ViewGene
Locus Name:
GeneID:
Location:

GeneID:1523
TrivialName: PA14_50380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50380
PAO1 Ortholog Locus:PA1085
Sequence Length:1203
Protein Length:400
Start: 4478986
Stop: 4477784
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04474.1|AE004539_16 (AE004539) flagellar protein FlgJ [Pseudomonas aeruginosa PAO1]
Identities = 399/400 (99%), Positives = 400/400 (100%)
Sequence:
ATGGATTCCCGTTTGCTCAGCGGTATCGGCGCAGGCCCCGACAGCGGCTCCTATACCGATCTCAACCGCCTC
AACCAGCTCAAGGTCGGCAAGGACCGCGACGGCGAGGCGAACATCCGCAAGGTCGCCCAGGAATTCGAATCG
CTGTTCCTCAACGAGATGCTCAAGTCCATGCGTTCGGCCAACGAAGCGCTGGGCGACGGCAATTTCATGAAC
AGCCAGACCACCAAGCAGTACCAGGACATGTACGACCAGCAACTGTCGGTGAGCCTGTCGAAGAATGCCGGC
GGCATCGGCCTGGCCGACGTGCTGGTGCGCCAGTTGTCGAAGATGAAGCAAGGCTCCAGGGGCAACGGCGAA
AACCCGTTCGCCCGGGTCGCCGAGAACGGCGCCGGTCGCTGGCCGAGCAACCCCAGCGCGCAGGCCGGCAAG
GCCCTGCCGATGCCGGAAGCCGGCCGCGACGACTCGAAGCTGCTCAACCAGAGGCGCCTGGCGCTGCCGGGC
AAGCTGGCCGAGCGCATGCTCGCCGGCATCGTTCCCTCCGCCTCGCCGGCCGCCAGCCAGATGCAGAGCCTG
GGCCAGGACAGCTACCTGCCGGCGCAGAGCTACCCGGCGGCGAGCCGCCGCGGTTTCTCCACCGATGGCGTC
GACAGCCAGGGCAGCCGGCGCATCGCCCAGCCGCCGCTGGCCAGGGGCAAGTCGATGTTCGCCTCGGCCGAC
GAGTTCATCGCCACCATGCTGCCGATGGCCCAGAAGGCCGCCGAGCGGATCGGCGTCGATGCCCGCTACCTG
GTGGCCCAGGCCGCGCTGGAGACCGGCTGGGGCAAATCGATCATCCGCCAGCAGGATGGCGGCAGCAGCCAC
AACCTGTTCGGCATCAAGACCGGCAGCCGCTGGGATGGTGCCTCGGCGCGCGCCCTCACCACCGAATACGAA
GGCGGCAAGGCGGTCAAGGAGGTCGCGGCGTTCCGCTCCTACTCGTCGTTCGAGCAGAGCTTCCACGACTAC
GTCAGCTTCCTCCAGGGCAACGACCGCTACCAGAACGCCCTGGACAGCGCCGCCAACCCCGAGCGCTTCATG
CAGGAACTGCAGCGCGCCGGCTACGCCACCGATCCGCAGTACGCCCGCAAGGTGGCGCAGATCGCCAGACAG
ATGCAGACCTACCAGGCCGTCGCCGCCGCCGGCACGCCGCCTCTGGGTTGA
Translation:
MDSRLLSGIGAGPDSGSYTDLNRLNQLKVGKDRDGEANIRKVAQEFESLFLNEMLKSMRSANEALGDGNFMN
SQTTKQYQDMYDQQLSVSLSKNAGGIGLADVLVRQLSKMKQGSRGNGENPFARVAENGAGRWPSNPSAQAGK
ALPMPEAGRDDSKLLNQRRLALPGKLAERMLAGIVPSASPAASQMQSLGQDSYLPAQSYPAASRRGFSTDGV
DSQGSRRIAQPPLARGKSMFASADEFIATMLPMAQKAAERIGVDARYLVAQAALETGWGKSIIRQQDGGSSH
NLFGIKTGSRWDGASARALTTEYEGGKAVKEVAAFRSYSSFEQSFHDYVSFLQGNDRYQNALDSAANPERFM
QELQRAGYATDPQYARKVAQIARQMQTYQAVAAAGTPPLG*
AnnotationID:1532GeneID:1523
AnnotatorUID: danlee
Modification Date/Time: 2004-05-20 16:04:53
Gene Name:flgJ
Confidence Code:2
GeneProduct:flagellar protein FlgJ
Cell Localization:()
Synonyms:PA1085
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1705, COG3951
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:






