ViewGene
Locus Name:
GeneID:
Location:

GeneID:151
TrivialName: PA14_37690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37690
PAO1 Ortholog Locus:PA2072
Sequence Length:2595
Protein Length:864
Start: 3359460
Stop: 3356866
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05460.1|AE004634_3 (AE004634) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 848/864 (98%), Positives = 850/864 (98%)
Sequence:
ATGCTTGCTTCAGCGATTGCCAGCGGTACCGCAGTCTCCCAGGTCTCCAAGCATCTCCTAATGTTCCTGGCC
GCCCTTTTCCTCGCCCTCGGTGCATGCGGCTGGGCGATCCTGCACATCGCCAGGCAGCAGGACGACATCGCC
ATCGAGCAGAGCCATTTCTACGTGGAAAAGGCGCTGCAGAATCGCCGGGAAAATTCCGAGCAGTTCTCCACC
ACCTATTCGTTCTGGACCGACGCCTACGTCTATCTGGGAAACCGGGTCGACGTGGACTGGGCCTTTACCAAG
AACAACCTCGGCTCGGTGCTCTACACCACCAACGGCTACGACGGCGTCTTCGTCATCGACGACCGTGGCACT
CGCTACGCCATGCTCGAGGGCGAGCTGTCCGAGCGCTCGCTGGCCGACTCGCTGGGCGCCGATGCCGGAGAC
ATCCTCAGCGCCGCCCGCCGCGCCGCGGTGGACGAGGCGGCGATCAGCCGCTACGTCGACTTCGACGGCGCA
CCGGCGATCCTGGTCGCCTCGGCGATCAAGCCCACCAGCGATCATGCGCCCATCGACCTGGACAAGGCCTCG
GTGATGGTCTTCGTCGACCGGCTGACCCCGGCGAAGCTGGCCAAGCTCGGCGGCGACTACGGCATCGCCAAC
CTGCACCTGTTGGTCGGCGGCGCGGCGGGCGACAAGGAAAGCCTGGCCCTGGAGGACACTCCCCATCGCCTG
GCCTGGGTGTCGTCGCGTCCGGGTAGCGCCATGCTGCGGGAGACCGCGTTGCCGCTGCTGGGGATCTTCGTG
CTCGCCGCCGGGCTGCTGTTCTGGCTGAGCCGCAGCGCCGTGCTCAACGCCCGCGCGGTAGATCGCCAGCAG
AAGGTCCTGAAACGCAGCAACCAGGCCCTGCTGGCCAGCGAGGAACGTTTCAAGTCGATAGCCGAGGCGGCC
TCGGACTGGATCTGGGAAGTCGACGGGCATTTCGTCTTCACCTATCTCTCCGTGCGCTTCCGCGACGTCACC
GGCTACCAGCCGGAGGCCTGGATCGGGCGGCGGCTGGACGAGTTGCTGGATAGCGATACGGTGAACATCGTC
AAGTGGCTGGAAGGGCTGCCCGACGCCGAGACGCCGTCCAGCCTGGTCTGCGCTTTCCGCGACAGCCAGGGC
CAGGCGCGGGTCGGCAAGCTGAGCGCCAGCGCGATCCGCAACGGCGTCGCCAGCGGCTATCGCGGCACGGCG
GCCGATATCACCGACGAGGTCGAAGCCCATGCGAAGATCCAGCATCTGTCCCTGCACGATGCCCTGACCGGC
CTGCCGAACCGCAACAAGCTGTTCCAGTTCCTCGAACGCCTGCTGGCGGAAAAGGCTGGCAAGTCGCCGGTA
GCGGTACTGATGCTCGACCTCGACCGCTTCAAGCCGATCAACGACCAGCACGGCCATCCTGCCGGCGACGCG
GTGCTCTACGCCATCGCCGAGCGGCTGCGCGCCTCGACCCGCGACCAGGACATGGTTGCCCGGCTCGGCGGC
GACGAGTTCGTGGTGGTCAGTACCCACGTGTCGTCGAAGCTGGAAACCGAGAAGTTCTGTAGCCGGCTGATC
GACGTGATCAACCGCGAGATCGCCTACGAAGGGCACAGCTTCCATGTCGGCGCCAGCATCGGCGTGGCCCTG
GCGCCGGAGCACGGCGGCGATCCGCGCGGCCTGCTGCGTTGCGCCGACGTGGCGATGTACGAGGCCAAGGCC
