ViewGene
Locus Name:
GeneID:
Location:

GeneID:153
TrivialName: PA14_32740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32740
PAO1 Ortholog Locus:PA2466
Sequence Length:2463
Protein Length:820
Start: 2842146
Stop: 2844608
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05854.1|AE004674_4 (AE004674) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
Identities = 819/820 (99%), Positives = 820/820 (100%)
Sequence:
ATGACCGCCACCGCCGTCGTCCTCCGCAATGCCCCGTCGTCCCTCGATTTCCCCCGCGCCTCGCGCCTGAGC
CGTTCGGTGCGCGCGGCCCTGCTGTCGCTGGCCATGGCGGCCGGCGCGGCGCCGCTCTGCGCCTCGGCCGCC
GAAGCGGCGGCGGAACAGGCGCGGCCCTATGCGATCCCCGCCGGACAGTTGGGTGACGTGCTCAACCGCTTC
GCCCGCGAAGCCGGCATCACCCTCTCGGCCACTCCGGCGCAGACCGGTGGCTACAGCTCCCAGGGGTTGCGC
GGCAGTTTCACCGTGCAGCAGGGCCTGGCCCGGCTGCTCGCCGACACCCCGCTGGAAGCGGAAGACCAGGGC
GACGGCAGCTTCGTCTTGCGCGAGGCGCCGGCAAAGGACGGCGACGTGCTGAACATGCAGGCGGTGGAAGTC
TTCGCCCTCGGCAACAACCTGGGCAGCACCGATGGCTACCTGGCCACCCATAGCCAGATCGCCACCAAGACC
AGCAAGCCGCTGCTGGAAACCAGCCAGACCGTCTCGGTGATCACCCGCGAGCAGATCGACGACACCGCCTCC
AAGACCGTGCAGCAGGCGATGCGCTATACCCCCGGCATCTTCACCGGCCAGGTCGGCGCCTCCAACCGCTAC
GACTACGTGGTGATGCGCGGCTTCGCCGACAACAGCGTGGACAACATCTACCTCGACGGCCTCAAGGCCATG
GGCGACAGCGGTACCTTCAGCTCGATGCAGGTCGACCCGTACTTCCTCGAACGCATCGATGTGCTCAAGGGC
CCGTCCTCGGTGCTCTACGGCCGTAGCCTGCCGGGCGGCCTGGTGGCGCTGACCAGCAAGAAGCCGTTGTAC
GAGGACTACCGCCAGATCACCGGCAGCATCGGCAACATGGGCCAGAAGGAGATGGGCTTCGATTTCAGCGGG
CCGCTCGACGAGGAGAAGCGCATCGCCTACCGCCTGGTCGGTCTCGGCAAGGGCTCGGACACCCAGTTCGAT
CACGTCAAGGAGGAGCGCTACGCCATCGCCCCGACCCTGGCCATCGACTTCAGCGATGACACCACCCTGACC
CTGCAAGGCTACCTGCAACACGATCCCAACGGGGGCTACCACGGCGGCGTACCGGCCGACGGCACCCTGTCG
CACCACAACGGCCGGCACATCTCCCGCGAGTTCTTCGATGGCGAGCCGAGCAAGGACGACTTCGACCGCACC
CAGCGGATGTTCGGCTACCAGCTGGAGCACCGCATCGACGACGTCTGGTCGGCGCGGCAGAACTTCCGCTAC
CTGGACTCCGACGTCGACTTGTCGCAGGTCTACGCCTACGGCTGGAGCGCCAGCGAGCCGAACAAGCTGAAC
CGCTACTTCAGCGGCGCCCGCGAGCACCTGCAGGCGTATATCGTCGACAACATGCTGCAGGCCGAATTCGCC
ACCGGCGCGGCGCGCCACACCCTGCTCACCGGCCTCGACTATCAGCGCCGGCGCACCGTGGTCGACTGGCGT
TCCGGCTCGGCCTCGGCGCTGGACGCGTTCAACCCGGTCTACGGCGACGACGCCATCAGCTATTTCCCGGAC
