ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1508

TrivialName: PA14_16100

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_16100

PAO1 Ortholog Locus: PA3734

Sequence Length: 1221

Protein Length: 406

Start: 1372497

Stop: 1371277

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07121.1|AE004792_6 (AE004792) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 396/400 (99%), Positives = 397/400 (99%)

Sequence:

CTGGCGAAAGGCCACGAGCCGGCGCAAATAGCCATTCGAGCTGAGCCAGGCCAACGCAACGATCAGCCCGCT
ATAAGGAAAGCACCGGGAAAAACTCCAACCATCCCACCCTCGCGCAACGCCTTCACCTGCTTGAAATTGCAG
TATCCGGCGCGTCCGTCAGGCAGTAACAACGAGACTTCCCCCTGCGTGTCGAACAGCGAGGATCTCATGACT
GCCTTCGCATCCCCCCGCGGCGCCTGGCGCGCCTTCATCCTCGCGCTGGCATTCGCCGCCGGCACGGCACAG
GGCTCACTACTGTTCGGCGCCGTCGGCCTGGCCAACGACCAGTACGCGCGTCCGGTCGCCGACACCGAGATC
GCCAGCACCGCCGTGCTCGCCGATTGCCGTGGCTTCGTCGGGACCATCGCCAGGATCGTCCTGCTGGACGGC
TCGATCCGCTGCAACGAGGCTTTCCCCTATGGCTTCGCCAGCCCGATCAGTACCAGCGTCTACTATCCGGCG
GACATCGCCGCGTCCGACGCCAAGCTTCCGGTCATCACCTTCGTCGGCGGCATACTTTCCAACGCCGGCAAC
TATCACGAACTGATGAAGCTATGGGCCAGCCACGGCTTCATCGTGGTGATCTCTTCCGACTTCATCAACTCC
TTCCCGCTGATGCACGCCCTCGGCATCCTCGAGGTCGCGAAACTGGACAGGGACCCGGCCTCGGCCCTGCAT
GGCCGGGCCGACTTTTCCCGGACGCTGGTCGCCGGGCACTCCGCCGGCGGCCAGGCCACGCTGCAGAGCGCC
AGCCTCTCTGCACAAGCCCTGCAACTCATCGAGCCACGGTTGAAGCTGGTCGGCGCCCTGCCGATCGAGCCA
GGCCCCCTGGCCATCGGTTCCACGGTAAAGACCCCGACCCTGCTGCTGACCGGACTGGCCGATGTGGTCGTG
CCGCCGCTCAGTTGGCCGATCCTCTGGCAGGGCCCGTTGATCCGCGACGTGCCCGCCTGGGGCGCCACGGCC
ACCACGGCGACCCACTTCAGCCCGCTGCGACAGATCGAGTACAACGAGTTCGCCGGCATCAGCGTCGCCTGG
GCGCTGTACCAGGGAAAGAACGATGCCCAGGCCCGCGACTATTTCGTCGGGCGCTACTACAAGCTGGCCAGC
GACATCCAGTTCAACGATCCGCTGAGACTGCTCCGCCCCTCGCGCAACAAACTCGCCGCCGCCCTTTGA

Translation:

MAKGHEPAQIAIRAEPGQRNDQPAIRKAPGKTPTIPPSRNAFTCLKLQYPARPSGSNNETSPCVSNSEDLMT
AFASPRGAWRAFILALAFAAGTAQGSLLFGAVGLANDQYARPVADTEIASTAVLADCRGFVGTIARIVLLDG
SIRCNEAFPYGFASPISTSVYYPADIAASDAKLPVITFVGGILSNAGNYHELMKLWASHGFIVVISSDFINS
FPLMHALGILEVAKLDRDPASALHGRADFSRTLVAGHSAGGQATLQSASLSAQALQLIEPRLKLVGALPIEP
GPLAIGSTVKTPTLLLTGLADVVVPPLSWPILWQGPLIRDVPAWGATATTATHFSPLRQIEYNEFAGISVAW
ALYQGKNDAQARDYFVGRYYKLASDIQFNDPLRLLRPSRNKLAAAL*

AnnotationID:1517 GeneID:1508

AnnotatorUID: diggins

Modification Date/Time: 2005-04-22 08:08:14

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA3734

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:14379

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20165

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1508

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2688 PA3734_tr translation of PA3734 406 97.53 97.78 5 2033.0

84875 gb|AAG07121.1|AE004792_6 (AE004792) hypothetical protein PA3734 [Pseudomonas aeruginosa PAO1] 406 97.53 97.78 5 2033.0

GC ORFID: `44510`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3734`	Glimmer Score:
Start: `3581440`	Stop: `3582660`
Length: `1221`
Start Codon: `CTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3734 translation of PA3734`	Homolog Bit Score `788.0`
Other Homologs: `t_PA3734 (ORF: GLIMMER)`
GC ORF Sequence
CTGGCGAAAGGCCACGAGCCGGCGCAAATAGCCATTCGAGCTGAGCCAGGCCAACGCAACGATCAGCCCGCT ATAAGGAAAGCACCGGGAAAAACTCCAACCATCCCACCCTCGCGCAACGCCTTCACCTGCTTGAAATTGCAG TATCCGGCGCGTCCGTCAGGCAGTAACAACGAGACTTCCCCCTGCGTGTCGAACAGCGAGGATCTCATGACT GCCTTCGCATCCCCCCGCGGCGCCTGGCGCGCCTTCATCCTCGCGCTGGCATTCGCCGCCGGCACGGCACAG GGCTCACTACTGTTCGGCGCCGTCGGCCTGGCCAACGACCAGTACGCGCGTCCGGTCGCCGACACCGAGATC GCCAGCACCGCCGTGCTCGCCGATTGCCGTGGCTTCGTCGGGACCATCGCCAGGATCGTCCTGCTGGACGGC TCGATCCGCTGCAACGAGGCTTTCCCCTATGGCTTCGCCAGCCCGATCAGTACCAGCGTCTACTATCCGGCG GACATCGCCGCGTCCGACGCCAAGCTTCCGGTCATCACCTTCGTCGGCGGCATACTTTCCAACGCCGGCAAC TATCACGAACTGATGAAGCTATGGGCCAGCCACGGCTTCATCGTGGTGATCTCTTCCGACTTCATCAACTCC TTCCCGCTGATGCACGCCCTCGGCATCCTCGAGGTCGCGAAACTGGACAGGGACCCGGCCTCGGCCCTGCAT GGCCGGGCCGACTTTTCCCGGACGCTGGTCGCCGGGCACTCCGCCGGCGGCCAGGCCACGCTGCAGAGCGCC AGCCTCTCTGCACAAGCCCTGCAACTCATCGAGCCACGGTTGAAGCTGGTCGGCGCCCTGCCGATCGAGCCA GGCCCCCTGGCCATCGGTTCCACGGTAAAGACCCCGACCCTGCTGCTGACCGGACTGGCCGATGTGGTCGTG CCGCCGCTCAGTTGGCCGATCCTCTGGCAGGGCCCGTTGATCCGCGACGTGCCCGCCTGGGGCGCCACGGCC ACCACGGCGACCCACTTCAGCCCGCTGCGACAGATCGAGTACAACGAGTTCGCCGGCATCAGCGTCGCCTGG GCGCTGTACCAGGGAAAGAACGATGCCCAGGCCCGCGACTATTTCGTCGGGCGCTACTACAAGCTGGCCAGC GACATCCAGTTCAACGATCCGCTGAGACTGCTCCGCCCCTCGCGCAACAAACTCGCCGCCGCCCTTTGA