 
Structural Features:
COG1705, FlgJ, Muramidase (flagellum-specific) 
        CD-Length = 201 residues,  96.5% aligned
        Score =  181 bits (460), Expect = 2e-46
COG3951, COG3951, Rod binding protein. Score: 135, 7e-33






   
Genomic Context:
Cluster of flagellar biosynthetic genes from flgB through flgL 






   
Comment:


















    ReferenceID:3049




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20195




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1523
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2712
                           PA1085_tr
                           translation of PA1085
                           400
                           99.75
                           99.99
                           0
                           2025.0
     

     
     
85240
                           gb|AAG04474.1|AE004539_16
                           (AE004539) flagellar protein FlgJ [Pseudomonas aeruginosa PAO1]
                           400
                           99.75
                           99.99
                           0
                           2025.0
     

     
     
85241
                           gb|AAN69960.1|AE016634_9
                           (AE016790) peptidoglycan hydrolase FlgJ [Pseudomonas putida KT2440]
                           403
                           54.83
                           68.73
                           22
                           1029.0
     

     
     
85242
                           gb|AAO55461.1|
                           (AE016862) peptidoglycan hydrolase FlgJ [Pseudomonas syringae pv. tomato str. DC3000]
                           436
                           50.68
                           63.30
                           56
                           992.0
     

     
     
85243
                           gb|AAF95337.1|
                           (AE004291) flagellar protein FlgJ [Vibrio cholerae O1 biovar eltor str. N16961]
                           404
                           32.67
                           45.29
                           96
                           517.0
     

     






      

          
GC ORFID: 44525How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1085Glimmer Score: 

          
Start: 474922Stop: 476124

          
Length: 1203


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1085 translation of PA1085Homolog Bit Score 784.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7901 (ORF: BLASTX 373.0), t_PA1085 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATTCCCGTTTGCTCAGCGGTATCGGCGCAGGCCCCGACAGCGGCTCCTATACCGATCTCAACCGCCTC 
AACCAGCTCAAGGTCGGCAAGGACCGCGACGGCGAGGCGAACATCCGCAAGGTCGCCCAGGAATTCGAATCG 
CTGTTCCTCAACGAGATGCTCAAGTCCATGCGTTCGGCCAACGAAGCGCTGGGCGACGGCAATTTCATGAAC 
AGCCAGACCACCAAGCAGTACCAGGACATGTACGACCAGCAACTGTCGGTGAGCCTGTCGAAGAATGCCGGC 
GGCATCGGCCTGGCCGACGTGCTGGTGCGCCAGTTGTCGAAGATGAAGCAAGGCTCCAGGGGCAACGGCGAA 
AACCCGTTCGCCCGGGTCGCCGAGAACGGCGCCGGTCGCTGGCCGAGCAACCCCAGCGCGCAGGCCGGCAAG 
GCCCTGCCGATGCCGGAAGCCGGCCGCGACGACTCGAAGCTGCTCAACCAGAGGCGCCTGGCGCTGCCGGGC 
AAGCTGGCCGAGCGCATGCTCGCCGGCATCGTTCCCTCCGCCTCGCCGGCCGCCAGCCAGATGCAGAGCCTG 
GGCCAGGACAGCTACCTGCCGGCGCAGAGCTACCCGGCGGCGAGCCGCCGCGGTTTCTCCACCGATGGCGTC 
GACAGCCAGGGCAGCCGGCGCATCGCCCAGCCGCCGCTGGCCAGGGGCAAGTCGATGTTCGCCTCGGCCGAC 
GAGTTCATCGCCACCATGCTGCCGATGGCCCAGAAGGCCGCCGAGCGGATCGGCGTCGATGCCCGCTACCTG 
GTGGCCCAGGCCGCGCTGGAGACCGGCTGGGGCAAATCGATCATCCGCCAGCAGGATGGCGGCAGCAGCCAC 
AACCTGTTCGGCATCAAGACCGGCAGCCGCTGGGATGGTGCCTCGGCGCGCGCCCTCACCACCGAATACGAA 
GGCGGCAAGGCGGTCAAGGAGGTCGCGGCGTTCCGCTCCTACTCGTCGTTCGAGCAGAGCTTCCACGACTAC 
GTCAGCTTCCTCCAGGGCAACGACCGCTACCAGAACGCCCTGGACAGCGCCGCCAACCCCGAGCGCTTCATG 
CAGGAACTGCAGCGCGCCGGCTACGCCACCGATCCGCAGTACGCCCGCAAGGTGGCGCAGATCGCCAGACAG 
ATGCAGACCTACCAGGCCGTCGCCGCCGCCGGCACGCCGCCTCTGGGTTGA