ViewGene

Locus Name:
GeneID:
Location:

GeneID:1512
TrivialName: PA14_23930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23930
PAO1 Ortholog Locus:PA3107
Sequence Length:1212
Protein Length:403
Start: 2079898
Stop: 2081109
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06495.1|AE004735_2 (AE004735) o-succinylhomoserine sulfhydrylase [Pseudomonas aeruginosa PAO1]
Identities = 399/403 (99%), Positives = 399/403 (99%)
Sequence:
ATGACTCAGGACTGGGATGCCGGGCGTCTCGACAGCGACCTGGAAGGCGCGGCCTTCGACACCCTGGCGGTT
CGCGCCGGGCAACGGCGGACGCCGGAGGGCGAGCACGGCGAGGCGCTGTTCACCACTTCCAGCTACGTCTTC
CGCACCGCCGCCGACGCGGCCGCGCGGTTCGCCGGCGAAGTGCCGGGCAACGTCTATTCGCGCTACACCAAC
CCCACGGTACGCACCTTCGAGGAGCGCATCGCCGCCCTCGAAGGAGCCGAGCAGGCGGTGGCCACGGCGTCG
GGCATGTCGGCGATCCTCGCCCTGGTGATGAGCCTGTGCAGCTCCGGCGACCACGTGCTGGTCTCGCGCAGC
GTGTTCGGCTCGACCATCAGCCTGTTCGACAAGTACTTCAAGCGCTTCGGTATCCAGGTCGACTATCCGCCG
TTGAGCGATCTCGCGGCCTGGGAGGCGGCGTGCAAGCCGAATACCAAGCTGTTCTTCGTCGAGTCGCCATCC
AACCCGCTGGCCGAGCTGGTGGATATCGCCGCGCTGGCCGAGATCGCCCACGACAAGGGTGCGCTGCTGGCG
GTGGACAACTGCTTCTGCACGCCGGCCCTGCAACAGCCGCTGAAGCTCGGTGCGGACGTGGTGATCCACTCC
GCGACCAAGTACATCGACGGCCAGGGCCGGGGCATGGGCGGGGTGGTTGCCGGTCGCGGCGAGCAGATGAAG
GAAGTGGTCGGCTTTCTCCGCACCGCCGGACCGACCCTCAGCCCGTTCAACGCCTGGCTGTTCCTCAAGGGC
CTGGAAACCCTGCGTATCCGCATGCAGGCGCACAGCGCCAGTGCCCTGGCCCTGGCCGAATGGCTGGAGCAC
CAGCCGGGCATCGAGCGGGTCTACTACACGGGCCTGCAGAGCCATCCTCAGCATGAGTTGGCCCGGCGCCAG
CAGAGTGGCTTCGGCGCGGTCGTCAGCTTCGACGTGAAGGGCGGGCGCGATGCCGCCTGGCGCTTCATCGAC
GCCACCCGGATGGTCTCGATCACCACCAACCTGGGCGACACCAAGACCACCATCGCCCACCCGGCGACCACC
TCCCACGGTCGGCTGTCCCCCGAGGACCGCGCGCGCGCCGGGATCGGCGACAGCCTGATCCGGGTCGCGGTC
GGCCTGGAAGACCTCGACGACCTCAAGGCCGACATGGCCCGGGGGCTGGCCGCGCTGTGA
Translation:
MTQDWDAGRLDSDLEGAAFDTLAVRAGQRRTPEGEHGEALFTTSSYVFRTAADAAARFAGEVPGNVYSRYTN
PTVRTFEERIAALEGAEQAVATASGMSAILALVMSLCSSGDHVLVSRSVFGSTISLFDKYFKRFGIQVDYPP
LSDLAAWEAACKPNTKLFFVESPSNPLAELVDIAALAEIAHDKGALLAVDNCFCTPALQQPLKLGADVVIHS
ATKYIDGQGRGMGGVVAGRGEQMKEVVGFLRTAGPTLSPFNAWLFLKGLETLRIRMQAHSASALALAEWLEH
QPGIERVYYTGLQSHPQHELARRQQSGFGAVVSFDVKGGRDAAWRFIDATRMVSITTNLGDTKTTIAHPATT
SHGRLSPEDRARAGIGDSLIRVAVGLEDLDDLKADMARGLAAL*
AnnotationID:1521GeneID:1512
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 06:06:13
Gene Name:metZ
Confidence Code:1
GeneProduct:o-succinylhomoserine sulfhydrylase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01053,COG0626,COG2873
Secondary Functional Category(ies):
EC Number:2.5.1.-
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57279.1| (AE016869) O-succinylhomoserine sulfhydrylase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 403

 Score =  684 bits (1765), Expect = 0.0
 Identities = 336/403 (83%), Positives = 372/403 (92%)

>emb|CAB85033.1| (AL162757) O-succinylhomoserine sulfhydrolase [Neisseria
           meningitidis Z2491]
          Length = 389

 Score =  377 bits (969), Expect = e-104
 Identities = 190/381 (49%), Positives = 260/381 (68%), Gaps = 1/381 (0%)

Structural Features:
pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme.
CD-Length = 384 residues, 100.0% aligned
Score =  494 bits (1273), Expect = 9e-141
Identities = 197/387 (50%), Positives = 265/387 (68%), Gaps = 8/387 (2%)

COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases 
[Amino acid transport and metabolism]
CD-Length = 396 residues,  98.0% aligned
Score =  459 bits (1182), Expect = 3e-130
Identities = 177/389 (45%), Positives = 256/389 (65%), Gaps = 5/389 (1%)

COG2873, MET17, O-acetylhomoserine sulfhydrylase 
[Amino acid transport and metabolism]
CD-Length = 426 residues,  98.1% aligned
Score =  417 bits (1073), Expect = 1e-117
Identities = 182/418 (43%), Positives = 252/418 (60%), Gaps = 34/418 (8%)
Genomic Context:
Comment:
ReferenceID:3027
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20173
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32417
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1512_cdd.html
URL:
ReferenceID:33480
Author/Investigator(s): Foglino M, Borne F, Bally M, Ball G, Patte JC.
Title: A direct sulfhydrylation pathway is used for methionine biosynthesis in Pseudomonas aeruginosa.
PubMed: 7704274
MedLine:
Source:
Microbiology. 1995 Feb;141 ( Pt 2):431-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7704274
Homologs By Global Alignment
Gene ID:1512

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2698 PA3107_tr translation of PA3107 403 99.00 99.00 0 2033.0
84989 gb|AAG06495.1|AE004735_2 (AE004735) o-succinylhomoserine sulfhydrylase [Pseudomonas aeruginosa PAO1] 403 99.00 99.00 0 2033.0
84990 gb|AAA83435.1| (U10904) O-succinylhomoserine sulfhydrylase [Pseudomonas aeruginosa] 403 99.00 99.00 0 2033.0
84991 gb|AAO57279.1| (AE016869) O-succinylhomoserine sulfhydrylase [Pseudomonas syringae pv. tomato str. DC3000] 403 83.37 92.30 0 1765.0
84992 gb|AAC83351.1| (AF092918) MetZ homolog [Pseudomonas alcaligenes] 403 83.12 90.81 12 1740.0
GC ORFID: 44514How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3107Glimmer Score:
Start: 2874033Stop: 2872822
Length: 1212
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3107 translation of PA3107Homolog Bit Score 787.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene5954 (ORF: BLASTX 317.0), t_PA0400 (ORF: BLASTX 298.0), t_PA3107 (ORF: GLIMMER)
GC ORF Sequence
ATGACTCAGGACTGGGATGCCGGGCGTCTCGACAGCGACCTGGAAGGCGCGGCCTTCGACACCCTGGCGGTT
CGCGCCGGGCAACGGCGGACGCCGGAGGGCGAGCACGGCGAGGCGCTGTTCACCACTTCCAGCTACGTCTTC
CGCACCGCCGCCGACGCGGCCGCGCGGTTCGCCGGCGAAGTGCCGGGCAACGTCTATTCGCGCTACACCAAC
CCCACGGTACGCACCTTCGAGGAGCGCATCGCCGCCCTCGAAGGAGCCGAGCAGGCGGTGGCCACGGCGTCG
GGCATGTCGGCGATCCTCGCCCTGGTGATGAGCCTGTGCAGCTCCGGCGACCACGTGCTGGTCTCGCGCAGC
GTGTTCGGCTCGACCATCAGCCTGTTCGACAAGTACTTCAAGCGCTTCGGTATCCAGGTCGACTATCCGCCG
TTGAGCGATCTCGCGGCCTGGGAGGCGGCGTGCAAGCCGAATACCAAGCTGTTCTTCGTCGAGTCGCCATCC
AACCCGCTGGCCGAGCTGGTGGATATCGCCGCGCTGGCCGAGATCGCCCACGACAAGGGTGCGCTGCTGGCG
GTGGACAACTGCTTCTGCACGCCGGCCCTGCAACAGCCGCTGAAGCTCGGTGCGGACGTGGTGATCCACTCC
GCGACCAAGTACATCGACGGCCAGGGCCGGGGCATGGGCGGGGTGGTTGCCGGTCGCGGCGAGCAGATGAAG
GAAGTGGTCGGCTTTCTCCGCACCGCCGGACCGACCCTCAGCCCGTTCAACGCCTGGCTGTTCCTCAAGGGC
CTGGAAACCCTGCGTATCCGCATGCAGGCGCACAGCGCCAGTGCCCTGGCCCTGGCCGAATGGCTGGAGCAC
CAGCCGGGCATCGAGCGGGTCTACTACACGGGCCTGCAGAGCCATCCTCAGCATGAGTTGGCCCGGCGCCAG
CAGAGTGGCTTCGGCGCGGTCGTCAGCTTCGACGTGAAGGGCGGGCGCGATGCCGCCTGGCGCTTCATCGAC
GCCACCCGGATGGTCTCGATCACCACCAACCTGGGCGACACCAAGACCACCATCGCCCACCCGGCGACCACC
TCCCACGGTCGGCTGTCCCCCGAGGACCGCGCGCGCGCCGGGATCGGCGACAGCCTGATCCGGGTCGCGGTC
GGCCTGGAAGACCTCGACGACCTCAAGGCCGACATGGCCCGGGGGCTGGCCGCGCTGTGA