ViewGene
Locus Name:
GeneID:
Location:

GeneID:1514
TrivialName: PA14_10470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10470
PAO1 Ortholog Locus:PA4136
Sequence Length:1209
Protein Length:402
Start: 901559
Stop: 902767
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07523.1|AE004830_4 (AE004830) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 401/402 (99%), Positives = 402/402 (100%)
Sequence:
GTGCCTGCGAGTGCATCGAGGATTCAGGTCGGAAGCGGCGAACGACGCCTGTTGCTGCTGTTGTCGGCGCTG
GTGGCGTTCGGCCCGCTGTCGATCGACATGTATTTGCCGAGCCTGCCGGCGATCGCCGCCGATCTCGGCGCC
AGCGATGCCCAGGTGCAGCGGAGCATCAGCGGCTTCCTGGTCGGCTTCTGCGTCGGCATGCTGTTCTACGGC
CCCTTGTCCGACCGTTTCGGCCGGCGCCCGGTGCTGCTGGCCGGTATCGCCTTGTACCTGTTCAGCAGCCTG
GCCTGCGCGCTGGCCGACAGCGCGGGGCAACTGGTCCTGCTGAGGGTGCTCCAGGCCCTCGGCGGCGGCGCC
GCGTCGGTGCTGGCGCGGGCCATGGTGCGCGACCTCTATCCGTTGGGCGAGGCCGCCCGGATGCTGGCATTG
ATGCACATGGTGACCATGCTGGCACCGCTGGCCGCGCCGCTGCTCGGCGGCTACCTGATGCTCTGGGCCGGC
TGGCGCGCGTTGTTCGTGGTCCTGGCGCTGTTCGCCGGGCTCTGCCTGCTGGCGGTCTGGCGGGTCGCCGAA
AGCCACCCGCCGGAGCGCCGCGGCGGCAGCCTGGCCCAGGCCTTTCTCGCCTATGGGCGGCTGCTCGGCGAC
CGTCGCGCGCTGGGCTACGTGCTGTGCATGGGGCTGGCGTTCGCCGGGATGTTCGCCTACATCAGCGCCGCG
CCCTTCGTGTTCATCGAGCATTTCGGCGTGCGCGCGGAGCGCTTCGGCTGGTTCTTCGGCCTGAACATCCTC
GGCGTGATGCTCGCCACCTGGTGCAGCGCGCGCCTGGTGCGCCGCCACGGTCCGCGGCCGCTGCTGCGGGCC
GGCAGCCTGCTGGCCTGCCTGTCCGGGCTGTTCCTCCTCGGCTATGCGGCGCTCGGCGAGCGGGGCGGGTTG
TGGGCGCTGGTGCCGGGGCTGCTGTGCTTCGTCAGCGTCACCGGCCTGCTCGGCGCCAACTGCATCGCCAGC
CTGCTGGCGTTGTATCCCGGACAGGCCGGGGCGGCTTCGGCGGTGGCGGTGTCCGGGCAGTTCGGCCTCGGC
TGCCTGGCCAGCCTGGCGGTCGGCTGGCTGGCGCTGCCCGGCGTGCTGCCGATGGCGCTGGTGATGGCCGTC
TGCGGCGTCGGCAGCCTGCTCGCACTGGGCTTGGCCCTGCACGGCGGAAACCGTTGA
Translation:
MPASASRIQVGSGERRLLLLLSALVAFGPLSIDMYLPSLPAIAADLGASDAQVQRSISGFLVGFCVGMLFYG
PLSDRFGRRPVLLAGIALYLFSSLACALADSAGQLVLLRVLQALGGGAASVLARAMVRDLYPLGEAARMLAL
MHMVTMLAPLAAPLLGGYLMLWAGWRALFVVLALFAGLCLLAVWRVAESHPPERRGGSLAQAFLAYGRLLGD
RRALGYVLCMGLAFAGMFAYISAAPFVFIEHFGVRAERFGWFFGLNILGVMLATWCSARLVRRHGPRPLLRA
GSLLACLSGLFLLGYAALGERGGLWALVPGLLCFVSVTGLLGANCIASLLALYPGQAGAASAVAVSGQFGLG
CLASLAVGWLALPGVLPMALVMAVCGVGSLLALGLALHGGNR*
AnnotationID:1523GeneID:1514
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 13:01:54
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA4136, bcr
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK03617.1| (AE006190) Bcr [Pasteurella multocida]
          Length = 399

 Score =  293 bits (750), Expect = 1e-78
 Identities = 164/383 (42%), Positives = 238/383 (62%), Gaps = 10/383 (2%)

