ViewGene
Locus Name:
GeneID:
Location:

GeneID:1505
TrivialName: PA14_50820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50820
PAO1 Ortholog Locus:PA1047
Sequence Length:1179
Protein Length:392
Start: 4515906
Stop: 4514728
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04436.1|AE004537_1 (AE004537) probable esterase [Pseudomonas aeruginosa PAO1]
Identities = 385/392 (98%), Positives = 387/392 (98%)
Sequence:
ATGCTCCGACCACTTTCCCACCGGAACTTGCCCATGACGCCCCAAGGCCACTGTGACAGCCGTTTTGCCCCG
CTTGCCGAGGCCTTCGCCCGGCTTTTCGACAATCCGCAGGAGCGCGGCGCGGCGTTGTGCCTGGAGGTCGGT
GGCGAGACGGTGGTCGACCTCTGGGGCGGCGTCGCGGACAAGGACGGCGAGCAGCCCTGGCAGCGCGACACC
ATCCTCAATCTGTTCTCCTGCACCAAGACCTTCACCGCCGTTGCCGTGCTGCAACTGGTGGCCGAGGGCAAG
CTCGAACTGGACGCGCCGGTGGCACGCTACTGGCCCGAGTTCGCCGCGGCCGGCAAGGCAGCGATCAGCGTG
CGCCAGTTGCTCTGCCATCGCGCCGGCCTGCCGGCGCTGCGCAAGCAGATGCCGCCCGAGGCACTCTACGAC
TGGCAGGCGATGACCGCGGCACTGGCCGCCGAGGAGCCCTGGTGGACGCCCGGCGAAGCGCACGGCTATGCA
CCGATTACCTACGGCTGGCTGCTCGGCGAGGTGATCCGCCGGGTCGACGGCCGCGAGCCGGGCGAGGCCATC
GTGGCGCGTACCGCGACACCGCTGGGCCTGGATTTCCATATCGGCCTGGACGACAGCCAGTTCGACCGCGTC
GCCCACATGGCGCGGAGCAAGGGCAGCCTCGGCGACGCTGCCGCCCAGCGCATGCTGAAGACCATGATGAGC
GAGCCATTGGCGCTGACCACCCGTGCCTTCACCAATCCGCCGTCGATCCTCACCAGCACCAACAAGCCGGAA
TGGCGACGCATGCAGCAGCCGGCCGCCAATGGCCATGGCAACGCGCGCGCGCTCGCCGGCTTCTATAGCGGC
CTGTTGCAGGGACGTTTGCTGGAGGATGAACTGCTGGGCCAGTTGGCCCACGAACACGCGGTAGGCGAGGAT
CGGACCTTGCTGACCCGGACCCGCTTCGGCCTCGGCACCATGCTCGACCAACCGGGCGTGGCCAATGCGACC
TACGGACTCGGCCCCAAGGCCTTCGGCCACCCTGGAGCGGGTGGCTCGATCGGCTTCGCCGATCCCGAGCGC
GACCTGGCTTTTTCCTTTGTCAGCAACGCCTTGGGGCCGTACGTGCTGATGGATCCGCGGGCGCAACAGTTG
GCGCGTGTCGCGGGGGAGTGTCTGTAA
Translation:
MLRPLSHRNLPMTPQGHCDSRFAPLAEAFARLFDNPQERGAALCLEVGGETVVDLWGGVADKDGEQPWQRDT
ILNLFSCTKTFTAVAVLQLVAEGKLELDAPVARYWPEFAAAGKAAISVRQLLCHRAGLPALRKQMPPEALYD
WQAMTAALAAEEPWWTPGEAHGYAPITYGWLLGEVIRRVDGREPGEAIVARTATPLGLDFHIGLDDSQFDRV
AHMARSKGSLGDAAAQRMLKTMMSEPLALTTRAFTNPPSILTSTNKPEWRRMQQPAANGHGNARALAGFYSG
LLQGRLLEDELLGQLAHEHAVGEDRTLLTRTRFGLGTMLDQPGVANATYGLGPKAFGHPGAGGSIGFADPER
DLAFSFVSNALGPYVLMDPRAQQLARVAGECL*
AnnotationID:1514GeneID:1505
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 13:01:22
Gene Name:
Confidence Code:3
GeneProduct:probable esterase
Cell Localization:()
Synonyms:PA1047
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00144, COG1680
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00144, Beta-lactamase. Score: 204, 2e-53
COG1680, AmpC, Beta-lactamase class C and other penicillin binding 
proteins [Defense mechanisms]. Score: 142, 7e-35






   
Genomic Context:






   
Comment:


















    ReferenceID:3013




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20158




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32206




  
Author/Investigator(s):
        McKay DB, Jennings MP, Godfrey EA, MacRae IC, Rogers PJ, Beacham IR.





