ViewGene

Locus Name:
GeneID:
Location:

GeneID:1515
TrivialName: PA14_66040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66040
PAO1 Ortholog Locus:PA4994
Sequence Length:1209
Protein Length:402
Start: 5882199
Stop: 5880991
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08379.1|AE004912_5 (AE004912) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 402/402 (100%), Positives = 402/402 (100%)
Sequence:
ATGTACCTGGAAACCCCGAAGAAATTCCGCAGCCTGGCTAACCAGGCGCATCAGGTCGCGGAAAACTATTTC
CGGCCGATCTCGCGCAAGTACGACAAGGCCGAACACGCCTATCCGAAGGAGCTGGACCTGCTCGCGGCCTTG
CTGGACGGCATGAACAGCGGCTCGCCCGAGGCTGTCGGCGCGACCTCGGCGAGCAAGCGCGCCGGCAAGCAG
GTAGAGGAGGGCATCAAGAACGGCGGCAACCTGTCGGCATTGCTCGGCGTGATGGAACTGTGCTGGGGCGAC
GTCGGCCTGCTCCTGGCCATGCCGCGCCAGGGGCTGGGCAACGCGGCGATCGCCGCGGTGGCCAACGAGGAG
CAGTTGCAGCGCTTCGGCGGCACCTGGGCGGCGATGGCGATCACCGAGCCGGGCTGCGGCTCGGACTCGGCG
GCGATTCGCACCACCGCGACCCAGGATGGCGACCACTATGTACTGAACGGCGAGAAGATTTTCGTCACTTCC
GGCGAGCGGGCCGATGCCGTGGTGGTCTGGGCCACCCTGAACCGCAACCTGGGGCGGGCGGCGATCAAGTCC
TTCGTGGTCGAGAAGGGCACGCCGGGGATGACCGTGACGCGCCTGGAGAAGAAGCTCGGGATCAAGGCTTCG
GATACCGCTTCGATCAGTTTCAATGATTGCCGGGTGCCGGCCGCGAACCTGCTGGGCAACGCCGAGGTCGAC
GTGCAGAAGGGTTTCGCCGGGGTCATGGAGACCTTCGACAATACCCGCCCGCTGGTGGCCGGCATGGCCGTC
GGGGTGGCCAAGGCGGCGCTGGACCGGACCCGCGAATTGCTGAAGAAGGCTGGCTGCAAGTTCGACTACAGG
AAACCGCTGCTCACCGTCAGCCACGCCGAGGCCACTCTCTATCGCCTGGAGGCGGAGTGGGAGGCAGCGCGC
CTGTTGACCTTGAAGGCGGCATGGATGGCCGACAACAAGCTGCCCAACTCGAAGGAAGCGTCCATCGCCAAG
GCCAAGGCTGGACGGGTGGCCAACGAGATCACCCTGAAGTGCGTGGAGCTGGCTGGCGCCCTCGGCTACGCC
GAGGATGAGCTGTTGGAGAAGTGGGCGCGGGACTCGAAGATCCTCGACATCTTCGAGGGCACCCAGCAGATC
CAGCTGCTCATCGTCGCTCGCCGCCTGCTCGGCAAGTCTTCCAGCCAGTTGAAGTAG
Translation:
MYLETPKKFRSLANQAHQVAENYFRPISRKYDKAEHAYPKELDLLAALLDGMNSGSPEAVGATSASKRAGKQ
VEEGIKNGGNLSALLGVMELCWGDVGLLLAMPRQGLGNAAIAAVANEEQLQRFGGTWAAMAITEPGCGSDSA
AIRTTATQDGDHYVLNGEKIFVTSGERADAVVVWATLNRNLGRAAIKSFVVEKGTPGMTVTRLEKKLGIKAS
DTASISFNDCRVPAANLLGNAEVDVQKGFAGVMETFDNTRPLVAGMAVGVAKAALDRTRELLKKAGCKFDYR
KPLLTVSHAEATLYRLEAEWEAARLLTLKAAWMADNKLPNSKEASIAKAKAGRVANEITLKCVELAGALGYA
EDELLEKWARDSKILDIFEGTQQIQLLIVARRLLGKSSSQLK*
AnnotationID:1524GeneID:1515
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 08:08:06
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA4994
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01158,cd00567,cd01157
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAA05331.1| (AJ002316) putative acyl-CoA dehydrogenase [Acinetobacter sp. ADP1]
          Length = 401

 Score =  597 bits (1539), Expect = e-170
 Identities = 306/403 (75%), Positives = 343/403 (85%), Gaps = 3/403 (0%)

