ViewGene
Locus Name:
GeneID:
Location:

GeneID:1504
TrivialName: PA14_52580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52580
PAO1 Ortholog Locus:PA0904
Sequence Length:1239
Protein Length:412
Start: 4662001
Stop: 4660763
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04293.1|AE004525_1 (AE004525) aspartate kinase alpha and beta chain [Pseudomonas aeruginosa PAO1]
Identities = 412/412 (100%), Positives = 412/412 (100%)
Sequence:
ATGGCTTTGATCGTACAGAAGTTTGGAGGGACCTCCGTCGGCACCGTCGAGCGTATCGAGCAGGTGGCCGAG
AAGGTGAAGAAATTCCGCGAAGCGGGCGATGACGTCGTCGTGGTGGTATCCGCCATGAGCGGCGAGACCAAC
CGTCTGATCGGCCTGGCCAACCAGATCATGGAGCAGCCGGTTCCGCGCGAACTGGACGTCATGGTCTCGACC
GGAGAGCAGGTGACCATCGCCCTGCTCAGCATGGCTCTGATCAAGCGCGGCGTGCCGGCGGTCTCCTATACC
GGCAACCAGGTGCGTATCCTCACCGACAGCGCACACACCAAGGCGCGCATCCTGCACATCGACGACACCCAC
ATCCGCGCCGACCTCAAGGCCGGCAGGGTAGTGGTGGTCGCCGGTTTCCAGGGCGTCGACGGCAACGGCAAC
ATCACCACGCTGGGCCGCGGCGGTTCCGATACCACCGGGGTGGCCCTGGCGGCGGCGTTGAAGGCCGACGAA
TGCCAGATCTACACCGACGTCGACGGCGTCTACACCACCGATCCGCGCGTAGTGCCGCAGGCCCGCCGGCTG
GACAAGATCACCTTCGAGGAAATGCTGGAAATGGCCAGCCTCGGTTCCAAGGTGCTGCAGATCCGGGCGGTC
GAGTTCGCCGGCAAGTACAACGTTCCGCTGCGCGTGCTGCACAGCTTCCAGGAGGGTCCGGGCACCCTCATT
ACTATCGATGATGAAGAGGAATCCATGGAACAGCCGATCATCTCCGGCATCGCCTTCAACCGCGACGAAGCC
AAGCTGACCATCCGTGGCGTACCCGATACCCCCGGCGTGGCCTTCAAGATCCTCGGGCCGATCAGTGCCGCC
AATGTGGAAGTCGACATGATCGTGCAGAACGTGGCGCACGATAACACCACCGACTTCACCTTCACGGTGCAT
CGCAACGATTACCTGAACGCCCTGGAAATTCTCAAGCAGACCGCCGCCAACATCGGCGCGCGCGAAGCCATC
GGCGACACCAACATCGCCAAGGTTTCCATCGTCGGCGTCGGCATGCGTTCGCACGCCGGCGTGGCCAGCCGC
ATGTTCGAGGCGCTGGCCAAGGAAAGCATCAACATCCAGATGATCTCCACCTCGGAAATCAAGGTTTCCGTG
GTGATCGAAGAGAAGTACCTGGAACTGGCGGTACGTGCCCTGCACACGGCGTTCGAGCTCGACGCGCCGGCG
CGACAGGGTGAGTGA
Translation:
MALIVQKFGGTSVGTVERIEQVAEKVKKFREAGDDVVVVVSAMSGETNRLIGLANQIMEQPVPRELDVMVST
GEQVTIALLSMALIKRGVPAVSYTGNQVRILTDSAHTKARILHIDDTHIRADLKAGRVVVVAGFQGVDGNGN
ITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYTTDPRVVPQARRLDKITFEEMLEMASLGSKVLQIRAV
EFAGKYNVPLRVLHSFQEGPGTLITIDDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAA
NVEVDMIVQNVAHDNTTDFTFTVHRNDYLNALEILKQTAANIGAREAIGDTNIAKVSIVGVGMRSHAGVASR
MFEALAKESINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELDAPARQGE*
AnnotationID:1513GeneID:1504
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 12:12:57
Gene Name:lysC
Confidence Code:2
GeneProduct:aspartate kinase alpha and beta chain
Cell Localization:()
Synonyms:PA0904, ask, akaB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:aspartokinase
Functional Category Confidence Code:5
COGs:COG0527
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Glycine, serine and threonine metabolism;Lysine biosynthesis 
Homology:






