ViewGene

Locus Name:
GeneID:
Location:

GeneID:1507
TrivialName: PA14_28060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28060
PAO1 Ortholog Locus:PA2787
Sequence Length:1239
Protein Length:412
Start: 2431111
Stop: 2429873
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06175.1|AE004706_5 (AE004706) carboxypeptidase G2 precursor [Pseudomonas aeruginosa PAO1]
Identities = 408/412 (99%), Positives = 409/412 (99%)
Sequence:
GTGCACGCCAGCCGCCTGCCCCGCCTCTTGCCGTTCGCCCTCGCCTTCCTGCTTTCGCCCCCCGCCTTCGCT
GCCGACACGCCAGCCGCCGAGCTGCTGCGCCAGGCCGAAGCCGAACGTCCGGCCTACCTCGACACGCTCCGG
CAACTGGTCGCGGTGGACAGCGGTACCGGCCAGGCCGAAGGCCTCGGCCAGTTGTCCGCGCTGCTCGCCGAA
CGCCTGCAGGCGCTCGGCGCGCAAGTCCGCAGCGCACCGGCGACGCCCTCGGCCGGCGACAACCTGGTGGCC
ACCCTCGATGGCACCGGCAGCAAGCGCTTCCTGCTGATGATTCACTACGACACCGTGTTCGCCGCCGGCAGC
GCGGCGAAGCGTCCGTTCCGCGAGGACGCGGAGCGCGCCTACGGACCCGGCGTGGCCGACGCCAAGGGCGGC
GTGGCGATGGTGCTGCATGCCCTGGCGCTGCTCAGGCAGCAAGGCTTCAGGGACTACGGACGGATCACCGTG
CTGTTCAATCCCGACGAAGAAACCGGCTCCGCCGGCTCGAAGCAACTGATCGCCGAGCTGGCCCGGCAGCAG
GACTACGTCTTCTCCTACGAGCCGCCGGACCGGGACGCAGTGACGGTAGCCACCAATGGCATCGACGGCCTG
CTGCTCGAGGTGAAGGGTCGCTCGTCCCATGCCGGCTCGGCACCCGAGCAAGGCCGCAACGCCATTCTCGAA
CTGTCGCACCAGTTGCTGCGTCTCAAGGACCTCGGCGATCCGGCGAAAGGCACCACGCTGAACTGGACCCTC
GCCAGGGGCGGCGAGAAGCGCAACATCATTCCCGCCGAGGCTTCGGCGGAAGCCGACATGCGCTACTCGGAC
CCGGCCGAGAGCGAGCGGGTACTGGCCGACGCCCGGAAGCTGACCGGCGAACGCCTGATCGCCGATACCGAA
GTCAGTCTGCGTCTCGACAAGGGTCGTCCGCCCCTGGTGAAGAACCCCGCCTCGCAGCGCCTGGCGGAAACC
GCGCAGACGCTCTACGGCCGAATCGGCAAGCGCATCGAGCCGATCGCCATGCGCTTCGGCACTGACGCCGGC
TACGCCTACGTGCCCGGCAGCGACAAGCCGGCGGTGCTGGAAACCCTCGGCGTGGTCGGCGCCGGCCTGCAC
AGCGAGGCGGAATACCTCGAACTGTCGAGCATCGCCCCGCGCCTGTACCTGACGGTGGCGCTGATCCGCGAG
CTGTCCGCCGACTAG
Translation:
MHASRLPRLLPFALAFLLSPPAFAADTPAAELLRQAEAERPAYLDTLRQLVAVDSGTGQAEGLGQLSALLAE
RLQALGAQVRSAPATPSAGDNLVATLDGTGSKRFLLMIHYDTVFAAGSAAKRPFREDAERAYGPGVADAKGG
VAMVLHALALLRQQGFRDYGRITVLFNPDEETGSAGSKQLIAELARQQDYVFSYEPPDRDAVTVATNGIDGL
LLEVKGRSSHAGSAPEQGRNAILELSHQLLRLKDLGDPAKGTTLNWTLARGGEKRNIIPAEASAEADMRYSD
PAESERVLADARKLTGERLIADTEVSLRLDKGRPPLVKNPASQRLAETAQTLYGRIGKRIEPIAMRFGTDAG
YAYVPGSDKPAVLETLGVVGAGLHSEAEYLELSSIAPRLYLTVALIRELSAD*
AnnotationID:1516GeneID:1507
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 03:03:59
Gene Name:cpg2
Confidence Code:2
GeneProduct:carboxypeptidase G2 precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:peptidase, M20/M25/M40 family
Functional Category Confidence Code:5
COGs:pfam01546,COG0624
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:3.4.17.11
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55637.1| (AE016863) peptidase, M20/M25/M40 family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 415

 Score =  581 bits (1498), Expect = e-165
 Identities = 290/411 (70%), Positives = 352/411 (85%), Gaps = 3/411 (0%)

>emb|CAD16802.1| (AL646073) PUTATIVE CARBOXYPEPTIDASE G2 PRECURSOR (FOLATE HYDROLASE
           G2) TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 436

 Score =  338 bits (868), Expect = 3e-92
 Identities = 185/421 (43%), Positives = 271/421 (64%), Gaps = 21/421 (4%)

