ViewGene

Locus Name:
GeneID:
Location:

GeneID:1520
TrivialName: PA14_17820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17820
PAO1 Ortholog Locus:PA3592
Sequence Length:1188
Protein Length:395
Start: 1531236
Stop: 1532423
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06980.1|AE004779_12 (AE004779) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 391/395 (98%), Positives = 391/395 (98%)
Sequence:
ATGACCAATCAGACGGGCGCCCTGCGTGGCCTGAAAATCATCGATCTCAGCCGGGTCCTCGGCGGACCCTAC
TGCTCCCAGGCGCTGGCCGACCACGGCGCCGAGGTGATCAAGCTGGAACCCCTCGGCGGCGACGAGACCCGT
GGCTGGGGGCCGCCCTTCGAGGGCGACACGGCGTCCTACTTCAAGGGCGTGAACCGCAACAAGAAGGGCATC
GCCGTCGACCTGGCGACGGCGGAGGGCATCGAGCTGCTGCTGCGCTTGCTGGAGGACGCCGACGTACTGCTG
GAGAACTTCAAGCCCGGCACCCTGGCGCGTTGGGGGATCGGCTACGAGGAGGTGCTTCGCCAGCGCTTCCCA
CGGCTGGTCCACTGCGCGGTATCGGGCTTCGGCGCCGACGGCCCGCTCGGCGGCCTGCCCGGCTACGACGCG
GCGATCCAGGCTATGGCCGGACTGATGAGCGTGAACGGCGAGGCCGGCGGCGACGCGTTGCGCATCGGCCTG
CCGATCGTCGACATGGTCACCGGGCTGAACGCCATGGCCGGCATCCTCCTCGCCCTCCACGAGCGCCAGGTC
AGCGGGCGCGGGCAGTCGGTGGACATCGCCCTGTACGACTGCGGTATCTCCCTGCTGCACCCGCACCTGCCG
AACTACTTCGCTTCCGGACGTACGCCCCGGCGTAGCGGCAACGCCCATCCGAACATCGCGCCCTACGACAGC
TACCGCACCGGTACCGAGCCGATCTTCCTCGCCGTCGGCAACGACCGCCAGTTCGCCCGCCTGTGCGAGTAC
CTGGGAGCCGATGAACTGCCGGGGGACCCGCGCTTCGCCGACAACGGCAAGCGCTCGGTCAACCGCGAGGCG
CTGAAGCGCGCCCTGGAGGACTACCTGGCGGCCCACGACGGTCGCGAGCTGGCCGAGCTGCTGATCCGTCTC
GGCGTGCCCTGCGGAGTGATCGCCACGGTGGATCGGGTGGTGGAACACCCGCACACCCGCCATCGCGGGATG
GTCGTCGAACTCGAGGGCTATCGCGGCATCGCCTCGCCGGTGAAGCTTTCGCGCACCCCGGCCAGCTACCGC
GCCACGCCGCCGGTACTGGGCGGAGACACCCGGGAAGTCCTGGCGGAACTGGGATTGAGCGCCGAGGCGATC
GACGCGCTGGTCCGGCGCGGCATCGTCCGCGCCTGA
Translation:
MTNQTGALRGLKIIDLSRVLGGPYCSQALADHGAEVIKLEPLGGDETRGWGPPFEGDTASYFKGVNRNKKGI
AVDLATAEGIELLLRLLEDADVLLENFKPGTLARWGIGYEEVLRQRFPRLVHCAVSGFGADGPLGGLPGYDA
AIQAMAGLMSVNGEAGGDALRIGLPIVDMVTGLNAMAGILLALHERQVSGRGQSVDIALYDCGISLLHPHLP
NYFASGRTPRRSGNAHPNIAPYDSYRTGTEPIFLAVGNDRQFARLCEYLGADELPGDPRFADNGKRSVNREA
LKRALEDYLAAHDGRELAELLIRLGVPCGVIATVDRVVEHPHTRHRGMVVELEGYRGIASPVKLSRTPASYR
ATPPVLGGDTREVLAELGLSAEAIDALVRRGIVRA*
AnnotationID:1529GeneID:1520
AnnotatorUID: diggins
Modification Date/Time: 2005-07-03 09:09:34
Gene Name:
Confidence Code:3
GeneProduct:putative L-carnitine dehydratase
Cell Localization:()
Synonyms:PA3592
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative acyl-CoA transferases
Functional Category Confidence Code:5
COGs:COG1804,KOG3957
Secondary Functional Category(ies):central intermediary metabolism
EC Number:4.2.1.17
Status:ACTIVE
Pathway:
Carnitine metabolism (conversion of carnitine to gamma-butyrobetaine); second step.
Homology:
>dbj|BAB61747.1| (AB026669) L-carnitine dehydrogenase-like protein [Acinetobacter
           sp. NCIMB9871]
          Length = 405

 Score =  314 bits (804), Expect = 7e-85
 Identities = 171/405 (42%), Positives = 243/405 (60%), Gaps = 19/405 (4%)

