTCGAGCGCCAGCTCGAGCGGATCGCCGGG
GCCCTGCCCTGCCCGGCCGCGACCTGCTCGTTCTTCGAGATGTGCGGCGGCGAGGACGGCTGGCACCGGGCC
CACGGCGAGATCGTCCAGCGCCTGGAACAGGGCGACTACGGCCAGACCGGGCTGGACTACCCGGCCCTGGAA
TCGATCTTCCTGTCGCGCCTGCCGCTCTACGAGAAATGGTTCGCCAGCCAGTCGCGCGAGCAGATCTGGGCC
AGCTTCGTCTCCCAGGCCGCCGAGTACGCATTGATGGGAAAACTCTTCGGCGAGCGCTTCGACAACTTCGTC
GTGCTGGCCGTCGATCACTACCGGATGGAGCCGTTCTACTCGTTCTTCGCGACCGTCCCGACGCTCTACATC
CGAACCGACTACCTGTAA

Translation:

MIPDIDSRLSRNILKSISYGLPLAEVVPDHTYAQLETRLGELKRRYLELRISHGARELPFSNYLFYLILQSR
HQEFDFKLRQGNSVVTNIHRFKSKGRIPSLTTLLLADAVNAKSELELKHPDIPQLDRHARDIERWLAAGNVM
PPSERALRGLVEALERAAGEGRPLHLVSAVCPDYSHSSDAEGKPRYTFERVGDQPGLAGAKLVSAGQAVAEL
ARARQVEIRHAILGGEFEYLSFNRNPATGETREGFLGKVERQLERIAGALPCPAATCSFFEMCGGEDGWHRA
HGEIVQRLEQGDYGQTGLDYPALESIFLSRLPLYEKWFASQSREQIWASFVSQAAEYALMGKLFGERFDNFV
VLAVDHYRMEPFYSFFATVPTLYIRTDYL*

AnnotationID:1541 GeneID:1532

AnnotatorUID: diggins

Modification Date/Time: 2005-03-02 09:09:24

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA1896

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:3067

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20213

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1532

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2722 PA1896_tr translation of PA1896 389 99.74 99.99 0 2018.0

85442 gb|AAG05285.1|AE004615_8 (AE004615) hypothetical protein PA1896 [Pseudomonas aeruginosa PAO1] 389 99.74 99.99 0 2018.0

GC ORFID: `44534`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1896`	Glimmer Score:
Start: `1389448`	Stop: `1388279`
Length: `1170`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA1896 translation of PA1896`	Homolog Bit Score `781.0`
Other Homologs: `t_PA1896 (ORF: GLIMMER)`
GC ORF Sequence
ATGATTCCAGACATCGATTCCCGTCTCAGCCGGAACATATTGAAATCCATCTCGTATGGCCTCCCCCTCGCC GAAGTGGTCCCCGACCATACCTATGCGCAACTGGAAACGCGCCTCGGCGAACTGAAACGCAGGTATCTGGAG CTGCGCATCTCCCACGGCGCGCGCGAGCTGCCGTTCAGCAACTACCTGTTCTACCTGATCCTCCAGTCGCGC CACCAGGAATTCGACTTCAAGCTGCGCCAGGGCAACTCGGTGGTCACCAACATCCACCGCTTCAAGAGCAAG GGACGCATCCCGTCCCTGACCACCCTGCTCCTGGCCGATGCGGTCAACGCCAAGAGCGAGCTGGAACTCAAG CATCCGGACATCCCGCAGCTCGACCGCCACGCCCGCGACATCGAGCGCTGGCTGGCCGCCGGCAACGTCATG CCGCCCAGCGAGCGGGCCCTGCGCGGCCTGGTGGAGGCGCTGGAGCGCGCCGCTGGCGAAGGCCGTCCGTTG CACCTGGTGAGCGCGGTATGCCCGGACTACTCGCACTCCAGCGATGCCGAGGGCAAGCCGCGCTACACCTTC GAGCGAGTCGGCGACCAGCCCGGTCTGGCCGGCGCCAAGCTGGTCAGCGCCGGCCAGGCGGTGGCGGAGCTG GCCAGGGCGCGCCAGGTGGAAATCCGCCACGCGATCCTCGGCGGCGAGTTCGAATACCTGTCGTTCAACCGC AACCCCGCCACTGGCGAGACCCGCGAGGGTTTCCTCGGCAAGGTCGAGCGCCAGCTCGAGCGGATCGCCGGG GCCCTGCCCTGCCCGGCCGCGACCTGCTCGTTCTTCGAGATGTGCGGCGGCGAGGACGGCTGGCACCGGGCC CACGGCGAGATCGTCCAGCGCCTGGAACAGGGCGACTACGGCCAGACCGGGCTGGACTACCCGGCCCTGGAA TCGATCTTCCTGTCGCGCCTGCCGCTCTACGAGAAATGGTTCGCCAGCCAGTCGCGCGAGCAGATCTGGGCC AGCTTCGTCTCCCAGGCCGCCGAGTACGCATTGATGGGAAAACTCTTCGGCGAGCGCTTCGACAACTTCGTC GTGCTGGCCGTCGATCACTACCGGATGGAGCCGTTCTACTCGTTCTTCGCGACCGTCCCGACGCTCTACATC CGAACCGACTACCTGTAA