ViewGene

Locus Name:
GeneID:
Location:

GeneID:1516
TrivialName: PA14_03050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03050
PAO1 Ortholog Locus:PA0247
Sequence Length:1185
Protein Length:394
Start: 270560
Stop: 269376
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA48483.1| (X68438) 4-hydroxybenzoate 3-monooxygenase [Pseudomonas fluorescens]
Identities = 393/394 (99%), Positives = 394/394 (100%)
Sequence:
ATGAAGACTCAAGTCGCCATCATCGGCGCCGGTCCGTCCGGCCTCCTGCTCGGCCAGTTGCTGCACAAGGCC
GGCATCGACAACGTGATCCTCGAACGCCAGACCCCGGACTACGTGCTCGGCCGCATCCGCGCCGGCGTGCTG
GAACAGGGTATGGTCGACCTGCTGCGCGAGGCCGGCGTCGACCGGCGCATGGCGCGCGACGGGCTGGTCCAC
GAAGGCGTGGAGATCGCCTTCGCCGGGCAGCGCCGGCGCATCAACCTGAAGCGCCTGAGCGGCGGCAAGACG
GTGACGGTCTACGGCCAGACCGAGGTCACCCGCGACCTCATGGAAGCCCGCGAAGCCTGCGGCGCCACTACC
GTCTACCAGGCCGCCGAGGTGCGCCTGCACGACCTGCAAGGTGAGCGCCCCTACGTGACCTTCGAACGCGAC
GGCGAACGGCTGCGCCTGGATTGCGACTACATCGCCGGCTGCGATGGCTTCCACGGCATCTCGCGGCAATCG
ATCCCGGCGGAACGGCTGAAGGTCTTCGAGCGGGTCTATCCGTTCGGCTGGCTCGGCCTGCTCGCCGACACC
CCGCCGGTCAGCCACGAACTGATCTACGCCAACCATCCGCGCGGCTTCGCCCTGTGCAGCCAGCGTTCGGCG
ACCCGCAGCCGCTACTACGTACAGGTGCCATTGACAGAGAAGGTCGAGGACTGGTCCGACGAGCGCTTCTGG
ACGGAACTGAAAGCGCGCCTCCCGGCCGAGGTGGCGGAGAAACTGGTGACCGGTCCTTCGCTGGAGAAGAGC
ATCGCGCCGCTGCGCAGCTTCGTGGTCGAGCCGATGCAGCATGGCCGGCTGTTCCTCGCCGGCGACGCCGCG
CACATCGTGCCGCCCACCGGCGCCAAGGGACTGAACCTGGCGGCCAGCGACGTCAGCACGCTCTACCGGCTG
CTGCTGAAGGCCTACCGCGAAGGGCGGGGCGAACTGCTGGAACGCTACTCGGCAATCTGCCTGCGGCGGATC
TGGAAGGCCGAACGCTTCTCCTGGTGGATGACTTCGGTGCTGCATCGCTTCCCCGACACCGACGCGTTCAGC
CAGCGCATCCAGCAGACCGAACTGGAGTACTACCTGGGCTCCGAGGCGGGCCTGGCGACCATCGCCGAGAAC
TATGTCGGCCTGCCCTACGAGGAAATCGAGTAG
Translation:
MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVH
EGVEIAFAGQRRRINLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERD
GERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA
TRSRYYVQVPLTEKVEDWSDERFWTELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAA
HIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFS
QRIQQTELEYYLGSEAGLATIAENYVGLPYEEIE*
AnnotationID:1525GeneID:1516
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 19:07:19
Gene Name:pobA
Confidence Code:1
GeneProduct:p-hydroxybenzoate hydroxylase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:4-hydroxybenzoate 3-monooxygenase
Functional Category Confidence Code:5
COGs:COG0654
Secondary Functional Category(ies):energy metabolism
EC Number:1.14.13.2
Status:ACTIVE
Pathway:
Homology:
>gb|AAG17455.2|AF302797_1 (AF302797) para-hydroxy benzoate hydroxylase [Pseudomonas sp.
           IMT40] [Pseudomonas indica]
          Length = 394

 Score =  646 bits (1666), Expect = 0.0
 Identities = 315/394 (79%), Positives = 351/394 (89%)

>dbj|BAB20910.1| (AB053354) p-hydroxybenzoate hydroxylase [Pseudomonas fluorescens]
          Length = 397

 Score =  606 bits (1562), Expect = e-173
 Identities = 291/394 (73%), Positives = 339/394 (86%)

>emb|CAC49895.1| (AL603647) putative 4-hydroxybenzoate hydroxylase protein
           [Sinorhizobium meliloti]
          Length = 390