GCGGGGCGCAATACCTGGCGTTTCTACTTGGAAGCGATGGACTCCCATCTCGCCGAGAAGAAGCTGCGCGAG
ACCGAGTTGCGCGCCGCCTTGCAGAACGGCGAGTTCGAGTTGTACTACCAGCCGCGCTTCCTGGCGCAGGAA
CAGACGATCGCCTCGGCGGAGGCGCTGATCCGCTGGAACCATCCGCGCCGCGGGCTGATCGGCCCGGACGAG
TTCATCGGCCTGGCGGAAGAAAGCGACCTGATCGTGCAGATCGGCAACTGGGTGCTGCGCGAGGCCTGCGCC
ACCGCCGCCTCCTGGCCGGGCGAGGTGATGGTCTCGGTGAACGTGTCGCCGGCGCAGTTCATGACCGGCGAT
ATCGTCTGGCAGGTGCGCGAGGCGTTGCGCCTGGCCCACCTGGATGCCCGCCGGCTGGAGCTGGAGGTCACC
GAGAACGTCATGCTCAACGATGTCGACGGCGCGCTGCGGACCATGACGGCCCTCAAGGAACTGGGCGTCCGC
CTCAACATGGACGACTTCGGTACCGGCTATTCCTCGCTCGGCTACCTGCGCACCTATCCCTTCGACAGCATC
AAGATCGACAAGCGCTTCGTCGCCAGCATGGAGAAGACCGGGCGCGACCGTTCGATCGTGCAGGCCATCATC
AATCTCGGCAACGCCCTGAACCTGCGGGTCACCGCCGAGGGGGTGGAGACCGAAGGGCAGATGCATATCCTG
CGCGACGAGCAATGCCACGAACTGCAAGGATTCCTGCTCAGCCGGCCGCTGGATGCGCAGGGCCTGCGCGAC
CTGCTGGCGCGCGAGGCGGGGCAGACCCAGGCGCCACAGGTTTCCGCCGAAGGCCATGCTGCGCGCCGGCCT
TGA
Translation:
MLASAIASGTAVSQVSKHLLMFLAALFLALGACGWAILHIARQQDDIAIEQSHFYVEKALQNRRENSEQFST
TYSFWTDAYVYLGNRVDVDWAFTKNNLGSVLYTTNGYDGVFVIDDRGTRYAMLEGELSERSLADSLGADAGD
ILSAARRAAVDEAAISRYVDFDGAPAILVASAIKPTSDHAPIDLDKASVMVFVDRLTPAKLAKLGGDYGIAN
LHLLVGGAAGDKESLALEDTPHRLAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQ
KVLKRSNQALLASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLDELLDSDTVNIV
KWLEGLPDAETPSSLVCAFRDSQGQARVGKLSASAIRNGVASGYRGTAADITDEVEAHAKIQHLSLHDALTG
LPNRNKLFQFLERLLAEKAGKSPVAVLMLDLDRFKPINDQHGHPAGDAVLYAIAERLRASTRDQDMVARLGG
DEFVVVSTHVSSKLETEKFCSRLIDVINREIAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKA
AGRNTWRFYLEAMDSHLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPRRGLIGPDE
FIGLAEESDLIVQIGNWVLREACATAASWPGEVMVSVNVSPAQFMTGDIVWQVREALRLAHLDARRLELEVT
ENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFDSIKIDKRFVASMEKTGRDRSIVQAII
NLGNALNLRVTAEGVETEGQMHILRDEQCHELQGFLLSRPLDAQGLRDLLAREAGQTQAPQVSAEGHAARRP
*
AnnotationID:161GeneID:151
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:10
Gene Name:
Confidence Code:3
GeneProduct:putative sensory box protein
Cell Localization:()
Synonyms:PA2072
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2200,pfam00563
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66779.1|AE016306_5 (AE016778) sensory box protein [Pseudomonas putida KT2440]
          Length = 861

