ViewGene
Locus Name:
GeneID:
Location:

GeneID:1526
TrivialName: PA14_49280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49280
PAO1 Ortholog Locus:PA1171
Sequence Length:1197
Protein Length:398
Start: 4378040
Stop: 4376844
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04560.1|AE004547_6 (AE004547) probable transglycolase [Pseudomonas aeruginosa PAO1]
Identities = 394/398 (98%), Positives = 395/398 (99%)
Sequence:
ATGCGCAGCCTTCTTCTCTCCTCGCTGGCCCTGCTACCCGCCCTGGCCCTGGCGCAACCCGACGCCTCGAGC
TTCCCTTCCTGCCTCGCCGGCCTGCAGAAGAAGGCCCAGGCGCAGGGCATTTCCGCCGACAGTTATGAGCGC
TTCACCAGCGGCCTGCAGGCCGACCTCAGCGTGCTCGACCTGCTCGACGCGCAGCCGGAGTTCACCACCCCG
CTGTGGGACTACCTGGCCGGCCTGGTGGACGAGCAGCGGGTCAGCGATGGCAAGGCGATGCTCGCCCAGCAC
GACAAGCTGCTCGACCAGGTGGCCGCGCGCTACGGCGTGGACAAGTACACGGTGGTGGCGGTGTGGGGCGTG
GAAAGCGACTACGGGCGGATCTTCGGCAAGCGTCCGCTGCTGACCTCGCTGTCGACCCTGTCCTGCTACGGG
CGCCGCCAGTCGTTCTTCCAGGGCGAGTTCCTCGCCACCCTGAAGCTGTTGCAGGCCGGCGACATCCGCGAC
GCCGGCATCACCGGCTCCTGGGCCGGGGCCTTCGGCCATACCCAGTTCATGCCATCGACCTACGCGCGGATC
GCCGTGGACTTCGACGGCGACGGTCGTCGCGACCTGGTAGGCAGCGTGCCGGATGCCCTCGGTTCCACCGCC
AACTACCTGAAGAAGGCTGGCTGGCGCACGGGACAGCCGTGGGGCTATGAAGTGAAGGTGCCGGCCGACTTC
CCCGCCAGCCTGGGCGGGCGCGGCAAGCGCCAGCCGCTGTCGGCCTGGGTCGCCCGTGGGGTGAAGCGGGCC
GACGGCCAGCCGCTGCCGGGCGGCGACGAGAAGGCCGCGATCCTCCTGCCGACCGGGGCCCAGGGCCCGGCC
TTCCTGGTCTATCGCAACTACGATGCGATCTATTCCTACAACGCCGCGGAAAGCTACGCGCTGGCCATCGCC
CTGCTTTCCGACCGCCTGCGCGGCGGCAGCGGCCTGGTGGCGTCCTGGCCGACCGACGACCCGGGCATCAGC
CGGCTCGAGCGCAAGCAATTGCAGAAGGCGTTGCTGGCGCGCGGCTACGACATCGGCGAGGCCGACGGGCTG
ATCGGCACCAGCACGCGCAAGGCGATCCAGGCCGAGCAGAAGCGCCTCGGCCTGACCCCGGCCGACGGTCGC
GCCGGGCGCAAGATCCTCGAGGCGCTGAAGGGCGCCCAGCCCTGA
Translation:
MRSLLLSSLALLPALALAQPDASSFPSCLAGLQKKAQAQGISADSYERFTSGLQADLSVLDLLDAQPEFTTP
LWDYLAGLVDEQRVSDGKAMLAQHDKLLDQVAARYGVDKYTVVAVWGVESDYGRIFGKRPLLTSLSTLSCYG
RRQSFFQGEFLATLKLLQAGDIRDAGITGSWAGAFGHTQFMPSTYARIAVDFDGDGRRDLVGSVPDALGSTA
NYLKKAGWRTGQPWGYEVKVPADFPASLGGRGKRQPLSAWVARGVKRADGQPLPGGDEKAAILLPTGAQGPA
FLVYRNYDAIYSYNAAESYALAIALLSDRLRGGSGLVASWPTDDPGISRLERKQLQKALLARGYDIGEADGL
IGTSTRKAIQAEQKRLGLTPADGRAGRKILEALKGAQP*
AnnotationID:1535GeneID:1526
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 15:03:04
Gene Name:
Confidence Code:3
GeneProduct:probable transglycolase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2951, COG3409
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3055




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16971




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.







