ViewGene
Locus Name:
GeneID:
Location:

GeneID:1528
TrivialName: PA14_29320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29320
PAO1 Ortholog Locus:PA2691
Sequence Length:1206
Protein Length:401
Start: 2535805
Stop: 2537010
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06079.1|AE004697_4 (AE004697) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 399/401 (99%), Positives = 399/401 (99%)
Sequence:
ATGAAACAACGTATCCTGATCGTCGGTGCCGGATTCGCCGGCATGTGGAGCGCGCTGAGCGCAGTCCGCCAG
CTCGACCGCCAGGGCCGCGACGACGTCGAGGTCGCGGTGCTCGCGCCGCAGCCTGAGCTGCGCATCCGCCCG
CGTTTCTACGAGCCTGACGTGCAGCGCATGGCGGCGCCGCTGGGCGAATTGTTCGCCGCGGTCGGCGTGCGT
TTCGTGCAGGGCAGCGCGCAGCGCATCGACGTGGCCGGCAAGCGGGTGGAGTACCGCGATGCCGAGGGCACG
CCGGCGCAGCTGGACTACGACCGCCTGGTACTGGCGGCCGGCAGCGGCGTGTGGCGTCCGGCGAGTGTCGTC
GGCATCGACGCGGCCTTCGATGTCGACCAGTTGGAAGACGCCCTGCGCCTGGAGGCACACCTGCATGCCCTG
CGCGACTTGCCGGATTCGCCGGCACGCAACACCGTGGTGGTCGCCGGCGGCGGCTTCACCGGCATCGAGACC
GCCACCGAGATGCCGGCGCGCCTGCGGGCGATCCTCGGCGAGAAAGCGGCGCTGCGAGTGATCGTGGTCGAC
CGCGGCGCCGCCATCGGCGCATCGATGGGCGCGGACCTGAGCGGCTTGATCGCCGAGGCCTCGGCGGAACTG
GGCGTGGAGTGGTGCCTGGGGCGTTCGGTGGCGGCGGTGGATGCCGAGGGCGTGACGCTCGACGACGGCCAG
CGGATCGAGGCGAAGACCGTGGTCTGGACCGTGGGCGTGCGGGCCAGCACGCTGACCGGACAGATTCCGGGC
GAGCGCGATGCCCAGGGTCGCCTGCATGTCGACCGCAACCTCAAGGTGCTCGGCCTCGACGATGTCTACGCC
ACCGGCGACGTGGCCCGCGCGGCTACCGACGACCTCGGCAACCATGCCCTGATGACCTGCCAGCACGCCATC
GCCCTGGGTCGCTCGGCCGGCAACAACGTGGCCGCCGACCTGCTCGGCGTCGAGCCGATTCCCTACAGCCAG
GTGAAGTACGTGACCTGTCTCGACCTCGGCGGCTGGGGCGCGGTGTTCACTGAGGGCTGGGACCGCCAGGTA
CGGTTCGTGCGCGAGGAGGGCAAGAAGATCAAGACCGAGATCAATGGCGTGTGGATCTACCCGCCGGCGGCG
GACCGCGCCGTGGCGCTGGCGGCGGCCGACCCACTGATTCCGGTGGTGGCCTGA
Translation:
MKQRILIVGAGFAGMWSALSAVRQLDRQGRDDVEVAVLAPQPELRIRPRFYEPDVQRMAAPLGELFAAVGVR
FVQGSAQRIDVAGKRVEYRDAEGTPAQLDYDRLVLAAGSGVWRPASVVGIDAAFDVDQLEDALRLEAHLHAL
RDLPDSPARNTVVVAGGGFTGIETATEMPARLRAILGEKAALRVIVVDRGAAIGASMGADLSGLIAEASAEL
GVEWCLGRSVAAVDAEGVTLDDGQRIEAKTVVWTVGVRASTLTGQIPGERDAQGRLHVDRNLKVLGLDDVYA
TGDVARAATDDLGNHALMTCQHAIALGRSAGNNVAADLLGVEPIPYSQVKYVTCLDLGGWGAVFTEGWDRQV
RFVREEGKKIKTEINGVWIYPPAADRAVALAAADPLIPVVA*
AnnotationID:1537GeneID:1528
AnnotatorUID: danlee
Modification Date/Time: 2005-10-12 11:11:16
Gene Name:
Confidence Code:3
GeneProduct:putative NADH dehydrogenase, FAD-containing subunit
Cell Localization:()
Synonyms:PA2691
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1252
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|48729405|ref|ZP_00263156.1|  COG1252: NADH dehydrogenase, FAD-containing subunit 
[Pseudomonas fluorescens PfO-1]
     Length=400
     Score =  550 bits (1416),  Expect = 4e-155
     Identities = 280/399 (70%), Positives = 320/399 (80%), Gaps = 0/399 (0%)

gi|24984466|gb|AAN68475.1|  pyridine nucleotide-disulphide oxidoreductase family protein        
[Pseudomonas putida KT2440]
     Length=400
     Score =  523 bits (1346),  Expect = 6e-147
     Identities = 272/401 (67%), Positives = 313/401 (78%), Gaps = 4/401 (0%)

gi|46317441|ref|ZP_00218019.1|  COG1252: NADH dehydrogenase, FAD-containing subunit [Burkholderia         
cepacia R18194]
     Length=395
     Score =  489 bits (1260),  Expect = 5e-137
     Identities = 252/395 (63%), Positives = 296/395 (74%), Gaps = 0/395 (0%)






