ViewGene
Locus Name:
GeneID:
Location:

GeneID:1531
TrivialName: PA14_45280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45280
PAO1 Ortholog Locus:PA1483
Sequence Length:1224
Protein Length:407
Start: 4036747
Stop: 4035524
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04872.1|AE004577_7 (AE004577) cytochrome c-type biogenesis protein [Pseudomonas aeruginosa PAO1]
Identities = 404/407 (99%), Positives = 407/407 (100%)
Sequence:
ATGATCGATTTCTGGCTCGCTGCCGGCCTGCTGCTGCTGGCGGCCCTGGCATTCCTGCTGATTCCGCTGCTG
CGTGGCCGTCGCGCCCAGGCCGAGGAAGACCGTACCGCCCTGAACGTCGCGCTTTATCAGGAGCGGATCGCC
GAGCTGGCCGGCCAGCAGGCCGCCGGCACGCTGACCGCCGAGCAACTGGAGAATGGCCGCGCCGAGGCTGCC
CGCGAACTGCTCGCCGACACCGAGGGCAGCGGCGAGGAGCGTAGCTCGCGCCTGGGCCGGGCGATCCCGCTG
GTCGCGGCGCTGCTGGTGCCGTTGGTCGCGCTCGGCCTGTACCTGCATTGGGGCGCCAGCGACAAGGTCGAG
CTGGCCCGCGAATTCGCCCAGGCACCGCACTCCATGGAAGAGATGACCGCGCGCCTGGAGCGCGCGGTACAG
GCCCAGCCGGATTCCGCCCAGGGCTGGTACTTCCTCGGTCGCACCTACATGACCCAGGAACGCGGCGCCGAT
GCGGCGCGGGCCTTCGAACGCTCCGCCGAACTCAGCGGGCGGCAGCCGGAACTGCTCGGCCAGTGGGCGCAG
GCACTGTATTTCTCCGGTGGCAAGAAAATGACCGCGCAGATCAAGGCCTTGGCCGACGAGGCGCTGAAGGGC
GACCCGGCCGAAGTGACCACCCTTGGCCTGCTCGGCATCGCCGCCTTCGAAGAGCAGCGCTACGCCGACGCC
ATCGGCTTCTGGGAGCGCCTGGTGTCGGTGTTGCCGAACGAGGACCCGGCACGCTCGGCGATCCAGGGCGGC
ATCCAGCGCGCCCGCGAGCGCATGACCGAGGCCGGGCAGACCCCGCCGGCGCCGGCCGCGCCCGCTGCCGCC
GGGGTGACCCTGACGGTGAAGGTGGATATCAGCGACGCGGTGAAGGGCCAGGTCAAGGCCGACGACAGCGTG
TTCGTCTTCGCCCGCGCCGTCGGCGGCCCGCCGATGCCGTTGGCAGTGAAGCGCCTGACCGTCGCCGACCTG
CCGGCCGAGGTCAGCCTGAGCGATGCCGACGCCATGATGCCGCAGCTCAAGCTCAGCGGATTCCCGCAGGTC
GAGCTGGTCGCGCGGGTATCCCGCGCCGGCAACGCCATCTCCGGCGAATGGATCGGACGCGGCAAACCGTTG
TCTACCGCCCAGTCGTCGGCGCAAGCGCTGACCATCGACGGCCCGGACCAGCCCCAGGCGGCCCGGCCATAA
Translation:
MIDFWLAAGLLLLAALAFLLIPLLRGRRAQAEEDRTALNVALYQERIAELAGQQAAGTLTAEQLENGRAEAA
RELLADTEGSGEERSSRLGRAIPLVAALLVPLVALGLYLHWGASDKVELAREFAQAPHSMEEMTARLERAVQ
AQPDSAQGWYFLGRTYMTQERGADAARAFERSAELSGRQPELLGQWAQALYFSGGKKMTAQIKALADEALKG
DPAEVTTLGLLGIAAFEEQRYADAIGFWERLVSVLPNEDPARSAIQGGIQRARERMTEAGQTPPAPAAPAAA
GVTLTVKVDISDAVKGQVKADDSVFVFARAVGGPPMPLAVKRLTVADLPAEVSLSDADAMMPQLKLSGFPQV
ELVARVSRAGNAISGEWIGRGKPLSTAQSSAQALTIDGPDQPQAARP*
AnnotationID:1540GeneID:1531
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 17:05:08
Gene Name:cycH
Confidence Code:2
GeneProduct:cytochrome c-type biogenesis protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4235
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC44229.1| (U44827) CycH [Pseudomonas fluorescens]
          Length = 327

 Score =  380 bits (976), Expect = e-105
 Identities = 199/312 (63%), Positives = 239/312 (76%), Gaps = 7/312 (2%)

>emb|CAA88021.1| (Z47979) periplasmic or inner membrane associated protein
           [Pseudomonas fluorescens]
          Length = 296

 Score =  308 bits (788), Expect = 5e-83
 Identities = 160/232 (68%), Positives = 186/232 (80%)






 
Structural Features:
COG4235, COG4235, Cytochrome c biogenesis factor 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 287 residues, 100.0% aligned
Score =  211 bits (539), Expect = 1e-55
Identities = 117/289 (40%), Positives = 160/289 (55%), Gaps = 11/289 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3065




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20211




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37348




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1531_cdd.html


    		




 
URL:

















    ReferenceID:37947




  
Author/Investigator(s):
        Fabianek RA, Hofer T, Thony-Meyer L.





