ViewGene
Locus Name:
GeneID:
Location:

GeneID:1521
TrivialName: PA14_55740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55740
PAO1 Ortholog Locus:PA4289
Sequence Length:1206
Protein Length:401
Start: 4974841
Stop: 4976046
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07677.1|AE004845_3 (AE004845) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 391/401 (97%), Positives = 392/401 (97%)
Sequence:
ATGCCAACCGCCAGCCGCCATCCCGACACTGCCCTCGCGGTGTTCCTCGCCTTCCTCAAGCTGGGCTGCAGC
GCCTTCGGCGGGCCCATCGCCCACCTCGGCTATTTCCGCGACGAGTTCGTCCGCCGCCGCGGCTGGCTGAGC
GAAAGCAGCTACGCCGACCTGGTCGCCCTCTGCCAGTTCCTCCCCGGCCCCGCCAGCAGCCAGGTCGGCATG
GCCCTCGGCCTGGCCCGCGCCGGCTACCCCGGCGCCCTCGCCGCCTGGCTCGGTTTCACCCTGCCCTCGGCG
CTGCTGCTGGTACTCTTCGCTCTCGGTCTGGGACGCTGGGGCACGCTGTTGCCCGAGGGCGTGCTGCATGGC
CTGAAGATCGCGGCGGTGGCGGTGGTGGCCCAGGCGATCTGGGGCATGGGCCGCAGCCTGTGTCCGGATCGC
CCGCGCCTGGCGCTGATGGCGCTGTCCTGCGCGAGCGTGCTGGCCTGGCCCACGGCCTGGGCCCAGGTCGCG
GTGATCGCCGGTGCCGGCCTGGCCGGCCTCGCCCTGTTGAAAACGGAAGCCGGGGAAGGCCACGAGCGGCTG
CCGATCGCCATTGGCTACCGCGGCGCGCTGCTGCTCCTCGCCCTGTTCGCCGTGCTGCTGGTCTGCCTGCCG
CTGGCCGCGCGCCTCTGGCCGGAACACTGGCTGCGCCTGCTCGATGCGTTCTACCGGGCCGGCTCGCTGGTG
TTCGGCGGCGGCCATGTGGTGCTGCCGCTGCTACAGGCGGAAGTGGTGCCCAACGGCTGGGTCGACGGCGAT
ACCTTCCTCGCCGGCTACGCGGCCGCCCAGGCGGTACCGGGCCCGCTCTTCACCTTCGCCGCGTTCCTCGGC
GCAGCCTCGGGCCCGGCGCCGAACGGCTGGAGCGGCGCGCTGCTGTGCCTGCTGGCGATCTTCCTGCCGTCG
TTCCTGCTGGTCGCCGGTGCCTTGCCATTCTGGGAACGCCTGCGCCACGAACGCCGGGTACGGGCAACGCTG
GCCGGGGTCAACGCGGCGGTGGTCGGCCTACTGCTGGCGGCGCTGTACCAGCCGCTCTGGACCGAAGGCATC
CTGCGCCCGGCCGACTTCGCCCTGCTGCTCTTCGCCCTGCTGGCCCTGCTCGCCTGGAAGACGCCGCCCTGG
CAAGTGGTGCTCGCCTGCGCCGTGGCCGGCGGCCTGATCGCCGCAGCCGGCTAG
Translation:
MPTASRHPDTALAVFLAFLKLGCSAFGGPIAHLGYFRDEFVRRRGWLSESSYADLVALCQFLPGPASSQVGM
ALGLARAGYPGALAAWLGFTLPSALLLVLFALGLGRWGTLLPEGVLHGLKIAAVAVVAQAIWGMGRSLCPDR
PRLALMALSCASVLAWPTAWAQVAVIAGAGLAGLALLKTEAGEGHERLPIAIGYRGALLLLALFAVLLVCLP
LAARLWPEHWLRLLDAFYRAGSLVFGGGHVVLPLLQAEVVPNGWVDGDTFLAGYAAAQAVPGPLFTFAAFLG
AASGPAPNGWSGALLCLLAIFLPSFLLVAGALPFWERLRHERRVRATLAGVNAAVVGLLLAALYQPLWTEGI
LRPADFALLLFALLALLAWKTPPWQVVLACAVAGGLIAAAG*
AnnotationID:1530GeneID:1521
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 07:07:02
Gene Name:
Confidence Code:3
GeneProduct:putative chromate transport protein
Cell Localization:()
Synonyms:chrA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2059,pfam02417
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE43192.1| (BX640419) putative chromate transport protein [Bordetella
           pertussis]
          Length = 409

 Score =  432 bits (1112), Expect = e-120
 Identities = 234/385 (60%), Positives = 267/385 (69%), Gaps = 4/385 (1%)

>emb|CAE36381.1| (BX640426) putative chromate transport protein [Bordetella
           parapertussis]
          Length = 409

 Score =  432 bits (1111), Expect = e-120
 Identities = 234/385 (60%), Positives = 266/385 (69%), Gaps = 4/385 (1%)