GACAACCACACCCGCCGCCTGGAGCAGACCGGCGTCTACCTCCAGGACCTGATCGACATCGACCAGTGGCGC
TTCTCGCTCGGCCTGCGCCAGGACTGGGTCAGCGTCACCGACAAGAACCGCAGCACCGGCAGCAAGGCCGAC
GACGACTGGGAGAAATTCACCGGGCGGATCGGCGCGCTGTACCTGTTCGACAACGGCCTGGCGCCCTACGTC
AGCTACTCCGAGTCGTTCAACCCGAACGCCTATTCCGACGCCTCCGGCACGCCCCTGGCGCCCACCGAGGGC
AAGCAGTGGGAACTCGGCCTGAAGTTCCAGGCGCCGGGCAGCAACAGCTTCTACACCGCCTCGCTGTTCCAT
ATCACCCAGGAAAACGTCGCCTCCAAGGAGCCCCAGGACAACTTCTACACCTCGGTCGGCGAAGTGCGCTCC
CAGGGGCTCGAACTGGAGGCCCATACCCAGCTCAGCGACAACCTGAAGCTGCTCGGCAGCTACACCTACACC
GACATCACCTACACCAAGTCGCTGGACGGCAACCAGGGCCATACGCCGAACCAGGCGCCCAAGCACATGGCA
TCGCTGTGGGCCGACTATGCCTTCGACGCCGGCCCGCTCAGCGGTCTGAGCATCGGCGGCGGCGCGCGCTAC
GTCGGCGAGACCTGGGCGGACAAGGAAAACACCTTGCGGGTGCCGGACTACACCCTGGTCGACGCGCGGATC
GGCTACGACCTCGGCAAGCTCGGCCTGAAAGGCCTGGACGTCAGCCTCAATGCCAACAACCTGCTGGACAAG
GACTACGTGGCGTCCTGCTACAGCCTGGACTTCTGCTACTTCGGCGAGAAGCGCAACGTCACCGCGACGGTG
AACTACCAGTTCTGA
Translation:
MTATAVVLRNAPSSLDFPRASRLSRSVRAALLSLAMAAGAAPLCASAAEAAAEQARPYAIPAGQLGDVLNRF
AREAGITLSATPAQTGGYSSQGLRGSFTVQQGLARLLADTPLEAEDQGDGSFVLREAPAKDGDVLNMQAVEV
FALGNNLGSTDGYLATHSQIATKTSKPLLETSQTVSVITREQIDDTASKTVQQAMRYTPGIFTGQVGASNRY
DYVVMRGFADNSVDNIYLDGLKAMGDSGTFSSMQVDPYFLERIDVLKGPSSVLYGRSLPGGLVALTSKKPLY
EDYRQITGSIGNMGQKEMGFDFSGPLDEEKRIAYRLVGLGKGSDTQFDHVKEERYAIAPTLAIDFSDDTTLT
LQGYLQHDPNGGYHGGVPADGTLSHHNGRHISREFFDGEPSKDDFDRTQRMFGYQLEHRIDDVWSARQNFRY
LDSDVDLSQVYAYGWSASEPNKLNRYFSGAREHLQAYIVDNMLQAEFATGAARHTLLTGLDYQRRRTVVDWR
SGSASALDAFNPVYGDDAISYFPDDNHTRRLEQTGVYLQDLIDIDQWRFSLGLRQDWVSVTDKNRSTGSKAD
DDWEKFTGRIGALYLFDNGLAPYVSYSESFNPNAYSDASGTPLAPTEGKQWELGLKFQAPGSNSFYTASLFH
ITQENVASKEPQDNFYTSVGEVRSQGLELEAHTQLSDNLKLLGSYTYTDITYTKSLDGNQGHTPNQAPKHMA
SLWADYAFDAGPLSGLSIGGGARYVGETWADKENTLRVPDYTLVDARIGYDLGKLGLKGLDVSLNANNLLDK
DYVASCYSLDFCYFGEKRNVTATVNYQF*
AnnotationID:163GeneID:153
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 17:05:26
Gene Name:
Confidence Code:3
GeneProduct:probable TonB-dependent receptor
Cell Localization:(6) Outer membrane protein
Synonyms:PA2466, optS
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:309




