ViewGene
Locus Name:
GeneID:
Location:

GeneID:1511
TrivialName: PA14_30100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30100
PAO1 Ortholog Locus:PA2630
Sequence Length:1170
Protein Length:389
Start: 2607780
Stop: 2606611
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06018.1|AE004691_9 (AE004691) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 387/389 (99%), Positives = 388/389 (99%)
Sequence:
ATGAATGCTGATACTCCCCTGCAACTTCTGGGCGGACTGACCGCTGCCGAATTCCTCCGCGACTACTGGCAG
CGCAAACCGCTGCTGGTCCGCCAGGCGATCCCGGACTTCGAAAGCCCGCTGTCCGCCGACGAGCTGGCCGGG
CTGTCGCTGGAGGAATCGGTGGAATCGCGCATCGTCCTCGAACACGGGAAAACCCCGTGGGAAATGCGCCGT
GGCCCGTTCCAGGAGGAGGACTACCAGCACCTGCCGGAACAGGACTGGACCCTGCTGGTGCAGGCGGTCGAC
CAGTTCGTCCCGGAAGTCGCCCAACTGCTGGAGCAATTCCGCTTCCTGCCCAGCTGGCGGATCGACGACGTG
ATGATCAGCTACGCCGCTCCCGGCGGCGGCGTCGGTCCGCACTTCGACAACTACGACGTATTCCTGCTTCAG
GGCCACGGACGCCGGCGCTGGAAAGTCGGACAGATGTGCAGCAGCGACAGCCCGCTGCGCGAGCACGCCGAC
CTGCGCATCCTCGCCGACTTCGAACAGAGCGACGAGTGGGTCCTGGAGCCCGGCGACATGCTCTACCTGCCC
CCGCGCCTCGCCCACTACGGCATTGCCGAAGACGAGTGCATGACCTACTCGATCGGCTTCCGCGCGCCCAGC
GCCGCCGAAGTGCTGACCCATTTCACCGACTTCCTCGGCCAGTTCCTCTCCGACGAGGAGCGCTACACCGAT
GCCGGCCTGCAACCGGTAGGCGACGATCCGCACCAGATCCAGCGCGACGCTCTGGAGCGCCTGCAGGGTCTG
ATCCAGGAGCACATGAGCGACGAGCGCCTGCTGCTGACCTGGTTCGGCCAGTTCATGACCGAGCCGCGCTAT
CCTGAACTGGTTGCCGGCGAGGATATCCCCGAAGAGGAGCTATTCGGCGCCCTCGAGGATGGCGCGCTGCTG
GTGCGCAACCCCAGCGCCCGCCTGGCCTGGAGCGAGATCGACATCGGCCTGGTGCTGTTCGCCAGCGGCCAG
AGCGTACTCCTGCCCGACCAGCTCAAGGAACTGCTGAAGCTGGTCTGCTCGGCCGATGCGTTGCATCTGGAA
AACCTCGGCCAATGGCTGGCCGACGACGATGCGCGTAAGCTGTTGGCGGAGTTGGTCAAACAGGGCAGTTTG
GAGTTTGCAGATGAATAA
Translation:
MNADTPLQLLGGLTAAEFLRDYWQRKPLLVRQAIPDFESPLSADELAGLSLEESVESRIVLEHGKTPWEMRR
GPFQEEDYQHLPEQDWTLLVQAVDQFVPEVAQLLEQFRFLPSWRIDDVMISYAAPGGGVGPHFDNYDVFLLQ
GHGRRRWKVGQMCSSDSPLREHADLRILADFEQSDEWVLEPGDMLYLPPRLAHYGIAEDECMTYSIGFRAPS
AAEVLTHFTDFLGQFLSDEERYTDAGLQPVGDDPHQIQRDALERLQGLIQEHMSDERLLLTWFGQFMTEPRY
PELVAGEDIPEEELFGALEDGALLVRNPSARLAWSEIDIGLVLFASGQSVLLPDQLKELLKLVCSADALHLE
NLGQWLADDDARKLLAELVKQGSLEFADE*
AnnotationID:1520GeneID:1511
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 14:02:58
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2630
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL20158.1| (AE008753) putative cytoplasmic protein [Salmonella typhimurium
           LT2]
          Length = 373

