ViewGene
Locus Name:
GeneID:
Location:

GeneID:1506
TrivialName: PA14_47560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47560
PAO1 Ortholog Locus:PA1286
Sequence Length:1200
Protein Length:399
Start: 4237343
Stop: 4236144
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04675.1|AE004558_4 (AE004558) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 399/399 (100%), Positives = 399/399 (100%)
Sequence:
ATGCCGCGTGCCGCCTTCTGGATCCTGCTGTCCGGAGCCCTGATCCTCGCCCTGTCCCTCGGCGTGCGACAT
GGCTTCGGCCTGTTCCTCGCGCCGATGAGCGCCGACTTCGGCTGGGGCCGCGAAGTCTTCGCCTTCGCCATC
GCCTTGCAGAACCTGGTCTGGGGCCTGGCCCAGCCGTTCACCGGGGCGCTCGCCGACCGCTACGGCGCGGCG
CGGGCGGTGCTGGTGGGGGGCCTGCTGTACGCCCTCGGCCTGGTCCTGATGGGACTCTCGCAGTCGGCCAGT
GGGCTGTCGCTGAGCGCCGGCCTGCTGATCGGCCTGGGCCTTTCCGGCACCTCGTTCTCGGTGATCCTCGGC
GCCGTCGGCCGCGCAGTGCCGGCGGAGCAGCGCAGCATGGCGATGGGTATCTCCAGCGCGGCCGGCTCCTTC
GGCCAGTTCGCCATGCTGCCCGGTACCCTCGGCCTGATCGGCTGGCTGGGCTGGTCCTCGGCCCTGCTCGCC
CTGGGCCTGCTGGTGGCGCTGATCGTGCCGCTGGCCGGGCTGATGAAGGATCGCCCGTTGCCGCCGCAGGGC
CACGAACAGAGCCTCGGCGAAGCGCTGCGCGAGGCCTGCGCGCATTCCGGGTTCTGGCTGCTGGCGCTGGGC
TTCTTCGTCTGCGGCTTCCAGGTGGTGTTCATCGGCGTACACCTGCCGGCCTACCTGGTCGACCAGCACCTG
CCGGCGCAGGTCGGCACCACGGTGCTGGCGCTGGTCGGGCTGTTCAACGTGTTCGGCACCTACATCGCCGGC
TGGCTCGGCGGGCGCTGGTCGAAGCCGCGCCTGCTGACCGCGCTGTACCTGGTGCGCGGGGTAGTGATCGTG
CTGTTCCTCTGGCTGCCGCTGAGCGTCTACAGCGCCTACGCCTTCGGCGTGGCCATGGGGCTGCTGTGGCTG
TCCACGGTGCCCCTGACCAACGGCACCGTGGCGACCCTGTTCGGCGTGCGCAACCTGTCGATGCTCGGCGGC
ATCGTGTTCCTCTTCCACCAGTTGGGCGCCTTCCTCGGCGGCTGGTTGGGCGGGGTGGTCTACGACCGCACC
GGCAGCTACGACCTGGTCTGGCAGTTGTCGATCCTTCTAAGCCTGCTCGCGGCGCTGCTCAACTGGCCGGTG
CGCGAGCGTCCGGTGGCGCGCCTGCAGGTGGCCGGAGGCGCGGCGTGA
Translation:
MPRAAFWILLSGALILALSLGVRHGFGLFLAPMSADFGWGREVFAFAIALQNLVWGLAQPFTGALADRYGAA
RAVLVGGLLYALGLVLMGLSQSASGLSLSAGLLIGLGLSGTSFSVILGAVGRAVPAEQRSMAMGISSAAGSF
GQFAMLPGTLGLIGWLGWSSALLALGLLVALIVPLAGLMKDRPLPPQGHEQSLGEALREACAHSGFWLLALG
FFVCGFQVVFIGVHLPAYLVDQHLPAQVGTTVLALVGLFNVFGTYIAGWLGGRWSKPRLLTALYLVRGVVIV
LFLWLPLSVYSAYAFGVAMGLLWLSTVPLTNGTVATLFGVRNLSMLGGIVFLFHQLGAFLGGWLGGVVYDRT
GSYDLVWQLSILLSLLAALLNWPVRERPVARLQVAGGAA*
AnnotationID:1515GeneID:1506
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 19:07:54
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA1286
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55238.1| (AE016861) transporter, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 402

 Score =  665 bits (1715), Expect = 0.0
 Identities = 328/397 (82%), Positives = 360/397 (90%)