>gb|AAK47567.1| (AE007137) acyl-CoA dehydrogenase [Mycobacterium tuberculosis
           CDC1551]
          Length = 401

 Score =  470 bits (1210), Expect = e-132
 Identities = 242/400 (60%), Positives = 298/400 (74%), Gaps = 3/400 (0%)

Structural Features:
cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues,  99.2% aligned
Score =  265 bits (680), Expect = 4e-72

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues,  99.2% aligned
Score =  228 bits (582), Expect = 1e-60

cd01157, MCAD, Medium chain acyl-CoA dehydrogenase (MCAD).
CD-Length = 378 residues,  99.5% aligned
Score =  206 bits (525), Expect = 4e-54
Genomic Context:
Comment:
ReferenceID:3033
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20179
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35071
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1515_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1515

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2703 PA4994_tr translation of PA4994 402 99.99 99.99 0 2029.0
85070 gb|AAG08379.1|AE004912_5 (AE004912) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] 402 99.99 99.99 0 2029.0
85071 emb|CAA05331.1| (AJ002316) putative acyl-CoA dehydrogenase [Acinetobacter sp. ADP1] 403 75.93 85.11 3 1545.0
85072 emb|CAB06275.1| (BX842582) PROBABLE ACYL-CoA DEHYDROGENASE FADE23 [Mycobacterium tuberculosis H37Rv] 405 60.00 74.81 7 1212.0
85073 gb|AAK47567.1| (AE007137) acyl-CoA dehydrogenase [Mycobacterium tuberculosis CDC1551] 405 60.00 74.81 7 1212.0
GC ORFID: 44517How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4994Glimmer Score:
Start: 5145882Stop: 5144674
Length: 1209
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4994 translation of PA4994Homolog Bit Score 786.0
Other Homologs: t_PA4994 (ORF: GLIMMER)
GC ORF Sequence
ATGTACCTGGAAACCCCGAAGAAATTCCGCAGCCTGGCTAACCAGGCGCATCAGGTCGCGGAAAACTATTTC
CGGCCGATCTCGCGCAAGTACGACAAGGCCGAACACGCCTATCCGAAGGAGCTGGACCTGCTCGCGGCCTTG
CTGGACGGCATGAACAGCGGCTCGCCCGAGGCTGTCGGCGCGACCTCGGCGAGCAAGCGCGCCGGCAAGCAG
GTAGAGGAGGGCATCAAGAACGGCGGCAACCTGTCGGCATTGCTCGGCGTGATGGAACTGTGCTGGGGCGAC
GTCGGCCTGCTCCTGGCCATGCCGCGCCAGGGGCTGGGCAACGCGGCGATCGCCGCGGTGGCCAACGAGGAG
CAGTTGCAGCGCTTCGGCGGCACCTGGGCGGCGATGGCGATCACCGAGCCGGGCTGCGGCTCGGACTCGGCG
GCGATTCGCACCACCGCGACCCAGGATGGCGACCACTATGTACTGAACGGCGAGAAGATTTTCGTCACTTCC
GGCGAGCGGGCCGATGCCGTGGTGGTCTGGGCCACCCTGAACCGCAACCTGGGGCGGGCGGCGATCAAGTCC
TTCGTGGTCGAGAAGGGCACGCCGGGGATGACCGTGACGCGCCTGGAGAAGAAGCTCGGGATCAAGGCTTCG
GATACCGCTTCGATCAGTTTCAATGATTGCCGGGTGCCGGCCGCGAACCTGCTGGGCAACGCCGAGGTCGAC
GTGCAGAAGGGTTTCGCCGGGGTCATGGAGACCTTCGACAATACCCGCCCGCTGGTGGCCGGCATGGCCGTC
GGGGTGGCCAAGGCGGCGCTGGACCGGACCCGCGAATTGCTGAAGAAGGCTGGCTGCAAGTTCGACTACAGG
AAACCGCTGCTCACCGTCAGCCACGCCGAGGCCACTCTCTATCGCCTGGAGGCGGAGTGGGAGGCAGCGCGC
CTGTTGACCTTGAAGGCGGCATGGATGGCCGACAACAAGCTGCCCAACTCGAAGGAAGCGTCCATCGCCAAG
GCCAAGGCTGGACGGGTGGCCAACGAGATCACCCTGAAGTGCGTGGAGCTGGCTGGCGCCCTCGGCTACGCC
GAGGATGAGCTGTTGGAGAAGTGGGCGCGGGACTCGAAGATCCTCGACATCTTCGAGGGCACCCAGCAGATC
CAGCTGCTCATCGTCGCTCGCCGCCTGCTCGGCAAGTCTTCCAGCCAGTTGAAGTAG