 
Structural Features:
COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy 
production and conversion].
             CD-Length = 405 residues,  94.1% aligned
             Score =  262 bits (670), Expect = 8e-71






   
Genomic Context:






   
Comment:


















    ReferenceID:3059




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20205




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1528
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2718
                           PA2691_tr
                           translation of PA2691
                           401
                           99.50
                           99.50
                           0
                           2019.0
     

     
     
85382
                           gb|AAG06079.1|AE004697_4
                           (AE004697) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           401
                           99.50
                           99.50
                           0
                           2019.0
     

     
     
85383
                           gb|AAN68475.1|AE016480_2
                           (AE016784) pyridine nucleotide-disulphide oxidoreductase family protein [Pseudomonas putida KT2440]
                           403
                           67.49
                           77.66
                           5
                           1352.0
     

     
     
85384
                           dbj|BAC48057.1|
                           (AP005945) bll2792 [Bradyrhizobium japonicum USDA 110]
                           409
                           53.05
                           67.72
                           16
                           1053.0
     

     
     
85385
                           emb|CAC49555.1|
                           (AL603646) putative dehydrogenase, oxidoreductase FAD flavoprotein [Sinorhizobium meliloti]
                           409
                           50.85
                           66.50
                           16
                           1011.0
     

     






      

          
GC ORFID: 44530How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2691Glimmer Score: 

          
Start: 2418121Stop: 2416916

          
Length: 1206


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2691 translation of PA2691Homolog Bit Score 782.0

          
Other Homologs:  t_PA2691 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACAACGTATCCTGATCGTCGGTGCCGGATTCGCCGGCATGTGGAGCGCGCTGAGCGCAGTCCGCCAG 
CTCGACCGCCAGGGCCGCGACGACGTCGAGGTCGCGGTGCTCGCGCCGCAGCCTGAGCTGCGCATCCGCCCG 
CGTTTCTACGAGCCTGACGTGCAGCGCATGGCGGCGCCGCTGGGCGAATTGTTCGCCGCGGTCGGCGTGCGT 
TTCGTGCAGGGCAGCGCGCAGCGCATCGACGTGGCCGGCAAGCGGGTGGAGTACCGCGATGCCGAGGGCACG 
CCGGCGCAGCTGGACTACGACCGCCTGGTACTGGCGGCCGGCAGCGGCGTGTGGCGTCCGGCGAGTGTCGTC 
GGCATCGACGCGGCCTTCGATGTCGACCAGTTGGAAGACGCCCTGCGCCTGGAGGCACACCTGCATGCCCTG 
CGCGACTTGCCGGATTCGCCGGCACGCAACACCGTGGTGGTCGCCGGCGGCGGCTTCACCGGCATCGAGACC 
GCCACCGAGATGCCGGCGCGCCTGCGGGCGATCCTCGGCGAGAAAGCGGCGCTGCGAGTGATCGTGGTCGAC 
CGCGGCGCCGCCATCGGCGCATCGATGGGCGCGGACCTGAGCGGCTTGATCGCCGAGGCCTCGGCGGAACTG 
GGCGTGGAGTGGTGCCTGGGGCGTTCGGTGGCGGCGGTGGATGCCGAGGGCGTGACGCTCGACGACGGCCAG 
CGGATCGAGGCGAAGACCGTGGTCTGGACCGTGGGCGTGCGGGCCAGCACGCTGACCGGACAGATTCCGGGC 
GAGCGCGATGCCCAGGGTCGCCTGCATGTCGACCGCAACCTCAAGGTGCTCGGCCTCGACGATGTCTACGCC 
ACCGGCGACGTGGCCCGCGCGGCTACCGACGACCTCGGCAACCATGCCCTGATGACCTGCCAGCACGCCATC 
GCCCTGGGTCGCTCGGCCGGCAACAACGTGGCCGCCGACCTGCTCGGCGTCGAGCCGATTCCCTACAGCCAG 
GTGAAGTACGTGACCTGTCTCGACCTCGGCGGCTGGGGCGCGGTGTTCACTGAGGGCTGGGACCGCCAGGTA 
CGGTTCGTGCGCGAGGAGGGCAAGAAGATCAAGACCGAGATCAATGGCGTGTGGATCTACCCGCCGGCGGCG 
GACCGCGCCGTGGCGCTGGCGGCGGCCGACCCACTGATTCCGGTGGTGGCCTGA