ViewGene
Locus Name:
GeneID:
Location:

GeneID:1529
TrivialName: PA14_16310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16310
PAO1 Ortholog Locus:PA3718
Sequence Length:1242
Protein Length:413
Start: 1392430
Stop: 1393671
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07105.1|AE004791_2 (AE004791) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 406/413 (98%), Positives = 408/413 (98%)
Sequence:
ATGGATAGCCCGTCCACTCCCGCTCGTCCGCACCCCCAGGCCAGCCCGCGATGGCTGGCAGTTGCCAATGTG
ATCTTCGCCGGCATCGCCGCCGCCCTGCATGTCGGCAAGGCGACCATCGCCCTGCCGTCGCTGCAACGGAGC
TTCGGCGGCGACCTCGCCGCGCTGAGCTGGATCATGTCCGCCTTTCCGTTCGTCGGCGTATTCGGCGGCATC
GCCGCTGGCCTCCTGGTGCGTCGCTGGGGAGATCGCCGGCTGCTGACCGGCGGACTGGCGATTCTCGGCGGA
GCGAGCCTGCTCGGTGCGTCGATGCAGGACTTCGCCTGGTTGCTCGCCACTCGCTTCGTCGAGGGGCTCGGT
TTCCTCATCGTGGTGGTGGCGGCGCCCGCCGTGTTGCACAGGATCACCAGCGAGACGCGGCGCAGCGTGGTG
TTCGGTCTGTGGAGCACCTTCATGGCAGGCGGAATCGCCCTCTCGATGCTGTTCGGGCCGCTGCTCGCGGAC
TGGCGCGCCGACTGGCAACTGAGCGCACTGCTGGTACTGGTCGCGGCGCTGCTGCTGCCGCTCAGCGTCCCT
GCCGACGATGGGCGCAGGGCGGCAGGCGTGAGGCCGGCCGGTCTTGGCACGTTGCTCAAGGTTCCGGCGATC
ACCCTGCTGGCGCTCGGCTTCACCACCTACAACCTGCAGTTCTTCGCCCTGATGACGTTCCTCCCCGTGTTC
CTCATGCAGCGCCTGGGTGTCGCCCTGGAGACTGCGGGACTCATCGGCGCGGCCATCGTCGCGGCGAACGCC
CTGGGCAATGTCGCGGCGGGCTTCATCCTTTCCCGCGGCATACGTCCCGGCGCCTTGCTGGCGACCACCGCG
ATCCTGATGGGAGTCACCGGTGCGGCGTTCTTCCATGCCGCGACGCCGGGGCTCCTGGCGATTGCGCTGGGG
TTCGTCTTCTCGGCGGTCGCCGGCATGCTTCCCACCACCGTGCTGGCGACCGCGCCGCTGGCCTCGCCCACG
CCTTCGCTGACGCCACTGGCCATCGGCTGGGTAATGCAGGGCAACTACCTGGGGCAGGTGATCGGCCCCTTG
CTGATCGGCCTGATCGTCAGCCGTTTCGACTGGTCGGGCGCGATCGGCCTGATGCTGGTCGCGGGCGCGGCG
GGGGCCGTCCTGGGGTTCTGCCTGCTGCGTGCGCTGGACGGCCTGCCTCGCGCCATTGCCACGGGTTCCGCG
GCTCGCCCCGCGGATTAG
Translation:
MDSPSTPARPHPQASPRWLAVANVIFAGIAAALHVGKATIALPSLQRSFGGDLAALSWIMSAFPFVGVFGGI
AAGLLVRRWGDRRLLTGGLAILGGASLLGASMQDFAWLLATRFVEGLGFLIVVVAAPAVLHRITSETRRSVV
FGLWSTFMAGGIALSMLFGPLLADWRADWQLSALLVLVAALLLPLSVPADDGRRAAGVRPAGLGTLLKVPAI
TLLALGFTTYNLQFFALMTFLPVFLMQRLGVALETAGLIGAAIVAANALGNVAAGFILSRGIRPGALLATTA
ILMGVTGAAFFHAATPGLLAIALGFVFSAVAGMLPTTVLATAPLASPTPSLTPLAIGWVMQGNYLGQVIGPL
LIGLIVSRFDWSGAIGLMLVAGAAGAVLGFCLLRALDGLPRAIATGSAARPAD*
AnnotationID:1538GeneID:1529
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 07:07:30
Gene Name:
Confidence Code:3
GeneProduct:putative MFS permease
Cell Localization:()
Synonyms:PA3718
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2814,KOG2532
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31774.1| (BX640440) putative integral membrane protein [Bordetella
           bronchiseptica]
          Length = 410