 
Structural Features:
COG0527, LysC, Aspartokinases [Amino acid transport and metabolism]. Score: 417, 3e-117






   
Genomic Context:






   
Comment:


















    ReferenceID:3011




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16993




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA0904_CDS.cgi


    		




 
URL:

















    ReferenceID:20156




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1504
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2684
                           PA0904_tr
                           translation of PA0904
                           412
                           99.99
                           99.99
                           0
                           2035.0
     

     
     
84742
                           gb|AAG04293.1|AE004525_1
                           (AE004525) aspartate kinase alpha and beta chain [Pseudomonas aeruginosa PAO1]
                           412
                           99.99
                           99.99
                           0
                           2035.0
     

     
     
84743
                           gb|AAO55362.1|
                           (AE016862) aspartate kinase, monofunctional class [Pseudomonas syringae pv. tomato str. DC3000]
                           412
                           90.77
                           95.14
                           2
                           1833.0
     

     
     
84744
                           gb|AAN70048.1|AE016644_2
                           (AE016790) aspartate kinase, monofunctional class [Pseudomonas putida KT2440]
                           412
                           90.04
                           94.90
                           1
                           1831.0
     

     
     
84746
                           dbj|BAB84686.1|
                           (AB038354) aspartate kinase [Methylobacillus glycogenes]
                           414
                           71.73
                           82.85
                           8
                           1464.0
     

     






      

          
GC ORFID: 44506How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0904Glimmer Score: 

          
Start: 291906Stop: 293144

          
Length: 1239


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0904 translation of PA0904Homolog Bit Score 788.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7825 (ORF: BLASTX 709.0), t_PA0904 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTTTGATCGTACAGAAGTTTGGAGGGACCTCCGTCGGCACCGTCGAGCGTATCGAGCAGGTGGCCGAG 
AAGGTGAAGAAATTCCGCGAAGCGGGCGATGACGTCGTCGTGGTGGTATCCGCCATGAGCGGCGAGACCAAC 
CGTCTGATCGGCCTGGCCAACCAGATCATGGAGCAGCCGGTTCCGCGCGAACTGGACGTCATGGTCTCGACC 
GGAGAGCAGGTGACCATCGCCCTGCTCAGCATGGCTCTGATCAAGCGCGGCGTGCCGGCGGTCTCCTATACC 
GGCAACCAGGTGCGTATCCTCACCGACAGCGCACACACCAAGGCGCGCATCCTGCACATCGACGACACCCAC 
ATCCGCGCCGACCTCAAGGCCGGCAGGGTAGTGGTGGTCGCCGGTTTCCAGGGCGTCGACGGCAACGGCAAC 
ATCACCACGCTGGGCCGCGGCGGTTCCGATACCACCGGGGTGGCCCTGGCGGCGGCGTTGAAGGCCGACGAA 
TGCCAGATCTACACCGACGTCGACGGCGTCTACACCACCGATCCGCGCGTAGTGCCGCAGGCCCGCCGGCTG 
GACAAGATCACCTTCGAGGAAATGCTGGAAATGGCCAGCCTCGGTTCCAAGGTGCTGCAGATCCGGGCGGTC 
GAGTTCGCCGGCAAGTACAACGTTCCGCTGCGCGTGCTGCACAGCTTCCAGGAGGGTCCGGGCACCCTCATT 
ACTATCGATGATGAAGAGGAATCCATGGAACAGCCGATCATCTCCGGCATCGCCTTCAACCGCGACGAAGCC 
AAGCTGACCATCCGTGGCGTACCCGATACCCCCGGCGTGGCCTTCAAGATCCTCGGGCCGATCAGTGCCGCC 
AATGTGGAAGTCGACATGATCGTGCAGAACGTGGCGCACGATAACACCACCGACTTCACCTTCACGGTGCAT 
CGCAACGATTACCTGAACGCCCTGGAAATTCTCAAGCAGACCGCCGCCAACATCGGCGCGCGCGAAGCCATC 
GGCGACACCAACATCGCCAAGGTTTCCATCGTCGGCGTCGGCATGCGTTCGCACGCCGGCGTGGCCAGCCGC 
ATGTTCGAGGCGCTGGCCAAGGAAAGCATCAACATCCAGATGATCTCCACCTCGGAAATCAAGGTTTCCGTG 
GTGATCGAAGAGAAGTACCTGGAACTGGCGGTACGTGCCCTGCACACGGCGTTCGAGCTCGACGCGCCGGCG 
CGACAGGGTGAGTGA