Structural Features:
pfam01546, Peptidase family M20/M25/M40.
CD-Length = 378 residues, 100.0% aligned
Score =  175 bits (445), Expect = 7e-45
Identities = 106/384 (27%), Positives = 151/384 (39%), Gaps = 25/384 (6%)

COG0624, ArgE, Acetylornithine 
deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
[Amino acid transport and metabolism]
CD-Length = 409 residues,  99.5% aligned
Score =  171 bits (435), Expect = 9e-44
Identities = 124/413 (30%), Positives = 169/413 (40%), Gaps = 37/413 (8%)
Genomic Context:
Comment:
ReferenceID:14377
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20163
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36269
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1507_cdd.htm.
URL:
ReferenceID:36396
Author/Investigator(s): Minton NP, Atkinson T, Bruton CJ, Sherwood RF.
Title: The complete nucleotide sequence of the Pseudomonas gene coding for carboxypeptidase G2.
PubMed: 6396165
MedLine:
Source:
Gene. 1984 Nov;31(1-3):31-8.

Erratum in:
    * Gene 1986;42(3):353.

Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6396165
Homologs By Global Alignment
Gene ID:1507

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2687 PA2787_tr translation of PA2787 412 99.02 99.27 0 2035.0
84868 gb|AAG06175.1|AE004706_5 (AE004706) carboxypeptidase G2 precursor [Pseudomonas aeruginosa PAO1] 412 98.78 99.27 0 2032.0
84869 gb|AAO55637.1| (AE016863) peptidase, M20/M25/M40 family [Pseudomonas syringae pv. tomato str. DC3000] 417 69.30 84.41 7 1495.0
84870 emb|CAD16802.1| (AL646073) PUTATIVE CARBOXYPEPTIDASE G2 PRECURSOR (FOLATE HYDROLASE G2) TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 438 42.69 62.78 28 883.0
84871 emb|CAD17424.1| (AL646077) PROBABLE HYDROLASE PROTEIN [Ralstonia solanacearum] 414 41.54 58.93 22 804.0
GC ORFID: 44509How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2787Glimmer Score:
Start: 2522815Stop: 2524053
Length: 1239
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2787 translation of PA2787Homolog Bit Score 788.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene907 (ORF: BLASTX 578.0), psyr_15may02_Scaffold11_revised_gene1821 (ORF: BLASTX 296.0), t_PA2787 (ORF: GLIMMER)
GC ORF Sequence
GTGCACGCCAGCCGCCTGCCCCGCCTCTTGCCGTTCGCCCTCGCCTTCCTGCTTTCGCCCCCCGCCTTCGCT
GCCGACACGCCAGCCGCCGAGCTGCTGCGCCAGGCCGAAGCCGAACGTCCGGCCTACCTCGACACGCTCCGG
CAACTGGTCGCGGTGGACAGCGGTACCGGCCAGGCCGAAGGCCTCGGCCAGTTGTCCGCGCTGCTCGCCGAA
CGCCTGCAGGCGCTCGGCGCGCAAGTCCGCAGCGCACCGGCGACGCCCTCGGCCGGCGACAACCTGGTGGCC
ACCCTCGATGGCACCGGCAGCAAGCGCTTCCTGCTGATGATTCACTACGACACCGTGTTCGCCGCCGGCAGC
GCGGCGAAGCGTCCGTTCCGCGAGGACGCGGAGCGCGCCTACGGACCCGGCGTGGCCGACGCCAAGGGCGGC
GTGGCGATGGTGCTGCATGCCCTGGCGCTGCTCAGGCAGCAAGGCTTCAGGGACTACGGACGGATCACCGTG
CTGTTCAATCCCGACGAAGAAACCGGCTCCGCCGGCTCGAAGCAACTGATCGCCGAGCTGGCCCGGCAGCAG
GACTACGTCTTCTCCTACGAGCCGCCGGACCGGGACGCAGTGACGGTAGCCACCAATGGCATCGACGGCCTG
CTGCTCGAGGTGAAGGGTCGCTCGTCCCATGCCGGCTCGGCACCCGAGCAAGGCCGCAACGCCATTCTCGAA
CTGTCGCACCAGTTGCTGCGTCTCAAGGACCTCGGCGATCCGGCGAAAGGCACCACGCTGAACTGGACCCTC
GCCAGGGGCGGCGAGAAGCGCAACATCATTCCCGCCGAGGCTTCGGCGGAAGCCGACATGCGCTACTCGGAC
CCGGCCGAGAGCGAGCGGGTACTGGCCGACGCCCGGAAGCTGACCGGCGAACGCCTGATCGCCGATACCGAA
GTCAGTCTGCGTCTCGACAAGGGTCGTCCGCCCCTGGTGAAGAACCCCGCCTCGCAGCGCCTGGCGGAAACC
GCGCAGACGCTCTACGGCCGAATCGGCAAGCGCATCGAGCCGATCGCCATGCGCTTCGGCACTGACGCCGGC
TACGCCTACGTGCCCGGCAGCGACAAGCCGGCGGTGCTGGAAACCCTCGGCGTGGTCGGCGCCGGCCTGCAC
AGCGAGGCGGAATACCTCGAACTGTCGAGCATCGCCCCGCGCCTGTACCTGACGGTGGCGCTGATCCGCGAG
CTGTCCGCCGACTAG