>emb|CAD14498.1| (AL646061) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 420

 Score =  300 bits (768), Expect = 1e-80
 Identities = 174/406 (42%), Positives = 240/406 (59%), Gaps = 19/406 (4%)

>dbj|BAB60328.1| (AP000995) L-carnitine dehydratase [Thermoplasma volcanium]
          Length = 399

 Score =  298 bits (764), Expect = 3e-80
 Identities = 157/386 (40%), Positives = 229/386 (59%), Gaps = 6/386 (1%)
Structural Features:
COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase 
[Energy production and conversion]
CD-Length = 396 residues, 100.0% aligned
Score =  406 bits (1044), Expect = 6e-114
Identities = 186/399 (46%), Positives = 234/399 (58%), Gaps = 9/399 (2%)

KOG3957, Predicted L-carnitine dehydratase/alpha-methylacyl-CoA racemase 
[Lipid transport and metabolism]
CD-Length = 387 residues,  97.7% aligned
Score =  210 bits (535), Expect = 5e-55
Identities = 121/395 (30%), Positives = 189/395 (47%), Gaps = 25/395 (6%)
Genomic Context:
Comment:
ReferenceID:3043
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20189
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31950
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1520_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1520

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2708 PA3592_tr translation of PA3592 395 98.98 98.98 0 2027.0
85166 gb|AAG06980.1|AE004779_12 (AE004779) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 395 98.98 98.98 0 2027.0
85169 emb|CAE40633.1| (BX640411) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 402 60.69 70.39 35 1275.0
85168 emb|CAE38898.1| (BX640434) conserved hypothetical protein [Bordetella parapertussis] 402 60.69 70.64 35 1278.0
85167 emb|CAE34412.1| (BX640449) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 402 60.69 70.64 35 1278.0
GC ORFID: 44522How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3592Glimmer Score:
Start: 3422700Stop: 3421513
Length: 1188
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3592 translation of PA3592Homolog Bit Score 785.0
Other Homologs: t_PA0446 (ORF: BLASTX 305.0), t_PA3592 (ORF: GLIMMER)
GC ORF Sequence
ATGACCAATCAGACGGGCGCCCTGCGTGGCCTGAAAATCATCGATCTCAGCCGGGTCCTCGGCGGACCCTAC
TGCTCCCAGGCGCTGGCCGACCACGGCGCCGAGGTGATCAAGCTGGAACCCCTCGGCGGCGACGAGACCCGT
GGCTGGGGGCCGCCCTTCGAGGGCGACACGGCGTCCTACTTCAAGGGCGTGAACCGCAACAAGAAGGGCATC
GCCGTCGACCTGGCGACGGCGGAGGGCATCGAGCTGCTGCTGCGCTTGCTGGAGGACGCCGACGTACTGCTG
GAGAACTTCAAGCCCGGCACCCTGGCGCGTTGGGGGATCGGCTACGAGGAGGTGCTTCGCCAGCGCTTCCCA
CGGCTGGTCCACTGCGCGGTATCGGGCTTCGGCGCCGACGGCCCGCTCGGCGGCCTGCCCGGCTACGACGCG
GCGATCCAGGCTATGGCCGGACTGATGAGCGTGAACGGCGAGGCCGGCGGCGACGCGTTGCGCATCGGCCTG
CCGATCGTCGACATGGTCACCGGGCTGAACGCCATGGCCGGCATCCTCCTCGCCCTCCACGAGCGCCAGGTC
AGCGGGCGCGGGCAGTCGGTGGACATCGCCCTGTACGACTGCGGTATCTCCCTGCTGCACCCGCACCTGCCG
AACTACTTCGCTTCCGGACGTACGCCCCGGCGTAGCGGCAACGCCCATCCGAACATCGCGCCCTACGACAGC
TACCGCACCGGTACCGAGCCGATCTTCCTCGCCGTCGGCAACGACCGCCAGTTCGCCCGCCTGTGCGAGTAC
CTGGGAGCCGATGAACTGCCGGGGGACCCGCGCTTCGCCGACAACGGCAAGCGCTCGGTCAACCGCGAGGCG
CTGAAGCGCGCCCTGGAGGACTACCTGGCGGCCCACGACGGTCGCGAGCTGGCCGAGCTGCTGATCCGTCTC
GGCGTGCCCTGCGGAGTGATCGCCACGGTGGATCGGGTGGTGGAACACCCGCACACCCGCCATCGCGGGATG
GTCGTCGAACTCGAGGGCTATCGCGGCATCGCCTCGCCGGTGAAGCTTTCGCGCACCCCGGCCAGCTACCGC
GCCACGCCGCCGGTACTGGGCGGAGACACCCGGGAAGTCCTGGCGGAACTGGGATTGAGCGCCGAGGCGATC
GACGCGCTGGTCCGGCGCGGCATCGTCCGCGCCTGA