 Score =  790 bits (2039), Expect = 0.0
 Identities = 415/852 (48%), Positives = 573/852 (67%), Gaps = 7/852 (0%)

>emb|CAC89841.1| (AJ414145) putative membrane protein [Yersinia pestis CO92]
          Length = 788

 Score =  622 bits (1603), Expect = e-177
 Identities = 336/773 (43%), Positives = 479/773 (61%), Gaps = 17/773 (2%)

>gb|AAK22725.1| (AE005749) sensory box/GGDEF family protein [Caulobacter crescentus
           CB15]
          Length = 842

 Score =  409 bits (1052), Expect = e-113
 Identities = 242/589 (41%), Positives = 334/589 (56%), Gaps = 16/589 (2%)








 
Structural Features:
COG2200, Rtn, FOG: EAL domain [Signal transduction mechanisms]
CD-Length = 256 residues,  99.6% aligned
Score =  282 bits (722), Expect = 1e-76
Identities = 123/255 (48%), Positives = 163/255 (63%), Gaps = 2/255 (0%)

pfam00563, EAL, EAL domain.
CD-Length = 247 residues,  99.6% aligned
Score =  279 bits (715), Expect = 1e-75
Identities = 116/246 (47%), Positives = 156/246 (63%), Gaps = 4/246 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:305




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17447




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32634




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:151_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:151
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
272
                           PA2072_tr
                           translation of PA2072
                           864
                           98.14
                           98.37
                           0
                           4311.0
     

     
     
18133
                           gb|AAG05460.1|AE004634_3
                           (AE004634) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           864
                           98.14
                           98.37
                           0
                           4311.0
     

     
     
18134
                           gb|AAN66779.1|AE016306_5
                           (AE016778) sensory box protein [Pseudomonas putida KT2440]
                           885
                           47.79
                           65.76
                           45
                           2055.0
     

     
     
18135
                           gb|AAM86939.1|AE013940_5
                           (AE013940) hypothetical [Yersinia pestis KIM]
                           883
                           38.95
                           55.83
                           114
                           1618.0
     

     
     
18136
                           emb|CAC89841.1|
                           (AJ414145) putative membrane protein [Yersinia pestis CO92]
                           883
                           38.95
                           55.83
                           114
                           1618.0
     

     






      

          
GC ORFID: 43153How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2072Glimmer Score: 