>dbj|BAC59479.1| (AP005077) multidrug resistance protein [Vibrio parahaemolyticus]
          Length = 412

 Score =  277 bits (709), Expect = 7e-74
 Identities = 149/379 (39%), Positives = 235/379 (62%), Gaps = 8/379 (2%)






 
Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  94.7% aligned
Score = 91.4 bits (227), Expect = 2e-19
Identities = 105/382 (27%), Positives = 146/382 (38%), Gaps = 11/382 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14381




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20177




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36870




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1514_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1514
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2701
                           PA4136_tr
                           translation of PA4136
                           402
                           99.75
                           99.99
                           0
                           2030.0
     

     
     
85059
                           gb|AAG07523.1|AE004830_4
                           (AE004830) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           402
                           99.50
                           99.99
                           0
                           2027.0
     

     
     
2702
                           PA3573_tr
                           translation of PA3573
                           412
                           41.26
                           56.06
                           30
                           696.0
     

     
     
85065
                           gb|AAG06961.1|AE004778_5
                           (AE004778) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           412
                           41.26
                           56.06
                           30
                           696.0
     

     
     
85066
                           gb|AAR33598.1|
                           (AE017207) drug resistance transporter, Bcr/CflA family [Geobacter sulfurreducens PCA]
                           419
                           41.05
                           54.41
                           25
                           694.0
     

     






      

          
GC ORFID: 44516How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4136Glimmer Score: 

          
Start: 4052378Stop: 4051170

          
Length: 1209


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4136 translation of PA4136Homolog Bit Score 786.0

          
Other Homologs:  t_PA3573 (ORF: BLASTX 271.0), psyr_15may02_Scaffold2_revised_gene3494 (ORF: BLASTX 266.0), t_PA4136 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCTGCGAGTGCATCGAGGATTCAGGTCGGAAGCGGCGAACGACGCCTGTTGCTGCTGTTGTCGGCGCTG 
GTGGCGTTCGGCCCGCTGTCGATCGACATGTATTTGCCGAGCCTGCCGGCGATCGCCGCCGATCTCGGCGCC 
AGCGATGCCCAGGTGCAGCGGAGCATCAGCGGCTTCCTGGTCGGCTTCTGCGTCGGCATGCTGTTCTACGGC 
CCCTTGTCCGACCGTTTCGGCCGGCGCCCGGTGCTGCTGGCCGGTATCGCCTTGTACCTGTTCAGCAGCCTG 
GCCTGCGCGCTGGCCGACAGCGCGGGGCAACTGGTCCTGCTGAGGGTGCTCCAGGCCCTCGGCGGCGGCGCC 
GCGTCGGTGCTGGCGCGGGCCATGGTGCGCGACCTCTATCCGTTGGGCGAGGCCGCCCGGATGCTGGCATTG 
ATGCACATGGTGACCATGCTGGCACCGCTGGCCGCGCCGCTGCTCGGCGGCTACCTGATGCTCTGGGCCGGC 
TGGCGCGCGTTGTTCGTGGTCCTGGCGCTGTTCGCCGGGCTCTGCCTGCTGGCGGTCTGGCGGGTCGCCGAA 
AGCCACCCGCCGGAGCGCCGCGGCGGCAGCCTGGCCCAGGCCTTTCTCGCCTATGGGCGGCTGCTCGGCGAC 
CGTCGCGCGCTGGGCTACGTGCTGTGCATGGGGCTGGCGTTCGCCGGGATGTTCGCCTACATCAGCGCCGCG 
CCCTTCGTGTTCATCGAGCATTTCGGCGTGCGCGCGGAGCGCTTCGGCTGGTTCTTCGGCCTGAACATCCTC 
GGCGTGATGCTCGCCACCTGGTGCAGCGCGCGCCTGGTGCGCCGCCACGGTCCGCGGCCGCTGCTGCGGGCC 
GGCAGCCTGCTGGCCTGCCTGTCCGGGCTGTTCCTCCTCGGCTATGCGGCGCTCGGCGAGCGGGGCGGGTTG 
TGGGCGCTGGTGCCGGGGCTGCTGTGCTTCGTCAGCGTCACCGGCCTGCTCGGCGCCAACTGCATCGCCAGC 
CTGCTGGCGTTGTATCCCGGACAGGCCGGGGCGGCTTCGGCGGTGGCGGTGTCCGGGCAGTTCGGCCTCGGC 
TGCCTGGCCAGCCTGGCGGTCGGCTGGCTGGCGCTGCCCGGCGTGCTGCCGATGGCGCTGGTGATGGCCGTC 
TGCGGCGTCGGCAGCCTGCTCGCACTGGGCTTGGCCCTGCACGGCGGAAACCGTTGA