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17451




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:153
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
279
                           PA2466_tr
                           translation of PA2466
                           820
                           99.87
                           99.99
                           0
                           4273.0
     

     
     
18252
                           gb|AAG05854.1|AE004674_4
                           (AE004674) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
                           820
                           99.87
                           99.99
                           0
                           4273.0
     

     
     
18253
                           gb|AAN65793.1|AE016206_1
                           (AE016774) ferrioxamine receptor, putative [Pseudomonas putida KT2440]
                           830
                           60.24
                           75.42
                           12
                           2658.0
     

     
     
18260
                           emb|CAE38491.1|
                           (BX640432) putative ferric siderophore receptor [Bordetella parapertussis]
                           853
                           40.44
                           56.27
                           61
                           1507.0
     

     
     
18259
                           emb|CAE41435.1|
                           (BX640414) putative ferric siderophore receptor [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           853
                           40.32
                           56.27
                           61
                           1508.0
     

     






      

          
GC ORFID: 43155How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2466Glimmer Score: 

          
Start: 2111778Stop: 2109316

          
Length: 2463


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2466 translation of PA2466Homolog Bit Score 1650.0

          
Other Homologs:  t_PA2466 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCCACCGCCGTCGTCCTCCGCAATGCCCCGTCGTCCCTCGATTTCCCCCGCGCCTCGCGCCTGAGC 
CGTTCGGTGCGCGCGGCCCTGCTGTCGCTGGCCATGGCGGCCGGCGCGGCGCCGCTCTGCGCCTCGGCCGCC 
GAAGCGGCGGCGGAACAGGCGCGGCCCTATGCGATCCCCGCCGGACAGTTGGGTGACGTGCTCAACCGCTTC 
GCCCGCGAAGCCGGCATCACCCTCTCGGCCACTCCGGCGCAGACCGGTGGCTACAGCTCCCAGGGGTTGCGC 
GGCAGTTTCACCGTGCAGCAGGGCCTGGCCCGGCTGCTCGCCGACACCCCGCTGGAAGCGGAAGACCAGGGC 
GACGGCAGCTTCGTCTTGCGCGAGGCGCCGGCAAAGGACGGCGACGTGCTGAACATGCAGGCGGTGGAAGTC 
TTCGCCCTCGGCAACAACCTGGGCAGCACCGATGGCTACCTGGCCACCCATAGCCAGATCGCCACCAAGACC 
AGCAAGCCGCTGCTGGAAACCAGCCAGACCGTCTCGGTGATCACCCGCGAGCAGATCGACGACACCGCCTCC 
AAGACCGTGCAGCAGGCGATGCGCTATACCCCCGGCATCTTCACCGGCCAGGTCGGCGCCTCCAACCGCTAC 
GACTACGTGGTGATGCGCGGCTTCGCCGACAACAGCGTGGACAACATCTACCTCGACGGCCTCAAGGCCATG 
GGCGACAGCGGTACCTTCAGCTCGATGCAGGTCGACCCGTACTTCCTCGAACGCATCGATGTGCTCAAGGGC 
CCGTCCTCGGTGCTCTACGGCCGTAGCCTGCCGGGCGGCCTGGTGGCGCTGACCAGCAAGAAGCCGTTGTAC 
GAGGACTACCGCCAGATCACCGGCAGCATCGGCAACATGGGCCAGAAGGAGATGGGCTTCGATTTCAGCGGG 
CCGCTCGACGAGGAGAAGCGCATCGCCTACCGCCTGGTCGGTCTCGGCAAGGGCTCGGACACCCAGTTCGAT 
CACGTCAAGGAGGAGCGCTACGCCATCGCCCCGACCCTGGCCATCGACTTCAGCGATGACACCACCCTGACC 
CTGCAAGGCTACCTGCAACACGATCCCAACGGGGGCTACCACGGCGGCGTACCGGCCGACGGCACCCTGTCG 
CACCACAACGGCCGGCACATCTCCCGCGAGTTCTTCGATGGCGAGCCGAGCAAGGACGACTTCGACCGCACC 
CAGCGGATGTTCGGCTACCAGCTGGAGCACCGCATCGACGACGTCTGGTCGGCGCGGCAGAACTTCCGCTAC 
CTGGACTCCGACGTCGACTTGTCGCAGGTCTACGCCTACGGCTGGAGCGCCAGCGAGCCGAACAAGCTGAAC 
CGCTACTTCAGCGGCGCCCGCGAGCACCTGCAGGCGTATATCGTCGACAACATGCTGCAGGCCGAATTCGCC 
ACCGGCGCGGCGCGCCACACCCTGCTCACCGGCCTCGACTATCAGCGCCGGCGCACCGTGGTCGACTGGCGT 
TCCGGCTCGGCCTCGGCGCTGGACGCGTTCAACCCGGTCTACGGCGACGACGCCATCAGCTATTTCCCGGAC 
GACAACCACACCCGCCGCCTGGAGCAGACCGGCGTCTACCTCCAGGACCTGATCGACATCGACCAGTGGCGC 
TTCTCGCTCGGCCTGCGCCAGGACTGGGTCAGCGTCACCGACAAGAACCGCAGCACCGGCAGCAAGGCCGAC 
GACGACTGGGAGAAATTCACCGGGCGGATCGGCGCGCTGTACCTGTTCGACAACGGCCTGGCGCCCTACGTC 
AGCTACTCCGAGTCGTTCAACCCGAACGCCTATTCCGACGCCTCCGGCACGCCCCTGGCGCCCACCGAGGGC 
AAGCAGTGGGAACTCGGCCTGAAGTTCCAGGCGCCGGGCAGCAACAGCTTCTACACCGCCTCGCTGTTCCAT 
ATCACCCAGGAAAACGTCGCCTCCAAGGAGCCCCAGGACAACTTCTACACCTCGGTCGGCGAAGTGCGCTCC 
CAGGGGCTCGAACTGGAGGCCCATACCCAGCTCAGCGACAACCTGAAGCTGCTCGGCAGCTACACCTACACC 
GACATCACCTACACCAAGTCGCTGGACGGCAACCAGGGCCATACGCCGAACCAGGCGCCCAAGCACATGGCA 
TCGCTGTGGGCCGACTATGCCTTCGACGCCGGCCCGCTCAGCGGTCTGAGCATCGGCGGCGGCGCGCGCTAC 
GTCGGCGAGACCTGGGCGGACAAGGAAAACACCTTGCGGGTGCCGGACTACACCCTGGTCGACGCGCGGATC 
GGCTACGACCTCGGCAAGCTCGGCCTGAAAGGCCTGGACGTCAGCCTCAATGCCAACAACCTGCTGGACAAG 
GACTACGTGGCGTCCTGCTACAGCCTGGACTTCTGCTACTTCGGCGAGAAGCGCAACGTCACCGCGACGGTG 
AACTACCAGTTCTGA