 Score =  253 bits (645), Expect = 2e-66
 Identities = 140/368 (38%), Positives = 216/368 (58%), Gaps = 13/368 (3%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3025




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20171




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33201




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1511_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1511
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2697
                           PA2630_tr
                           translation of PA2630
                           389
                           99.48
                           99.74
                           0
                           2033.0
     

     
     
84977
                           gb|AAG06018.1|AE004691_9
                           (AE004691) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           389
                           99.48
                           99.74
                           0
                           2033.0
     

     
     
84978
                           gb|AAO56839.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           389
                           76.09
                           88.43
                           1
                           1636.0
     

     
     
84979
                           gb|AAN69611.1|AE016594_8
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           391
                           75.70
                           86.95
                           3
                           1618.0
     

     
     
84986
                           emb|CAE41856.1|
                           (BX640415) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           417
                           40.52
                           53.47
                           50
                           652.0
     

     






      

          
GC ORFID: 44513How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2630Glimmer Score: 

          
Start: 2346146Stop: 2347315

          
Length: 1170


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2630 translation of PA2630Homolog Bit Score 787.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2759 (ORF: BLASTX 632.0), t_PA2630 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGCTGATACTCCCCTGCAACTTCTGGGCGGACTGACCGCTGCCGAATTCCTCCGCGACTACTGGCAG 
CGCAAACCGCTGCTGGTCCGCCAGGCGATCCCGGACTTCGAAAGCCCGCTGTCCGCCGACGAGCTGGCCGGG 
CTGTCGCTGGAGGAATCGGTGGAATCGCGCATCGTCCTCGAACACGGGAAAACCCCGTGGGAAATGCGCCGT 
GGCCCGTTCCAGGAGGAGGACTACCAGCACCTGCCGGAACAGGACTGGACCCTGCTGGTGCAGGCGGTCGAC 
CAGTTCGTCCCGGAAGTCGCCCAACTGCTGGAGCAATTCCGCTTCCTGCCCAGCTGGCGGATCGACGACGTG 
ATGATCAGCTACGCCGCTCCCGGCGGCGGCGTCGGTCCGCACTTCGACAACTACGACGTATTCCTGCTTCAG 
GGCCACGGACGCCGGCGCTGGAAAGTCGGACAGATGTGCAGCAGCGACAGCCCGCTGCGCGAGCACGCCGAC 
CTGCGCATCCTCGCCGACTTCGAACAGAGCGACGAGTGGGTCCTGGAGCCCGGCGACATGCTCTACCTGCCC 
CCGCGCCTCGCCCACTACGGCATTGCCGAAGACGAGTGCATGACCTACTCGATCGGCTTCCGCGCGCCCAGC 
GCCGCCGAAGTGCTGACCCATTTCACCGACTTCCTCGGCCAGTTCCTCTCCGACGAGGAGCGCTACACCGAT 
GCCGGCCTGCAACCGGTAGGCGACGATCCGCACCAGATCCAGCGCGACGCTCTGGAGCGCCTGCAGGGTCTG 
ATCCAGGAGCACATGAGCGACGAGCGCCTGCTGCTGACCTGGTTCGGCCAGTTCATGACCGAGCCGCGCTAT 
CCTGAACTGGTTGCCGGCGAGGATATCCCCGAAGAGGAGCTATTCGGCGCCCTCGAGGATGGCGCGCTGCTG 
GTGCGCAACCCCAGCGCCCGCCTGGCCTGGAGCGAGATCGACATCGGCCTGGTGCTGTTCGCCAGCGGCCAG 
AGCGTACTCCTGCCCGACCAGCTCAAGGAACTGCTGAAGCTGGTCTGCTCGGCCGATGCGTTGCATCTGGAA 
AACCTCGGCCAATGGCTGGCCGACGACGATGCGCGTAAGCTGTTGGCGGAGTTGGTCAAACAGGGCAGTTTG 
GAGTTTGCAGATGAATAA