 Score =  226 bits (576), Expect = 2e-58
 Identities = 144/384 (37%), Positives = 196/384 (51%), Gaps = 9/384 (2%)

>gb|AAK65720.1| (AE007292) putative transmembrane transport protein [Sinorhizobium
           meliloti]
          Length = 412

 Score =  219 bits (557), Expect = 3e-56
 Identities = 134/371 (36%), Positives = 196/371 (52%), Gaps = 7/371 (1%)








 
Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  89.6% aligned
Score = 77.9 bits (192), Expect = 4e-15
Identities = 89/357 (24%), Positives = 136/357 (38%), Gaps = 7/357 (1%)

KOG2532, Permease of the major facilitator superfamily 
[Carbohydrate transport and metabolism]
CD-Length = 466 residues,  77.0% aligned
Score = 70.7 bits (173), Expect = 6e-13
Identities = 73/362 (20%), Positives = 123/362 (33%), Gaps = 38/362 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3061




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20207




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31835




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1529_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1529
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2719
                           PA3718_tr
                           translation of PA3718
                           413
                           98.30
                           98.78
                           0
                           2019.0
     

     
     
85390
                           gb|AAG07105.1|AE004791_2
                           (AE004791) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           413
                           98.30
                           98.78
                           0
                           2019.0
     

     






      

          
GC ORFID: 44531How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3718Glimmer Score: 

          
Start: 3561507Stop: 3560266

          
Length: 1242


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3718 translation of PA3718Homolog Bit Score 782.0

          
Other Homologs:  t_PA3718 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATAGCCCGTCCACTCCCGCTCGTCCGCACCCCCAGGCCAGCCCGCGATGGCTGGCAGTTGCCAATGTG 
ATCTTCGCCGGCATCGCCGCCGCCCTGCATGTCGGCAAGGCGACCATCGCCCTGCCGTCGCTGCAACGGAGC 
TTCGGCGGCGACCTCGCCGCGCTGAGCTGGATCATGTCCGCCTTTCCGTTCGTCGGCGTATTCGGCGGCATC 
GCCGCTGGCCTCCTGGTGCGTCGCTGGGGAGATCGCCGGCTGCTGACCGGCGGACTGGCGATTCTCGGCGGA 
GCGAGCCTGCTCGGTGCGTCGATGCAGGACTTCGCCTGGTTGCTCGCCACTCGCTTCGTCGAGGGGCTCGGT 
TTCCTCATCGTGGTGGTGGCGGCGCCCGCCGTGTTGCACAGGATCACCAGCGAGACGCGGCGCAGCGTGGTG 
TTCGGTCTGTGGAGCACCTTCATGGCAGGCGGAATCGCCCTCTCGATGCTGTTCGGGCCGCTGCTCGCGGAC 
TGGCGCGCCGACTGGCAACTGAGCGCACTGCTGGTACTGGTCGCGGCGCTGCTGCTGCCGCTCAGCGTCCCT 
GCCGACGATGGGCGCAGGGCGGCAGGCGTGAGGCCGGCCGGTCTTGGCACGTTGCTCAAGGTTCCGGCGATC 
ACCCTGCTGGCGCTCGGCTTCACCACCTACAACCTGCAGTTCTTCGCCCTGATGACGTTCCTCCCCGTGTTC 
CTCATGCAGCGCCTGGGTGTCGCCCTGGAGACTGCGGGACTCATCGGCGCGGCCATCGTCGCGGCGAACGCC 
CTGGGCAATGTCGCGGCGGGCTTCATCCTTTCCCGCGGCATACGTCCCGGCGCCTTGCTGGCGACCACCGCG 
ATCCTGATGGGAGTCACCGGTGCGGCGTTCTTCCATGCCGCGACGCCGGGGCTCCTGGCGATTGCGCTGGGG 
TTCGTCTTCTCGGCGGTCGCCGGCATGCTTCCCACCACCGTGCTGGCGACCGCGCCGCTGGCCTCGCCCACG 
CCTTCGCTGACGCCACTGGCCATCGGCTGGGTAATGCAGGGCAACTACCTGGGGCAGGTGATCGGCCCCTTG 
CTGATCGGCCTGATCGTCAGCCGTTTCGACTGGTCGGGCGCGATCGGCCTGATGCTGGTCGCGGGCGCGGCG 
GGGGCCGTCCTGGGGTTCTGCCTGCTGCGTGCGCTGGACGGCCTGCCTCGCGCCATTGCCACGGGTTCCGCG 
GCTCGCCCCGCGGATTAG