>gb|AAN67305.1|AE016356_13 (AE016780) transporter, putative [Pseudomonas putida KT2440]
          Length = 406

 Score =  654 bits (1686), Expect = 0.0
 Identities = 324/391 (82%), Positives = 351/391 (89%)

>dbj|BAC62626.1| (AP005088) putative MFS transporter [Vibrio parahaemolyticus]
          Length = 404

 Score =  376 bits (966), Expect = e-103
 Identities = 185/390 (47%), Positives = 263/390 (67%), Gaps = 6/390 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3015




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20160




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37506




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1506_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1506
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2686
                           PA1286_tr
                           translation of PA1286
                           399
                           99.99
                           99.99
                           0
                           2035.0
     

     
     
84853
                           gb|AAG04675.1|AE004558_4
                           (AE004558) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           399
                           99.99
                           99.99
                           0
                           2035.0
     

     
     
84854
                           gb|AAO55238.1|
                           (AE016861) transporter, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           402
                           81.59
                           89.80
                           3
                           1712.0
     

     
     
84855
                           gb|AAN67305.1|AE016356_13
                           (AE016780) transporter, putative [Pseudomonas putida KT2440]
                           408
                           79.41
                           86.27
                           11
                           1679.0
     

     
     
84861
                           emb|CAE31933.1|
                           (BX640441) putative membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           402
                           48.75
                           64.92
                           5
                           946.0
     

     






      

          
GC ORFID: 44508How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1286Glimmer Score: 

          
Start: 716566Stop: 717765

          
Length: 1200


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1286 translation of PA1286Homolog Bit Score 788.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1368 (ORF: BLASTX 662.0), t_PA1286 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCGTGCCGCCTTCTGGATCCTGCTGTCCGGAGCCCTGATCCTCGCCCTGTCCCTCGGCGTGCGACAT 
GGCTTCGGCCTGTTCCTCGCGCCGATGAGCGCCGACTTCGGCTGGGGCCGCGAAGTCTTCGCCTTCGCCATC 
GCCTTGCAGAACCTGGTCTGGGGCCTGGCCCAGCCGTTCACCGGGGCGCTCGCCGACCGCTACGGCGCGGCG 
CGGGCGGTGCTGGTGGGGGGCCTGCTGTACGCCCTCGGCCTGGTCCTGATGGGACTCTCGCAGTCGGCCAGT 
GGGCTGTCGCTGAGCGCCGGCCTGCTGATCGGCCTGGGCCTTTCCGGCACCTCGTTCTCGGTGATCCTCGGC 
GCCGTCGGCCGCGCAGTGCCGGCGGAGCAGCGCAGCATGGCGATGGGTATCTCCAGCGCGGCCGGCTCCTTC 
GGCCAGTTCGCCATGCTGCCCGGTACCCTCGGCCTGATCGGCTGGCTGGGCTGGTCCTCGGCCCTGCTCGCC 
CTGGGCCTGCTGGTGGCGCTGATCGTGCCGCTGGCCGGGCTGATGAAGGATCGCCCGTTGCCGCCGCAGGGC 
CACGAACAGAGCCTCGGCGAAGCGCTGCGCGAGGCCTGCGCGCATTCCGGGTTCTGGCTGCTGGCGCTGGGC 
TTCTTCGTCTGCGGCTTCCAGGTGGTGTTCATCGGCGTACACCTGCCGGCCTACCTGGTCGACCAGCACCTG 
CCGGCGCAGGTCGGCACCACGGTGCTGGCGCTGGTCGGGCTGTTCAACGTGTTCGGCACCTACATCGCCGGC 
TGGCTCGGCGGGCGCTGGTCGAAGCCGCGCCTGCTGACCGCGCTGTACCTGGTGCGCGGGGTAGTGATCGTG 
CTGTTCCTCTGGCTGCCGCTGAGCGTCTACAGCGCCTACGCCTTCGGCGTGGCCATGGGGCTGCTGTGGCTG 
TCCACGGTGCCCCTGACCAACGGCACCGTGGCGACCCTGTTCGGCGTGCGCAACCTGTCGATGCTCGGCGGC 
ATCGTGTTCCTCTTCCACCAGTTGGGCGCCTTCCTCGGCGGCTGGTTGGGCGGGGTGGTCTACGACCGCACC 
GGCAGCTACGACCTGGTCTGGCAGTTGTCGATCCTTCTAAGCCTGCTCGCGGCGCTGCTCAACTGGCCGGTG 
CGCGAGCGTCCGGTGGCGCGCCTGCAGGTGGCCGGAGGCGCGGCGTGA