    
Reference Type:Blast (text/plain)







    
Data:PA1171_CDS.cgi


    		




 
URL:

















    ReferenceID:20201




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1526
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2715
                           PA1171_tr
                           translation of PA1171
                           398
                           98.99
                           99.24
                           0
                           2022.0
     

     
     
85361
                           gb|AAG04560.1|AE004547_6
                           (AE004547) probable transglycolase [Pseudomonas aeruginosa PAO1]
                           398
                           98.99
                           99.24
                           0
                           2022.0
     

     
     
85365
                           emb|CAE38463.1|
                           (BX640432) putative peptidoglycan-binding protein [Bordetella parapertussis]
                           412
                           58.98
                           73.30
                           17
                           1261.0
     

     
     
85364
                           emb|CAE34073.1|
                           (BX640447) putative peptidoglycan-binding protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           412
                           58.98
                           73.30
                           17
                           1261.0
     

     
     
85366
                           emb|CAE42032.1|
                           (BX640416) putative peptidoglycan-binding protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           412
                           58.73
                           73.05
                           17
                           1256.0
     

     






      

          
GC ORFID: 44528How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1171Glimmer Score: 

          
Start: 575868Stop: 577064

          
Length: 1197


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1171 translation of PA1171Homolog Bit Score 783.0

          
Other Homologs:  t_PA1171 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCAGCCTTCTTCTCTCCTCGCTGGCCCTGCTACCCGCCCTGGCCCTGGCGCAACCCGACGCCTCGAGC 
TTCCCTTCCTGCCTCGCCGGCCTGCAGAAGAAGGCCCAGGCGCAGGGCATTTCCGCCGACAGTTATGAGCGC 
TTCACCAGCGGCCTGCAGGCCGACCTCAGCGTGCTCGACCTGCTCGACGCGCAGCCGGAGTTCACCACCCCG 
CTGTGGGACTACCTGGCCGGCCTGGTGGACGAGCAGCGGGTCAGCGATGGCAAGGCGATGCTCGCCCAGCAC 
GACAAGCTGCTCGACCAGGTGGCCGCGCGCTACGGCGTGGACAAGTACACGGTGGTGGCGGTGTGGGGCGTG 
GAAAGCGACTACGGGCGGATCTTCGGCAAGCGTCCGCTGCTGACCTCGCTGTCGACCCTGTCCTGCTACGGG 
CGCCGCCAGTCGTTCTTCCAGGGCGAGTTCCTCGCCACCCTGAAGCTGTTGCAGGCCGGCGACATCCGCGAC 
GCCGGCATCACCGGCTCCTGGGCCGGGGCCTTCGGCCATACCCAGTTCATGCCATCGACCTACGCGCGGATC 
GCCGTGGACTTCGACGGCGACGGTCGTCGCGACCTGGTAGGCAGCGTGCCGGATGCCCTCGGTTCCACCGCC 
AACTACCTGAAGAAGGCTGGCTGGCGCACGGGACAGCCGTGGGGCTATGAAGTGAAGGTGCCGGCCGACTTC 
CCCGCCAGCCTGGGCGGGCGCGGCAAGCGCCAGCCGCTGTCGGCCTGGGTCGCCCGTGGGGTGAAGCGGGCC 
GACGGCCAGCCGCTGCCGGGCGGCGACGAGAAGGCCGCGATCCTCCTGCCGACCGGGGCCCAGGGCCCGGCC 
TTCCTGGTCTATCGCAACTACGATGCGATCTATTCCTACAACGCCGCGGAAAGCTACGCGCTGGCCATCGCC 
CTGCTTTCCGACCGCCTGCGCGGCGGCAGCGGCCTGGTGGCGTCCTGGCCGACCGACGACCCGGGCATCAGC 
CGGCTCGAGCGCAAGCAATTGCAGAAGGCGTTGCTGGCGCGCGGCTACGACATCGGCGAGGCCGACGGGCTG 
ATCGGCACCAGCACGCGCAAGGCGATCCAGGCCGAGCAGAAGCGCCTCGGCCTGACCCCGGCCGACGGTCGC 
GCCGGGCGCAAGATCCTCGAGGCGCTGAAGGGCGCCCAGCCCTGA