ViewGene
Locus Name:
GeneID:
Location:

GeneID:1510
TrivialName: PA14_40570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40570
PAO1 Ortholog Locus:PA1851
Sequence Length:1206
Protein Length:401
Start: 3623677
Stop: 3622472
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05240.1|AE004611_5 (AE004611) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 397/401 (99%), Positives = 399/401 (99%)
Sequence:
ATGCTTGCACGCGACGGCCTGGTACAGGCTGGTCTGCCGGATAATCCGTATGCGCGCCAGTTGCGCAACGGT
TTTCGTTGGTTGCGGTTCGAAAAGGAGCTGGAAAACGAGTTTCGCGAGTTTCTCAGTTGGAACTCGCTGATG
CAGCGGCGTGCTGCCATCGGGGTAGCGTTCCTGATCTGGACGCTGTTCATCGTGGCCGACTGGTTGATGGTG
GACATCCGCCTGCATCCCAACCTGTTCGAGCAACTGCTGGGCGTGCGCCTGGGAATGATCGGCCTGCTGCTG
GTGGTCTGGCCGGCGGCCTTCCTGCCCAGCCTGCGCAAGGTCGGCGATGCCATCGCGCCCTACTGCCTGCTG
CTGATCAACCTGGCGGTGCTGGCCTGCGACGTGCTGTTCGAGTGGCATGGGGTGCCGCGCTTCACCCAACTG
GGCGCGACCCTGGGCATCCTCGCGGTGTTCTTCCCACTCGGCCTGGCGTTCTGGGCCTGCGTGCGCCTGGCG
TTGCTGTGCCTGGCCCTGAACCTGGCGGTATTCCTGCTCTTCGGCGGCGAAGAGAACCTGCGCACCAACCTG
CTGAATACGCTCTACAACGGCCTGGTGGTGCTGATCTGTTCGTTCGCCCTGTACCTGCAGGACTACGCCCAG
CGCGAGCAGTTCCTCGGCCGGCGGCTGCTGGGCATGATGGCCGAACAGGACAGCCTCACCGGCCTGGTCAAC
CGACGCTACTACGAGCTGCTCGCCCAGCGGGCCCTGGAGCAGGGCGCCCGCGAAGAAAAGGGGGTGGCGCTG
ATCCTGGTGGATGTCGACGACTTCAAGGCCTACAACGACCACTACGGGCATCCGGCCGGCGATGCCGCCCTG
CGCCAGCTTGGCGTCGTGCTCCGGCAGGGCGCGCGGCGGCCGTTGGATATCGCCGCGCGCCTGGGCGGGGAG
GAGTTCGCCGTGTTGCTCTACGACAGCGAGGAGGGCAACACCCTGGCCATCGCCGAGCGCCTGCGGCAGGCG
GTGGAGGCGCTGGGCATCGAGCACCTGGGCTCCAGCGCCGGCCCCTGCCTGACCATCAGCCTGGGGGTGGCC
TATTCGACCTCCGGCATGGGCCTGGACGCGCTCTATCGCGAGGCCGATCGCGCGCTCTACGAGGCCAAGGAT
GCAGGGCGCAACGCGGTGCGCGTGGCGTTCCGTCAGCACGACCGCCTCGAATAG
Translation:
MLARDGLVQAGLPDNPYARQLRNGFRWLRFEKELENEFREFLSWNSLMQRRAAIGVAFLIWTLFIVADWLMV
DIRLHPNLFEQLLGVRLGMIGLLLVVWPAAFLPSLRKVGDAIAPYCLLLINLAVLACDVLFEWHGVPRFTQL
GATLGILAVFFPLGLAFWACVRLALLCLALNLAVFLLFGGEENLRTNLLNTLYNGLVVLICSFALYLQDYAQ
REQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRALEQGAREEKGVALILVDVDDFKAYNDHYGHPAGDAAL
RQLGVVLRQGARRPLDIAARLGGEEFAVLLYDSEEGNTLAIAERLRQAVEALGIEHLGSSAGPCLTISLGVA
YSTSGMGLDALYREADRALYEAKDAGRNAVRVAFRQHDRLE*
AnnotationID:1519GeneID:1510
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 05:05:29
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA1851
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67116.1|AE016340_7 (AE016779) response regulator/GGDEF domain protein [Pseudomonas
           putida KT2440]
          Length = 335

 Score =  140 bits (353), Expect = 1e-32
 Identities = 74/181 (40%), Positives = 109/181 (60%), Gaps = 2/181 (1%)

>gb|AAO55020.1| (AE016861) response regulator/GGDEF domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 334

 Score =  135 bits (340), Expect = 4e-31
 Identities = 73/177 (41%), Positives = 109/177 (61%), Gaps = 3/177 (1%)

