ViewGene
Locus Name:
GeneID:
Location:

GeneID:1522
TrivialName: PA14_04640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04640
PAO1 Ortholog Locus:PA0354
Sequence Length:1197
Protein Length:398
Start: 413580
Stop: 412384
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03743.1|AE004473_5 (AE004473) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 398/398 (100%), Positives = 398/398 (100%)
Sequence:
ATGACCCTGCCCAGCTTGCGTCTCAAAGCCAACGCCGAGCGCCGCCTGCGCGCCGGCCACCTGTGGGTCTAC
AGCAACGAGGTGGATGTCGCCGCGACGCCGCTGAATGCCTTCGCCGCCGGCGACCAGGCGGTGCTGGAAATG
GCCAACGGCAAGCCGCTGGGCATCGTCGCGCTGAGCCCGAACAACCTCATCTGCGGCCGCCTCATTTCCCGT
GATACCAAGCACGTTCTCGACAAATCACTGCTGGTTCATCGCATCAACATCGCCCTCAGCCTGCGCGAGCGG
CTTTTCGACAAGCCGTTCTACCGGCTGGTCTACGGCGATTCCGACCTGCTGCCCGGCCTGGTGGTCGATCGC
TTCGGCGACGTGCTGGTGGTGCAACTGGCGTCCGCGGCCATGGAACTGCGCAAGGACGAGGTGCTCGCTGCC
CTGCTGCAGGTGCTCAAGCCCGCCGCCGTGCTCTGGAAGAACGACTCCAGCGCGCGCGACGCCGAGGGCCTG
GAGCGCTACGTGGCCAACGCCTACGGCGAAGTGCCGGAGTGGGTTGCGCTGGAAGAGAACGGCGTGAAGTTC
GAGGCGCCGGTGCTGGCCGGGCAGAAGACCGGCTGGTTCTACGACCACCGCATGAACCGCGCGCGCCTGGCG
CCCTACGTGCAGGGCAAGCGGGTCCTCGACCTGTTCAGCTATATCGGTGGCTGGGGCATCCAGGCCGCCGCC
TTCGGCGCCAGCGAAGTGATGTGCGTGGACGCGTCCGCCTTCGCCCTCGACGGCGTCGAGCGCAACGCGGCG
CTGAACGGCGTGGCGGAGAAGGTCGCCTGCGTCGAGGGCGACGTGTTCGAGGCCCTGCGCGAGCTGAAGGCC
GCCGACGAACGCTTCGACGTGGTGATCGCCGACCCGCCGGCCTTCATCAAGCGCAAGAAGGACCTGAAGAAC
GGCGAGGCCGCCTACCGCCGTCTCAACGAACAGGCCATGCGCCTGCTGAGCAAGGACGGCATCCTGGTCAGC
GCCTCCTGCTCGATGCACCTGCCCGAGGACGACCTGCAGAACATCCTGATCGGCAGCGCCCGCCATCTCGAC
CGCAACATCCAGCTGCTCGAGCGCGGCGGCCAGGGCCCCGACCATCCGGTGCAcCTGGCGATCGCGGAAACC
CGCTACATCAaGAGCCTGACCTGCCGGCTGCTGCCCAACGGCTGA
Translation:
MTLPSLRLKANAERRLRAGHLWVYSNEVDVAATPLNAFAAGDQAVLEMANGKPLGIVALSPNNLICGRLISR
DTKHVLDKSLLVHRINIALSLRERLFDKPFYRLVYGDSDLLPGLVVDRFGDVLVVQLASAAMELRKDEVLAA
LLQVLKPAAVLWKNDSSARDAEGLERYVANAYGEVPEWVALEENGVKFEAPVLAGQKTGWFYDHRMNRARLA
PYVQGKRVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGVAEKVACVEGDVFEALRELKA
ADERFDVVIADPPAFIKRKKDLKNGEAAYRRLNEQAMRLLSKDGILVSASCSMHLPEDDLQNILIGSARHLD
RNIQLLERGGQGPDHPVHLAIAETRYIKSLTCRLLPNG*
AnnotationID:1531GeneID:1522
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 18:06:08
Gene Name:
Confidence Code:3
GeneProduct:putative SAM-dependent methyltransferase
Cell Localization:()
Synonyms:PA0354
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1092
Secondary Functional Category(ies):nucleotide biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1092, Predicted SAM-dependent methyltransferases
CD-Length = 393 residues, 100.0% aligned
Score =  365 bits (939), Expect = 4e-102
Identities = 161/396 (40%), Positives = 223/396 (56%), Gaps = 9/396 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3047




