ViewGene

Locus Name:
GeneID:
Location:

GeneID:1517
TrivialName: PA14_53980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53980
PAO1 Ortholog Locus:PA0793
Sequence Length:1188
Protein Length:395
Start: 4787257
Stop: 4788444
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04182.1|AE004514_5 (AE004514) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 391/395 (98%), Positives = 394/395 (99%)
Sequence:
ATGGCCCCCCCCCCCCAGATCCGCATCCCCGCCACCTACCTACGCGGCGGCACCAGCAAGGGCGTGTTCTTC
CGCCTGGAAGACCTGCCGGAATCCTGCCGGGTCCCCGGCGAGGCGCGCGACCGGCTGTTCATGCGGGTGATC
GGCAGTCCCGACCCCTATGCCGCGCACATCGACGGGATGGGCGGCGCCACCTCCAGCACCAGCAAGTGCGTG
ATCCTCTCGAAGAGCAGCCAGCCGGGCCATGACGTCGACTACCTCTACGGCCAGGTCTCCATCGACAAGCCC
TTCGTCGACTGGAGCGGCAACTGCGGCAACCTCTCCACCGGGGCCGGCGCCTTCGCCCTGCACGCCGGGCTG
GTGGATCCGGCGCGGATACCGGAAAACGGCATCTGCGAGGTGCGCATCTGGCAGGCCAATATCGGCAAGACC
ATCATCGCCCACGTGCCGGTGAGCGGCGGCCAAGTCCAGGAAACCGGCGACTTCGAACTGGACGGAGTGACC
TTCCCGGCGGCCGAGATCGTGCTGGAGTTCCTCGACCCGTCCGACGACGGCGAGGACGGCGGCGCCATGTTC
CCCACCGGCAACCTGGTGGACGACCTGGAGGTGCCGGGGGTCGGCACCTTCAAGGCGACCATGATCAACGCC
GGGATTCCCACGGTGTTCGTCAATGCCGAGGAGATCGGCTACCGCGGCACCGAGCTGCGCGAAGAGATCAAC
GGCGACCCGCAGCAACTGGCGCGCTTCGAACGGATCCGCGTCGCCGGCGCCCTGCGCATGGGCCTGATCAAG
ACCCCCGAGGAAGCCGCGACCCGCCAGCACACGCCGAAGATCGCCTTCGTCGCCCCGCCCCGCGACTACCGC
ACCGCCAGCGGCAAGCTGGTGGCGGCCGGCGATATCGACCTGCTGGTCCGCGCGCTGTCCATGGGCAAGCTG
CACCACGCGATGATGGGTACCGCGGCGGTGGCCATCGGCACCGCCGCGGCCATTCCCGGCACCCTGGTGAAC
CTCGCCGCCGGCGGCGGCGAACGCAGCGCGGTACGCTTCGGCCATCCCTCCGGCACCCTGCGAGTGGGCGCC
GAGGCCAGCCAGGCGAACGGCGAATGGACGGTGACCAAGGCGATCATGAGCCGCAGCGCGCGAATCCTCATG
GAAGGCTGGGTGCGCGTACCCGGCGAGGCCTTCTGA
Translation:
MAPPPQIRIPATYLRGGTSKGVFFRLEDLPESCRVPGEARDRLFMRVIGSPDPYAAHIDGMGGATSSTSKCV
ILSKSSQPGHDVDYLYGQVSIDKPFVDWSGNCGNLSTGAGAFALHAGLVDPARIPENGICEVRIWQANIGKT
IIAHVPVSGGQVQETGDFELDGVTFPAAEIVLEFLDPSDDGEDGGAMFPTGNLVDDLEVPGVGTFKATMINA
GIPTVFVNAEEIGYRGTELREEINGDPQQLARFERIRVAGALRMGLIKTPEEAATRQHTPKIAFVAPPRDYR
TASGKLVAAGDIDLLVRALSMGKLHHAMMGTAAVAIGTAAAIPGTLVNLAAGGGERSAVRFGHPSGTLRVGA
EASQANGEWTVTKAIMSRSARILMEGWVRVPGEAF*
AnnotationID:1526GeneID:1517
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 15:03:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0793
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2828, pfam04303
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG2828, Uncharacterized protein conserved in bacteria.  Score: 557, 2e-159
pfam04303, DUF453, Protein of unknown function (DUF453). Score: 556, 3e-159
Genomic Context:
Comment:
ReferenceID:3037
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20183
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1517