 Score =  521 bits (1342), Expect = e-147
 Identities = 248/390 (63%), Positives = 305/390 (78%)
Structural Features:
COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and 
related FAD-dependent oxidoreductases 
[Coenzyme metabolism / Energy production and conversion]
CD-Length = 387 residues, 100.0% aligned
Score =  234 bits (597), Expect = 2e-62
Identities = 110/396 (27%), Positives = 157/396 (39%), Gaps = 18/396 (4%)
Genomic Context:
Comment:
ReferenceID:3035
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20181
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33610
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1516_cdd.html
URL:
ReferenceID:35451
Author/Investigator(s): Entsch B, Nan Y, Weaich K, Scott KF.
Title: Sequence and organization of pobA, the gene coding for p-hydroxybenzoate hydroxylase, an inducible enzyme from Pseudomonas aeruginosa.
PubMed: 2465205
MedLine:
Source:
Gene. 1988 Nov 30;71(2):279-91.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2465205
Homologs By Global Alignment
Gene ID:1516

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
85081 emb|CAA48483.1| (X68438) 4-hydroxybenzoate 3-monooxygenase; p-hydroxybenzoate hydroxylase [Pseudomonas fluorescens] 394 99.74 99.99 0 2036.0
2704 PA0247_tr translation of PA0247 394 99.23 99.99 0 2029.0
85082 gb|AAG03636.1|AE004463_1 (AE004463) p-hydroxybenzoate hydroxylase [Pseudomonas aeruginosa PAO1] 394 99.23 99.99 0 2029.0
85083 gb|AAA88455.1| (M23173) p-hydroxybenzoate hydroxylase [Pseudomonas aeruginosa] 394 99.23 99.99 0 2029.0
85084 gb|AAG17455.2|AF302797_1 (AF302797) para-hydroxy benzoate hydroxylase [Pseudomonas sp. IMT40] [Pseudomonas indica] 394 79.94 89.08 0 1666.0
GC ORFID: 44518How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0247Glimmer Score:
Start: 6071901Stop: 6070717
Length: 1185
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0247 translation of PA0247Homolog Bit Score 786.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7569 (ORF: BLASTX 644.0), t_PA0247 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGACTCAAGTCGCCATCATCGGCGCCGGTCCGTCCGGCCTCCTGCTCGGCCAGTTGCTGCACAAGGCC
GGCATCGACAACGTGATCCTCGAACGCCAGACCCCGGACTACGTGCTCGGCCGCATCCGCGCCGGCGTGCTG
GAACAGGGTATGGTCGACCTGCTGCGCGAGGCCGGCGTCGACCGGCGCATGGCGCGCGACGGGCTGGTCCAC
GAAGGCGTGGAGATCGCCTTCGCCGGGCAGCGCCGGCGCATCAACCTGAAGCGCCTGAGCGGCGGCAAGACG
GTGACGGTCTACGGCCAGACCGAGGTCACCCGCGACCTCATGGAAGCCCGCGAAGCCTGCGGCGCCACTACC
GTCTACCAGGCCGCCGAGGTGCGCCTGCACGACCTGCAAGGTGAGCGCCCCTACGTGACCTTCGAACGCGAC
GGCGAACGGCTGCGCCTGGATTGCGACTACATCGCCGGCTGCGATGGCTTCCACGGCATCTCGCGGCAATCG
ATCCCGGCGGAACGGCTGAAGGTCTTCGAGCGGGTCTATCCGTTCGGCTGGCTCGGCCTGCTCGCCGACACC
CCGCCGGTCAGCCACGAACTGATCTACGCCAACCATCCGCGCGGCTTCGCCCTGTGCAGCCAGCGTTCGGCG
ACCCGCAGCCGCTACTACGTACAGGTGCCATTGACAGAGAAGGTCGAGGACTGGTCCGACGAGCGCTTCTGG
ACGGAACTGAAAGCGCGCCTCCCGGCCGAGGTGGCGGAGAAACTGGTGACCGGTCCTTCGCTGGAGAAGAGC
ATCGCGCCGCTGCGCAGCTTCGTGGTCGAGCCGATGCAGCATGGCCGGCTGTTCCTCGCCGGCGACGCCGCG
CACATCGTGCCGCCCACCGGCGCCAAGGGACTGAACCTGGCGGCCAGCGACGTCAGCACGCTCTACCGGCTG
CTGCTGAAGGCCTACCGCGAAGGGCGGGGCGAACTGCTGGAACGCTACTCGGCAATCTGCCTGCGGCGGATC
TGGAAGGCCGAACGCTTCTCCTGGTGGATGACTTCGGTGCTGCATCGCTTCCCCGACACCGACGCGTTCAGC
CAGCGCATCCAGCAGACCGAACTGGAGTACTACCTGGGCTCCGAGGCGGGCCTGGCGACCATCGCCGAGAAC
TATGTCGGCCTGCCCTACGAGGAAATCGAGTAG