>emb|CAE31794.1| (BX640440) putative chromate transport protein [Bordetella
           bronchiseptica]
          Length = 441

 Score =  430 bits (1106), Expect = e-120
 Identities = 232/384 (60%), Positives = 263/384 (68%), Gaps = 2/384 (0%)








 
Structural Features:
COG2059, ChrA, Chromate transport protein ChrA 
[Inorganic ion transport and metabolism]
CD-Length = 195 residues,  88.7% aligned
Score =  147 bits (372), Expect = 2e-36
Identities = 75/173 (43%), Positives = 102/173 (58%), Gaps = 1/173 (0%)

pfam02417, Chromate_transp, Chromate transporter.
CD-Length = 177 residues,  94.9% aligned
Score = 86.4 bits (214), Expect = 6e-18
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 6/173 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3045




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20191




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36652




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1521_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1521
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2710
                           PA4289_tr
                           translation of PA4289
                           401
                           97.50
                           97.75
                           0
                           2026.0
     

     
     
85213
                           gb|AAG07677.1|AE004845_3
                           (AE004845) probable transporter [Pseudomonas aeruginosa PAO1]
                           401
                           97.50
                           97.75
                           0
                           2026.0
     

     
     
85215
                           emb|CAE43192.1|
                           (BX640419) putative chromate transport protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           415
                           58.31
                           66.26
                           20
                           1122.0
     

     
     
85216
                           emb|CAE36381.1|
                           (BX640426) putative chromate transport protein [Bordetella parapertussis]
                           415
                           58.31
                           66.02
                           20
                           1121.0
     

     
     
85218
                           gb|AAL43895.1|
                           (AE009239) chromate transport protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           416
                           56.97
                           66.10
                           26
                           1095.0
     

     






      

          
GC ORFID: 44523How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4289Glimmer Score: 

          
Start: 4238517Stop: 4239722

          
Length: 1206


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4289 translation of PA4289Homolog Bit Score 785.0

          
Other Homologs:  t_PA4289 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCAACCGCCAGCCGCCATCCCGACACTGCCCTCGCGGTGTTCCTCGCCTTCCTCAAGCTGGGCTGCAGC 
GCCTTCGGCGGGCCCATCGCCCACCTCGGCTATTTCCGCGACGAGTTCGTCCGCCGCCGCGGCTGGCTGAGC 
GAAAGCAGCTACGCCGACCTGGTCGCCCTCTGCCAGTTCCTCCCCGGCCCCGCCAGCAGCCAGGTCGGCATG 
GCCCTCGGCCTGGCCCGCGCCGGCTACCCCGGCGCCCTCGCCGCCTGGCTCGGTTTCACCCTGCCCTCGGCG 
CTGCTGCTGGTACTCTTCGCTCTCGGTCTGGGACGCTGGGGCACGCTGTTGCCCGAGGGCGTGCTGCATGGC 
CTGAAGATCGCGGCGGTGGCGGTGGTGGCCCAGGCGATCTGGGGCATGGGCCGCAGCCTGTGTCCGGATCGC 
CCGCGCCTGGCGCTGATGGCGCTGTCCTGCGCGAGCGTGCTGGCCTGGCCCACGGCCTGGGCCCAGGTCGCG 
GTGATCGCCGGTGCCGGCCTGGCCGGCCTCGCCCTGTTGAAAACGGAAGCCGGGGAAGGCCACGAGCGGCTG 
CCGATCGCCATTGGCTACCGCGGCGCGCTGCTGCTCCTCGCCCTGTTCGCCGTGCTGCTGGTCTGCCTGCCG 
CTGGCCGCGCGCCTCTGGCCGGAACACTGGCTGCGCCTGCTCGATGCGTTCTACCGGGCCGGCTCGCTGGTG 
TTCGGCGGCGGCCATGTGGTGCTGCCGCTGCTACAGGCGGAAGTGGTGCCCAACGGCTGGGTCGACGGCGAT 
ACCTTCCTCGCCGGCTACGCGGCCGCCCAGGCGGTACCGGGCCCGCTCTTCACCTTCGCCGCGTTCCTCGGC 
GCAGCCTCGGGCCCGGCGCCGAACGGCTGGAGCGGCGCGCTGCTGTGCCTGCTGGCGATCTTCCTGCCGTCG 
TTCCTGCTGGTCGCCGGTGCCTTGCCATTCTGGGAACGCCTGCGCCACGAACGCCGGGTACGGGCAACGCTG 
GCCGGGGTCAACGCGGCGGTGGTCGGCCTACTGCTGGCGGCGCTGTACCAGCCGCTCTGGACCGAAGGCATC 
CTGCGCCCGGCCGACTTCGCCCTGCTGCTCTTCGCCCTGCTGGCCCTGCTCGCCTGGAAGACGCCGCCCTGG 
CAAGTGGTGCTCGCCTGCGCCGTGGCCGGCGGCCTGATCGCCGCAGCCGGCTAG