          
Start: 1594454Stop: 1597048

          
Length: 2595


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2072 translation of PA2072Homolog Bit Score 1665.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1407 (ORF: BLASTX 325.0), t_PA2072 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTGCTTCAGCGATTGCCAGCGGTACCGCAGTCTCCCAGGTCTCCAAGCATCTCCTAATGTTCCTGGCC 
GCCCTTTTCCTCGCCCTCGGTGCATGCGGCTGGGCGATCCTGCACATCGCCAGGCAGCAGGACGACATCGCC 
ATCGAGCAGAGCCATTTCTACGTGGAAAAGGCGCTGCAGAATCGCCGGGAAAATTCCGAGCAGTTCTCCACC 
ACCTATTCGTTCTGGACCGACGCCTACGTCTATCTGGGAAACCGGGTCGACGTGGACTGGGCCTTTACCAAG 
AACAACCTCGGCTCGGTGCTCTACACCACCAACGGCTACGACGGCGTCTTCGTCATCGACGACCGTGGCACT 
CGCTACGCCATGCTCGAGGGCGAGCTGTCCGAGCGCTCGCTGGCCGACTCGCTGGGCGCCGATGCCGGAGAC 
ATCCTCAGCGCCGCCCGCCGCGCCGCGGTGGACGAGGCGGCGATCAGCCGCTACGTCGACTTCGACGGCGCA 
CCGGCGATCCTGGTCGCCTCGGCGATCAAGCCCACCAGCGATCATGCGCCCATCGACCTGGACAAGGCCTCG 
GTGATGGTCTTCGTCGACCGGCTGACCCCGGCGAAGCTGGCCAAGCTCGGCGGCGACTACGGCATCGCCAAC 
CTGCACCTGTTGGTCGGCGGCGCGGCGGGCGACAAGGAAAGCCTGGCCCTGGAGGACACTCCCCATCGCCTG 
GCCTGGGTGTCGTCGCGTCCGGGTAGCGCCATGCTGCGGGAGACCGCGTTGCCGCTGCTGGGGATCTTCGTG 
CTCGCCGCCGGGCTGCTGTTCTGGCTGAGCCGCAGCGCCGTGCTCAACGCCCGCGCGGTAGATCGCCAGCAG 
AAGGTCCTGAAACGCAGCAACCAGGCCCTGCTGGCCAGCGAGGAACGTTTCAAGTCGATAGCCGAGGCGGCC 
TCGGACTGGATCTGGGAAGTCGACGGGCATTTCGTCTTCACCTATCTCTCCGTGCGCTTCCGCGACGTCACC 
GGCTACCAGCCGGAGGCCTGGATCGGGCGGCGGCTGGACGAGTTGCTGGATAGCGATACGGTGAACATCGTC 
AAGTGGCTGGAAGGGCTGCCCGACGCCGAGACGCCGTCCAGCCTGGTCTGCGCTTTCCGCGACAGCCAGGGC 
CAGGCGCGGGTCGGCAAGCTGAGCGCCAGCGCGATCCGCAACGGCGTCGCCAGCGGCTATCGCGGCACGGCG 
GCCGATATCACCGACGAGGTCGAAGCCCATGCGAAGATCCAGCATCTGTCCCTGCACGATGCCCTGACCGGC 
CTGCCGAACCGCAACAAGCTGTTCCAGTTCCTCGAACGCCTGCTGGCGGAAAAGGCTGGCAAGTCGCCGGTA 
GCGGTACTGATGCTCGACCTCGACCGCTTCAAGCCGATCAACGACCAGCACGGCCATCCTGCCGGCGACGCG 
GTGCTCTACGCCATCGCCGAGCGGCTGCGCGCCTCGACCCGCGACCAGGACATGGTTGCCCGGCTCGGCGGC 
GACGAGTTCGTGGTGGTCAGTACCCACGTGTCGTCGAAGCTGGAAACCGAGAAGTTCTGTAGCCGGCTGATC 
GACGTGATCAACCGCGAGATCGCCTACGAAGGGCACAGCTTCCATGTCGGCGCCAGCATCGGCGTGGCCCTG 
GCGCCGGAGCACGGCGGCGATCCGCGCGGCCTGCTGCGTTGCGCCGACGTGGCGATGTACGAGGCCAAGGCC 
GCGGGGCGCAATACCTGGCGTTTCTACTTGGAAGCGATGGACTCCCATCTCGCCGAGAAGAAGCTGCGCGAG 
ACCGAGTTGCGCGCCGCCTTGCAGAACGGCGAGTTCGAGTTGTACTACCAGCCGCGCTTCCTGGCGCAGGAA 
CAGACGATCGCCTCGGCGGAGGCGCTGATCCGCTGGAACCATCCGCGCCGCGGGCTGATCGGCCCGGACGAG 
TTCATCGGCCTGGCGGAAGAAAGCGACCTGATCGTGCAGATCGGCAACTGGGTGCTGCGCGAGGCCTGCGCC 
ACCGCCGCCTCCTGGCCGGGCGAGGTGATGGTCTCGGTGAACGTGTCGCCGGCGCAGTTCATGACCGGCGAT 
ATCGTCTGGCAGGTGCGCGAGGCGTTGCGCCTGGCCCACCTGGATGCCCGCCGGCTGGAGCTGGAGGTCACC 
GAGAACGTCATGCTCAACGATGTCGACGGCGCGCTGCGGACCATGACGGCCCTCAAGGAACTGGGCGTCCGC 
CTCAACATGGACGACTTCGGTACCGGCTATTCCTCGCTCGGCTACCTGCGCACCTATCCCTTCGACAGCATC 
AAGATCGACAAGCGCTTCGTCGCCAGCATGGAGAAGACCGGGCGCGACCGTTCGATCGTGCAGGCCATCATC 
AATCTCGGCAACGCCCTGAACCTGCGGGTCACCGCCGAGGGGGTGGAGACCGAAGGGCAGATGCATATCCTG 
CGCGACGAGCAATGCCACGAACTGCAAGGATTCCTGCTCAGCCGGCCGCTGGATGCGCAGGGCCTGCGCGAC 
CTGCTGGCGCGCGAGGCGGGGCAGACCCAGGCGCCACAGGTTTCCGCCGAAGGCCATGCTGCGCGCCGGCCT 
TGA