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2705 PA0793_tr translation of PA0793 395 98.98 99.74 0 2027.0
85119 gb|AAG04182.1|AE004514_5 (AE004514) hypothetical protein PA0793 [Pseudomonas aeruginosa PAO1] 395 98.98 99.74 0 2027.0
85120 gb|AAN67950.1|AE016427_5 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440] 397 79.84 88.16 3 1653.0
85121 emb|CAD17270.1| (AL646076) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 397 77.83 86.64 3 1626.0
85122 gb|AAQ59725.1| (AE016917) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 396 77.77 86.86 1 1616.0
GC ORFID: 44519How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0793Glimmer Score:
Start: 166650Stop: 165463
Length: 1188
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0793 translation of PA0793Homolog Bit Score 785.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1065 (ORF: BLASTX 615.0), t_PA0793 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCCCCCCCCCCCAGATCCGCATCCCCGCCACCTACCTACGCGGCGGCACCAGCAAGGGCGTGTTCTTC
CGCCTGGAAGACCTGCCGGAATCCTGCCGGGTCCCCGGCGAGGCGCGCGACCGGCTGTTCATGCGGGTGATC
GGCAGTCCCGACCCCTATGCCGCGCACATCGACGGGATGGGCGGCGCCACCTCCAGCACCAGCAAGTGCGTG
ATCCTCTCGAAGAGCAGCCAGCCGGGCCATGACGTCGACTACCTCTACGGCCAGGTCTCCATCGACAAGCCC
TTCGTCGACTGGAGCGGCAACTGCGGCAACCTCTCCACCGGGGCCGGCGCCTTCGCCCTGCACGCCGGGCTG
GTGGATCCGGCGCGGATACCGGAAAACGGCATCTGCGAGGTGCGCATCTGGCAGGCCAATATCGGCAAGACC
ATCATCGCCCACGTGCCGGTGAGCGGCGGCCAAGTCCAGGAAACCGGCGACTTCGAACTGGACGGAGTGACC
TTCCCGGCGGCCGAGATCGTGCTGGAGTTCCTCGACCCGTCCGACGACGGCGAGGACGGCGGCGCCATGTTC
CCCACCGGCAACCTGGTGGACGACCTGGAGGTGCCGGGGGTCGGCACCTTCAAGGCGACCATGATCAACGCC
GGGATTCCCACGGTGTTCGTCAATGCCGAGGAGATCGGCTACCGCGGCACCGAGCTGCGCGAAGAGATCAAC
GGCGACCCGCAGCAACTGGCGCGCTTCGAACGGATCCGCGTCGCCGGCGCCCTGCGCATGGGCCTGATCAAG
ACCCCCGAGGAAGCCGCGACCCGCCAGCACACGCCGAAGATCGCCTTCGTCGCCCCGCCCCGCGACTACCGC
ACCGCCAGCGGCAAGCTGGTGGCGGCCGGCGATATCGACCTGCTGGTCCGCGCGCTGTCCATGGGCAAGCTG
CACCACGCGATGATGGGTACCGCGGCGGTGGCCATCGGCACCGCCGCGGCCATTCCCGGCACCCTGGTGAAC
CTCGCCGCCGGCGGCGGCGAACGCAGCGCGGTACGCTTCGGCCATCCCTCCGGCACCCTGCGAGTGGGCGCC
GAGGCCAGCCAGGCGAACGGCGAATGGACGGTGACCAAGGCGATCATGAGCCGCAGCGCGCGAATCCTCATG
GAAGGCTGGGTGCGCGTACCCGGCGAGGCCTTCTGA