>gb|AAN49727.1|AE011420_2 (AE011420) probable two-component response regulator with GGDEF
           domain [Leptospira interrogans serovar lai str. 56601]
          Length = 330

 Score =  135 bits (339), Expect = 6e-31
 Identities = 68/165 (41%), Positives = 102/165 (61%), Gaps = 2/165 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3023




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20169




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37062




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1510_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1510
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2690
                           PA1851_tr
                           translation of PA1851
                           401
                           99.00
                           99.50
                           0
                           2032.0
     

     
     
84903
                           gb|AAG05240.1|AE004611_5
                           (AE004611) hypothetical protein PA1851 [Pseudomonas aeruginosa PAO1]
                           401
                           99.00
                           99.50
                           0
                           2032.0
     

     
     
2691
                           PA3343_tr
                           translation of PA3343
                           417
                           40.76
                           52.51
                           44
                           608.0
     

     
     
84904
                           gb|AAG06731.1|AE004756_9
                           (AE004756) hypothetical protein PA3343 [Pseudomonas aeruginosa PAO1]
                           417
                           40.76
                           52.51
                           44
                           608.0
     

     
     
84967
                           gb|AAQ58065.2|
                           (AE016911) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           416
                           29.08
                           39.42
                           97
                           250.0
     

     






      

          
GC ORFID: 44512How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1851Glimmer Score: 

          
Start: 1330233Stop: 1331438

          
Length: 1206


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1851 translation of PA1851Homolog Bit Score 787.0

          
Other Homologs:  t_PA3343 (ORF: BLASTX 233.0), psyr_15may02_Scaffold3_revised_gene4587 (ORF: BLASTX 140.0), t_PA3177 (ORF: BLASTX 115.0), t_PA1851 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTGCACGCGACGGCCTGGTACAGGCTGGTCTGCCGGATAATCCGTATGCGCGCCAGTTGCGCAACGGT 
TTTCGTTGGTTGCGGTTCGAAAAGGAGCTGGAAAACGAGTTTCGCGAGTTTCTCAGTTGGAACTCGCTGATG 
CAGCGGCGTGCTGCCATCGGGGTAGCGTTCCTGATCTGGACGCTGTTCATCGTGGCCGACTGGTTGATGGTG 
GACATCCGCCTGCATCCCAACCTGTTCGAGCAACTGCTGGGCGTGCGCCTGGGAATGATCGGCCTGCTGCTG 
GTGGTCTGGCCGGCGGCCTTCCTGCCCAGCCTGCGCAAGGTCGGCGATGCCATCGCGCCCTACTGCCTGCTG 
CTGATCAACCTGGCGGTGCTGGCCTGCGACGTGCTGTTCGAGTGGCATGGGGTGCCGCGCTTCACCCAACTG 
GGCGCGACCCTGGGCATCCTCGCGGTGTTCTTCCCACTCGGCCTGGCGTTCTGGGCCTGCGTGCGCCTGGCG 
TTGCTGTGCCTGGCCCTGAACCTGGCGGTATTCCTGCTCTTCGGCGGCGAAGAGAACCTGCGCACCAACCTG 
CTGAATACGCTCTACAACGGCCTGGTGGTGCTGATCTGTTCGTTCGCCCTGTACCTGCAGGACTACGCCCAG 
CGCGAGCAGTTCCTCGGCCGGCGGCTGCTGGGCATGATGGCCGAACAGGACAGCCTCACCGGCCTGGTCAAC 
CGACGCTACTACGAGCTGCTCGCCCAGCGGGCCCTGGAGCAGGGCGCCCGCGAAGAAAAGGGGGTGGCGCTG 
ATCCTGGTGGATGTCGACGACTTCAAGGCCTACAACGACCACTACGGGCATCCGGCCGGCGATGCCGCCCTG 
CGCCAGCTTGGCGTCGTGCTCCGGCAGGGCGCGCGGCGGCCGTTGGATATCGCCGCGCGCCTGGGCGGGGAG 
GAGTTCGCCGTGTTGCTCTACGACAGCGAGGAGGGCAACACCCTGGCCATCGCCGAGCGCCTGCGGCAGGCG 
GTGGAGGCGCTGGGCATCGAGCACCTGGGCTCCAGCGCCGGCCCCTGCCTGACCATCAGCCTGGGGGTGGCC 
TATTCGACCTCCGGCATGGGCCTGGACGCGCTCTATCGCGAGGCCGATCGCGCGCTCTACGAGGCCAAGGAT 
GCAGGGCGCAACGCGGTGCGCGTGGCGTTCCGTCAGCACGACCGCCTCGAATAG