ViewGene
Locus Name:
GeneID:
Location:

GeneID:1527
TrivialName: PA14_56530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56530
PAO1 Ortholog Locus:PA4347
Sequence Length:1155
Protein Length:384
Start: 5040342
Stop: 5039188
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07735.1|AE004851_3 (AE004851) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 381/384 (99%), Positives = 382/384 (99%)
Sequence:
ATGCTAGGGTTGCCCCTCGACCGTCGAGAGGGCCCGCCGATGCCCGCTTTGCCGTTGTCCCGCCGCGCCCTC
GCCGCGCTGGCCCTGGTATTCGCCCTCCCTGCCCTGGCCGAAGACTGGCCCGACACCGACTGGCCCCGTGCC
CAACAGCCCGCGGGGCCGGCGCTGGAGGCATTCGAGCGCTATGCCTTCGGCCGTCGCGACGATGTTCGTCGC
AAAGGCATCCGTACCGACGCGGTAGTGGTGATCCGCGACGGTCGCCTGCTCTATGAGCGCTACGCCGGCCCG
AGCCGTGCCGAGACCCCGCACCTTACCTGGTCGGTGAGCAAGAGCCTGCTCGCCACGCTGCTCGGCGTCGCC
GAGGGCGAAGGGCGCTTCCAGCTCGACGACCCGGTGGCGCGCTACTACCCGCCGTTCGCCCGTCATCCCGAG
GTGACGTTGCGCCACCTGCTGAACTGGTCTTCCGGGCTGGACTGGCAGGAGGACTACGAGTTCGCGCCATTG
AAATCCTCCGTGGTGGCGATGCTCTACACCCGTGGGCGTGACGACATGGCCGGCTTCGTCGCCGAGACCCCG
CCGGCCCGGCCGCCGGGCCGGCGTTTCCGCTACTCCAGCGGCGACAGCAACGTGCTGGCGGCGGCCCTCCAC
GGCATGCTCGGCGCGGACTATGCCGAGTACCCCTGGCGCGCGCTGTTCGAGCCGCTGGGCATCCGTTCGGCG
GTATGGGAGCGAGACGCCGCCGGCACGTTCGTCGGCTCGTCGTACGTCTACATGAGCGCCCGCGACCTGGCG
CGCGTCGGCCTGCTGATGCAGCGCCACGGGCGCTGGCGCGAGCGGCAACTGCTGCCGCTGGCATGGGTCGAG
TTCAACCTGACGCCCTTCGCCCGCTACCGGCCGAGCGCGGAAGAGGAGGGCGAGGCGGTGCCGGGCGGCCAG
TGGTGGTTGAACCGTGCGGTGAAAGGCGCGCGGGCGCCCTGGCCGGACGTCGCCGAGACCGCCTTCGCCGCG
CTCGGCCACTGGGGCCAGGCGCTCTACGTGCTGCCCGAGGAGAAGCTGGTGATCGTGCGCTACGCCGACGAC
CGCGACGGGCGTTTCCGTCACAACGAATTCCTGCGCCTGGCGCAGGCGGCGTTCGCCGGGGAGGCGCGGCCA
TGA
Translation:
MLGLPLDRREGPPMPALPLSRRALAALALVFALPALAEDWPDTDWPRAQQPAGPALEAFERYAFGRRDDVRR
KGIRTDAVVVIRDGRLLYERYAGPSRAETPHLTWSVSKSLLATLLGVAEGEGRFQLDDPVARYYPPFARHPE
VTLRHLLNWSSGLDWQEDYEFAPLKSSVVAMLYTRGRDDMAGFVAETPPARPPGRRFRYSSGDSNVLAAALH
GMLGADYAEYPWRALFEPLGIRSAVWERDAAGTFVGSSYVYMSARDLARVGLLMQRHGRWRERQLLPLAWVE
FNLTPFARYRPSAEEEGEAVPGGQWWLNRAVKGARAPWPDVAETAFAALGHWGQALYVLPEEKLVIVRYADD
RDGRFRHNEFLRLAQAAFAGEARP*
AnnotationID:1536GeneID:1527
AnnotatorUID: diggins
Modification Date/Time: 2005-05-01 08:08:34
Gene Name:
Confidence Code:3
GeneProduct:putative beta-lactamase
Cell Localization:()
Synonyms:PA4347
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:putative hydrolase
Functional Category Confidence Code:5
COGs:COG1680,pfam00144
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57802.1| (AE016871) hydrolase, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 368

 Score =  470 bits (1209), Expect = e-132
 Identities = 229/368 (62%), Positives = 272/368 (73%), Gaps = 7/368 (1%)