  
Title:
        Molecular analysis of an esterase-encoding gene from a lipolytic psychrotrophic pseudomonad.




  
PubMed:
        92268850


MedLine:
        




    
Source:
J Gen Microbiol. 1992 Apr;138 ( Pt 4):701-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1505
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2685
                           PA1047_tr
                           translation of PA1047
                           392
                           98.21
                           98.72
                           0
                           2034.0
     

     
     
84840
                           gb|AAG04436.1|AE004537_1
                           (AE004537) probable esterase [Pseudomonas aeruginosa PAO1]
                           392
                           98.21
                           98.72
                           0
                           2034.0
     

     
     
84842
                           gb|AAN66752.1|AE016303_7
                           (AE016778) carboxylesterase [Pseudomonas putida KT2440]
                           392
                           71.68
                           81.63
                           11
                           1524.0
     

     
     
84843
                           gb|AAO57575.1|
                           (AE016870) carboxylesterase [Pseudomonas syringae pv. tomato str. DC3000]
                           393
                           69.72
                           81.67
                           12
                           1512.0
     

     
     
84841
                           gb|AAA25813.1|
                           (M68491) esterase [Pseudomonas sp.]
                           400
                           69.00
                           80.75
                           19
                           1521.0
     

     






      

          
GC ORFID: 44507How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1047Glimmer Score: 

          
Start: 438002Stop: 439180

          
Length: 1179


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1047 translation of PA1047Homolog Bit Score 788.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6296 (ORF: BLASTX 593.0), t_PA1047 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCCGACCACTTTCCCACCGGAACTTGCCCATGACGCCCCAAGGCCACTGTGACAGCCGTTTTGCCCCG 
CTTGCCGAGGCCTTCGCCCGGCTTTTCGACAATCCGCAGGAGCGCGGCGCGGCGTTGTGCCTGGAGGTCGGT 
GGCGAGACGGTGGTCGACCTCTGGGGCGGCGTCGCGGACAAGGACGGCGAGCAGCCCTGGCAGCGCGACACC 
ATCCTCAATCTGTTCTCCTGCACCAAGACCTTCACCGCCGTTGCCGTGCTGCAACTGGTGGCCGAGGGCAAG 
CTCGAACTGGACGCGCCGGTGGCACGCTACTGGCCCGAGTTCGCCGCGGCCGGCAAGGCAGCGATCAGCGTG 
CGCCAGTTGCTCTGCCATCGCGCCGGCCTGCCGGCGCTGCGCAAGCAGATGCCGCCCGAGGCACTCTACGAC 
TGGCAGGCGATGACCGCGGCACTGGCCGCCGAGGAGCCCTGGTGGACGCCCGGCGAAGCGCACGGCTATGCA 
CCGATTACCTACGGCTGGCTGCTCGGCGAGGTGATCCGCCGGGTCGACGGCCGCGAGCCGGGCGAGGCCATC 
GTGGCGCGTACCGCGACACCGCTGGGCCTGGATTTCCATATCGGCCTGGACGACAGCCAGTTCGACCGCGTC 
GCCCACATGGCGCGGAGCAAGGGCAGCCTCGGCGACGCTGCCGCCCAGCGCATGCTGAAGACCATGATGAGC 
GAGCCATTGGCGCTGACCACCCGTGCCTTCACCAATCCGCCGTCGATCCTCACCAGCACCAACAAGCCGGAA 
TGGCGACGCATGCAGCAGCCGGCCGCCAATGGCCATGGCAACGCGCGCGCGCTCGCCGGCTTCTATAGCGGC 
CTGTTGCAGGGACGTTTGCTGGAGGATGAACTGCTGGGCCAGTTGGCCCACGAACACGCGGTAGGCGAGGAT 
CGGACCTTGCTGACCCGGACCCGCTTCGGCCTCGGCACCATGCTCGACCAACCGGGCGTGGCCAATGCGACC 
TACGGACTCGGCCCCAAGGCCTTCGGCCACCCTGGAGCGGGTGGCTCGATCGGCTTCGCCGATCCCGAGCGC 
GACCTGGCTTTTTCCTTTGTCAGCAACGCCTTGGGGCCGTACGTGCTGATGGATCCGCGGGCGCAACAGTTG 
GCGCGTGTCGCGGGGGAGTGTCTGTAA