  
Title:
        Characterization of the Escherichia coli CcmH protein reveals new insights into the redox pathway required for cytochrome c maturation.




  
PubMed:
        9914305


MedLine:
        




    
Source:
Arch Microbiol. 1999 Jan;171(2):92-100.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9914305

















    ReferenceID:37948




  
Author/Investigator(s):
        Page MD, Ferguson SJ.





  
Title:
        Cloning and sequence analysis of cycH gene from Paracoccus denitrificans: the cycH gene product is required for assembly of all c-type cytochromes, including cytochrome c1.




  
PubMed:
        7746152


MedLine:
        




    
Source:
Mol Microbiol. 1995 Jan;15(2):307-18.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7746152









           
Homologs By Global Alignment 

           

       



     
Gene ID:1531
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2721
                           PA1483_tr
                           translation of PA1483
                           407
                           99.26
                           99.99
                           0
                           2017.0
     

     
     
85439
                           gb|AAG04872.1|AE004577_7
                           (AE004577) cytochrome c-type biogenesis protein [Pseudomonas aeruginosa PAO1]
                           407
                           99.26
                           99.99
                           0
                           2017.0
     

     
     
85440
                           gb|AAC44229.1|
                           (U44827) CycH [Pseudomonas fluorescens]
                           415
                           49.39
                           59.27
                           96
                           972.0
     

     
     
85441
                           emb|CAA88021.1|
                           (Z47979) periplasmic or inner membrane associated protein [Pseudomonas fluorescens]
                           431
                           40.13
                           47.33
                           159
                           780.0
     

     






      

          
GC ORFID: 44533How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1483Glimmer Score: 

          
Start: 917162Stop: 918385

          
Length: 1224


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1483 translation of PA1483Homolog Bit Score 781.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2233 (ORF: BLASTX 493.0), t_PA1483 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGATTTCTGGCTCGCTGCCGGCCTGCTGCTGCTGGCGGCCCTGGCATTCCTGCTGATTCCGCTGCTG 
CGTGGCCGTCGCGCCCAGGCCGAGGAAGACCGTACCGCCCTGAACGTCGCGCTTTATCAGGAGCGGATCGCC 
GAGCTGGCCGGCCAGCAGGCCGCCGGCACGCTGACCGCCGAGCAACTGGAGAATGGCCGCGCCGAGGCTGCC 
CGCGAACTGCTCGCCGACACCGAGGGCAGCGGCGAGGAGCGTAGCTCGCGCCTGGGCCGGGCGATCCCGCTG 
GTCGCGGCGCTGCTGGTGCCGTTGGTCGCGCTCGGCCTGTACCTGCATTGGGGCGCCAGCGACAAGGTCGAG 
CTGGCCCGCGAATTCGCCCAGGCACCGCACTCCATGGAAGAGATGACCGCGCGCCTGGAGCGCGCGGTACAG 
GCCCAGCCGGATTCCGCCCAGGGCTGGTACTTCCTCGGTCGCACCTACATGACCCAGGAACGCGGCGCCGAT 
GCGGCGCGGGCCTTCGAACGCTCCGCCGAACTCAGCGGGCGGCAGCCGGAACTGCTCGGCCAGTGGGCGCAG 
GCACTGTATTTCTCCGGTGGCAAGAAAATGACCGCGCAGATCAAGGCCTTGGCCGACGAGGCGCTGAAGGGC 
GACCCGGCCGAAGTGACCACCCTTGGCCTGCTCGGCATCGCCGCCTTCGAAGAGCAGCGCTACGCCGACGCC 
ATCGGCTTCTGGGAGCGCCTGGTGTCGGTGTTGCCGAACGAGGACCCGGCACGCTCGGCGATCCAGGGCGGC 
ATCCAGCGCGCCCGCGAGCGCATGACCGAGGCCGGGCAGACCCCGCCGGCGCCGGCCGCGCCCGCTGCCGCC 
GGGGTGACCCTGACGGTGAAGGTGGATATCAGCGACGCGGTGAAGGGCCAGGTCAAGGCCGACGACAGCGTG 
TTCGTCTTCGCCCGCGCCGTCGGCGGCCCGCCGATGCCGTTGGCAGTGAAGCGCCTGACCGTCGCCGACCTG 
CCGGCCGAGGTCAGCCTGAGCGATGCCGACGCCATGATGCCGCAGCTCAAGCTCAGCGGATTCCCGCAGGTC 
GAGCTGGTCGCGCGGGTATCCCGCGCCGGCAACGCCATCTCCGGCGAATGGATCGGACGCGGCAAACCGTTG 
TCTACCGCCCAGTCGTCGGCGCAAGCGCTGACCATCGACGGCCCGGACCAGCCCCAGGCGGCCCGGCCATAA