>emb|CAC46772.1| (AL591789) PUTATIVE HYDROLASE TRANSMEMBRANE PROTEIN [Sinorhizobium
           meliloti]
          Length = 453

 Score =  178 bits (451), Expect = 6e-44
 Identities = 127/328 (38%), Positives = 161/328 (49%), Gaps = 25/328 (7%)







 
Structural Features:
COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins 
[Defense mechanisms]
CD-Length = 390 residues,  98.7% aligned
Score =  142 bits (357), Expect = 2e-34
Identities = 109/406 (26%), Positives = 151/406 (37%), Gaps = 56/406 (13%)

pfam00144, Beta-lactamase, Beta-lactamase.
CD-Length = 324 residues,  92.0% aligned
Score =  123 bits (310), Expect = 6e-29
Identities = 76/321 (23%), Positives = 107/321 (33%), Gaps = 53/321 (16%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3057




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17099




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1527_cdd.html


    		




 
URL:

















    ReferenceID:20203




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1527
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2717
                           PA4347_tr
                           translation of PA4347
                           384
                           99.21
                           99.47
                           0
                           2023.0
     

     
     
85379
                           gb|AAG07735.1|AE004851_3
                           (AE004851) hypothetical protein PA4347 [Pseudomonas aeruginosa PAO1]
                           384
                           99.21
                           99.47
                           0
                           2023.0
     

     
     
85381
                           gb|AAN66514.1|AE016280_6
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           391
                           60.61
                           71.35
                           20
                           1217.0
     

     
     
85380
                           gb|AAO57802.1|
                           (AE016871) hydrolase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           388
                           59.02
                           70.10
                           24
                           1212.0
     

     






      

          
GC ORFID: 44529How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4347Glimmer Score: 

          
Start: 4304018Stop: 4302864

          
Length: 1155


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4347 translation of PA4347Homolog Bit Score 783.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2074 (ORF: BLASTX 461.0), t_PA4347 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTAGGGTTGCCCCTCGACCGTCGAGAGGGCCCGCCGATGCCCGCTTTGCCGTTGTCCCGCCGCGCCCTC 
GCCGCGCTGGCCCTGGTATTCGCCCTCCCTGCCCTGGCCGAAGACTGGCCCGACACCGACTGGCCCCGTGCC 
CAACAGCCCGCGGGGCCGGCGCTGGAGGCATTCGAGCGCTATGCCTTCGGCCGTCGCGACGATGTTCGTCGC 
AAAGGCATCCGTACCGACGCGGTAGTGGTGATCCGCGACGGTCGCCTGCTCTATGAGCGCTACGCCGGCCCG 
AGCCGTGCCGAGACCCCGCACCTTACCTGGTCGGTGAGCAAGAGCCTGCTCGCCACGCTGCTCGGCGTCGCC 
GAGGGCGAAGGGCGCTTCCAGCTCGACGACCCGGTGGCGCGCTACTACCCGCCGTTCGCCCGTCATCCCGAG 
GTGACGTTGCGCCACCTGCTGAACTGGTCTTCCGGGCTGGACTGGCAGGAGGACTACGAGTTCGCGCCATTG 
AAATCCTCCGTGGTGGCGATGCTCTACACCCGTGGGCGTGACGACATGGCCGGCTTCGTCGCCGAGACCCCG 
CCGGCCCGGCCGCCGGGCCGGCGTTTCCGCTACTCCAGCGGCGACAGCAACGTGCTGGCGGCGGCCCTCCAC 
GGCATGCTCGGCGCGGACTATGCCGAGTACCCCTGGCGCGCGCTGTTCGAGCCGCTGGGCATCCGTTCGGCG 
GTATGGGAGCGAGACGCCGCCGGCACGTTCGTCGGCTCGTCGTACGTCTACATGAGCGCCCGCGACCTGGCG 
CGCGTCGGCCTGCTGATGCAGCGCCACGGGCGCTGGCGCGAGCGGCAACTGCTGCCGCTGGCATGGGTCGAG 
TTCAACCTGACGCCCTTCGCCCGCTACCGGCCGAGCGCGGAAGAGGAGGGCGAGGCGGTGCCGGGCGGCCAG 
TGGTGGTTGAACCGTGCGGTGAAAGGCGCGCGGGCGCCCTGGCCGGACGTCGCCGAGACCGCCTTCGCCGCG 
CTCGGCCACTGGGGCCAGGCGCTCTACGTGCTGCCCGAGGAGAAGCTGGTGATCGTGCGCTACGCCGACGAC 
CGCGACGGGCGTTTCCGTCACAACGAATTCCTGCGCCTGGCGCAGGCGGCGTTCGCCGGGGAGGCGCGGCCA 
TGA