ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1513

TrivialName: PA14_37130

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_37130

PAO1 Ortholog Locus: PA2122

Sequence Length: 1137

Protein Length: 378

Start: 3309397

Stop: 3308261

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05510.1|AE004639_8 (AE004639) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 372/378 (98%), Positives = 374/378 (98%)

Sequence:

ATGCCGACCATGTCCTTCGATCCCCAACCCTTTCGCCAGCAGTACCGCGCGGCCATCCGGCCCGGCTACAAC
CCCTGGCTGCACGCCGGCTTCGTCCTCGCCTACGGCGGCGCCTGGATCGTCTTCTTCCTCTCCCGGCTCGAG
CAGCCGAGCCTGCTGGAATGGCTGACGGTGCCGGCCGCGCTGGTGTTCTTCAACTGGGGCGAGTACCGCATC
CACAAGTCCCTCGGCCACCACAAGCACCCGCTGGGGCGGATGTTCTACAAGCGCCATACCGGCGACCACCAC
AGCTTCTTCGTCGCCGGCCAGATGCGCTACGAACAGGCACGCGACTGGCGGGTGATCCTGTTCCCGGCCTGG
CTGGTGGTGGTcTTCAGCCTCGGCGCGCTGCTCGCCTGGAGCCTGCTCGGCCTGCTGAACGACAACCTCGCC
GCGCTGTTCGCCGCGACCCTGCTGCTGGGCTACCTCAGCTACGAGATCTTCCACGCCTGCGAACACCTGCCG
CCGGAGCATCCGCTCAGCCGCCTGCCGTGGATCCGCCACATGCGCCGCCTGCACGAACTGCATCACCGTCGC
GAGCTGATGCAGACGCACAACTTCAACCTGGTCTTCCCGTTGATGGACTGGTGCTACGGCACCCTCCACTGG
GAAGCGGAACCCGCCGAGGAGCGCGCCATGACCCGCATGCAGCACCAGATCGAGATCGCCCGCGGGCCCGAG
GCGACCCTCGCCTACGCCGCCAGCCCGGGGCTCTGGCCGGAATGGCATCCCTCGTCGTTACGGGTCGACGGC
GCCTCGGGCCCGCTGCCGGCCGGCGCGCGCTTCGAGGAGGACATCCACGCCGGCGGCCGCGCCGGGCACCTG
TCCTGGACGGTGGTCGAGTACCAGCCGGGACACCTGTGGCGCGCCAACGCCCGTGGCGACCGGGGGCTGCAC
CTGCGCCTGAGCTACGAATGCCAGCCGAGCGCGGCCGGCACCCGCTTCGTGCGCACCCTGGAATACCGCTTC
GATGGCTGGTCGATGCGCCTGGCCAACCTGTTCCTGCTGCGCCGTCGCATCGAACGCGAGTCGGAGGAGTCC
ATGCAGCGCCTGCGCCGGGTCGCCGAGGCGCGGATAGCGGTGGCGGAAAGCGTATGA

Translation:

MPTMSFDPQPFRQQYRAAIRPGYNPWLHAGFVLAYGGAWIVFFLSRLEQPSLLEWLTVPAALVFFNWGEYRI
HKSLGHHKHPLGRMFYKRHTGDHHSFFVAGQMRYEQARDWRVILFPAWLVVVFSLGALLAWSLLGLLNDNLA
ALFAATLLLGYLSYEIFHACEHLPPEHPLSRLPWIRHMRRLHELHHRRELMQTHNFNLVFPLMDWCYGTLHW
EAEPAEERAMTRMQHQIEIARGPEATLAYAASPGLWPEWHPSSLRVDGASGPLPAGARFEEDIHAGGRAGHL
SWTVVEYQPGHLWRANARGDRGLHLRLSYECQPSAAGTRFVRTLEYRFDGWSMRLANLFLLRRRIERESEES
MQRLRRVAEARIAVAESV*

AnnotationID:1522 GeneID:1513

AnnotatorUID: diggins

Modification Date/Time: 2005-03-03 09:09:26

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA2122

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:3029

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20175

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1513

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2700 PA2122_tr translation of PA2122 378 98.41 98.94 0 2031.0

85058 gb|AAG05510.1|AE004639_8 (AE004639) hypothetical protein PA2122 [Pseudomonas aeruginosa PAO1] 378 98.41 98.94 0 2031.0

GC ORFID: `44515`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2122`	Glimmer Score:
Start: `1644517`	Stop: `1645653`
Length: `1137`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2122 translation of PA2122`	Homolog Bit Score `786.0`
Other Homologs: `t_PA2122 (ORF: GLIMMER)`
GC ORF Sequence
ATGCCGACCATGTCCTTCGATCCCCAACCCTTTCGCCAGCAGTACCGCGCGGCCATCCGGCCCGGCTACAAC CCCTGGCTGCACGCCGGCTTCGTCCTCGCCTACGGCGGCGCCTGGATCGTCTTCTTCCTCTCCCGGCTCGAG CAGCCGAGCCTGCTGGAATGGCTGACGGTGCCGGCCGCGCTGGTGTTCTTCAACTGGGGCGAGTACCGCATC CACAAGTCCCTCGGCCACCACAAGCACCCGCTGGGGCGGATGTTCTACAAGCGCCATACCGGCGACCACCAC AGCTTCTTCGTCGCCGGCCAGATGCGCTACGAACAGGCACGCGACTGGCGGGTGATCCTGTTCCCGGCCTGG CTGGTGGTGGTcTTCAGCCTCGGCGCGCTGCTCGCCTGGAGCCTGCTCGGCCTGCTGAACGACAACCTCGCC GCGCTGTTCGCCGCGACCCTGCTGCTGGGCTACCTCAGCTACGAGATCTTCCACGCCTGCGAACACCTGCCG CCGGAGCATCCGCTCAGCCGCCTGCCGTGGATCCGCCACATGCGCCGCCTGCACGAACTGCATCACCGTCGC GAGCTGATGCAGACGCACAACTTCAACCTGGTCTTCCCGTTGATGGACTGGTGCTACGGCACCCTCCACTGG GAAGCGGAACCCGCCGAGGAGCGCGCCATGACCCGCATGCAGCACCAGATCGAGATCGCCCGCGGGCCCGAG GCGACCCTCGCCTACGCCGCCAGCCCGGGGCTCTGGCCGGAATGGCATCCCTCGTCGTTACGGGTCGACGGC GCCTCGGGCCCGCTGCCGGCCGGCGCGCGCTTCGAGGAGGACATCCACGCCGGCGGCCGCGCCGGGCACCTG TCCTGGACGGTGGTCGAGTACCAGCCGGGACACCTGTGGCGCGCCAACGCCCGTGGCGACCGGGGGCTGCAC CTGCGCCTGAGCTACGAATGCCAGCCGAGCGCGGCCGGCACCCGCTTCGTGCGCACCCTGGAATACCGCTTC GATGGCTGGTCGATGCGCCTGGCCAACCTGTTCCTGCTGCGCCGTCGCATCGAACGCGAGTCGGAGGAGTCC ATGCAGCGCCTGCGCCGGGTCGCCGAGGCGCGGATAGCGGTGGCGGAAAGCGTATGA