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20193




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33694




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1522_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1522
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2711
                           PA0354_tr
                           translation of PA0354
                           398
                           99.99
                           99.99
                           0
                           2027.0
     

     
     
85236
                           gb|AAG03743.1|AE004473_5
                           (AE004473) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           398
                           99.99
                           99.99
                           0
                           2027.0
     

     
     
85237
                           gb|AAO53956.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           398
                           84.92
                           93.96
                           0
                           1796.0
     

     
     
85238
                           gb|AAN70692.1|AE016712_10
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           398
                           84.67
                           92.71
                           0
                           1776.0
     

     
     
85239
                           gb|AAR35998.1|
                           (AE017216) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           403
                           38.46
                           57.32
                           12
                           740.0
     

     






      

          
GC ORFID: 44524How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0354Glimmer Score: 

          
Start: 6214922Stop: 6213726

          
Length: 1197


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0354 translation of PA0354Homolog Bit Score 785.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6828 (ORF: BLASTX 697.0), t_PA0354 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTGCCCAGCTTGCGTCTCAAAGCCAACGCCGAGCGCCGCCTGCGCGCCGGCCACCTGTGGGTCTAC 
AGCAACGAGGTGGATGTCGCCGCGACGCCGCTGAATGCCTTCGCCGCCGGCGACCAGGCGGTGCTGGAAATG 
GCCAACGGCAAGCCGCTGGGCATCGTCGCGCTGAGCCCGAACAACCTCATCTGCGGCCGCCTCATTTCCCGT 
GATACCAAGCACGTTCTCGACAAATCACTGCTGGTTCATCGCATCAACATCGCCCTCAGCCTGCGCGAGCGG 
CTTTTCGACAAGCCGTTCTACCGGCTGGTCTACGGCGATTCCGACCTGCTGCCCGGCCTGGTGGTCGATCGC 
TTCGGCGACGTGCTGGTGGTGCAACTGGCGTCCGCGGCCATGGAACTGCGCAAGGACGAGGTGCTCGCTGCC 
CTGCTGCAGGTGCTCAAGCCCGCCGCCGTGCTCTGGAAGAACGACTCCAGCGCGCGCGACGCCGAGGGCCTG 
GAGCGCTACGTGGCCAACGCCTACGGCGAAGTGCCGGAGTGGGTTGCGCTGGAAGAGAACGGCGTGAAGTTC 
GAGGCGCCGGTGCTGGCCGGGCAGAAGACCGGCTGGTTCTACGACCACCGCATGAACCGCGCGCGCCTGGCG 
CCCTACGTGCAGGGCAAGCGGGTCCTCGACCTGTTCAGCTATATCGGTGGCTGGGGCATCCAGGCCGCCGCC 
TTCGGCGCCAGCGAAGTGATGTGCGTGGACGCGTCCGCCTTCGCCCTCGACGGCGTCGAGCGCAACGCGGCG 
CTGAACGGCGTGGCGGAGAAGGTCGCCTGCGTCGAGGGCGACGTGTTCGAGGCCCTGCGCGAGCTGAAGGCC 
GCCGACGAACGCTTCGACGTGGTGATCGCCGACCCGCCGGCCTTCATCAAGCGCAAGAAGGACCTGAAGAAC 
GGCGAGGCCGCCTACCGCCGTCTCAACGAACAGGCCATGCGCCTGCTGAGCAAGGACGGCATCCTGGTCAGC 
GCCTCCTGCTCGATGCACCTGCCCGAGGACGACCTGCAGAACATCCTGATCGGCAGCGCCCGCCATCTCGAC 
CGCAACATCCAGCTGCTCGAGCGCGGCGGCCAGGGCCCCGACCATCCGGTGCAcCTGGCGATCGCGGAAACC 
CGCTACATCAaGAGCCTGACCTGCCGGCTGCTGCCCAACGGCTGA