ViewGene
Locus Name:
GeneID:
Location:

GeneID:1503
TrivialName: PA14_52870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52870
PAO1 Ortholog Locus:PA0882
Sequence Length:1203
Protein Length:400
Start: 4687219
Stop: 4686017
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04271.1|AE004522_13 (AE004522) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 397/400 (99%), Positives = 399/400 (99%)
Sequence:
ATGACGCAATCCCACCAGCCGCGCCCGCTCGACGGCATCACCGTGGTCAGCCTGGAGCACGCCATCGCCGCG
CCCTTCTGCACCCGCCAACTGGCCGATCTCGGCGCGCGGGTGATCAAGATCGAACGCCCCGGCGTCGGCGAT
TTCGCCCGCGGTTACGACGAGCGGGTCAACGGCCTGTCGTCGCACTTCGTCTGGACCAATCGTTCCAAGCAG
AGCCTCAGCCTCGATCTCAAGCAGGCCGAGGCGCTGCCGTTGCTGGAGAAGCTGCTGGCCGGCGCCGACGTG
CTGGTGCAGAACCTCGCGCCGGGCGCCGCCGCGCGCCTGGGCCTGTCCTACGAggCGTTGCGCGAGCGCTTC
CCGCGACTGATCGTCTGCGATATCTCCGGCTACGGCGAAGGCGGTCCCTACGAGAAGAAGAAGGCCTACGAC
CTGCTGATCCaGAGCGAGGGCGGCTTCCTTTCGGTGACCGGCGGCGCCGGGCCGAACGAGATGGCCAAGGCC
GGCTGTTCGATCGCCGATATCGCCGCCGGCATGTACGCCTACAGCAGCATCCTCTCGGCCCTGCTGCTGCGC
GAGCGCACTGGCGAGGGCAGCCGCATCGACGTGTCGATGCTGGAGAGCCTGGTGGAGTGGATGGGCTACCCG
ATGTACTACGCCTACCAGGACGCGCCGCCACCGCCGCGCGCCGGCGCTTCGCACTCGACCATCTACCCCTAT
GGGCCATTCCTCGCCGGCGACGGCGGCACGGTGATGCTCGGCCTGCAGAACGAGCGCGAGTGGCGGGCCTTC
TGCGACAAGGTCCTGCGCCGCCCGGAGCTGGCCGACGACGAACGCTTCTCGGCGAACTTCAAGCGCTCGGCC
AACCGCGAGGAGCTGCGTGCGCTGATCGTCGAAGCCTTCGCCGCCTTGCCGGCCGCCGAGGTGGTGGCGCGC
CTGGAACAGGCGCAGATCGCCAACGCCCACGTCAACGACATGGCCGGGGTCTGGGCGCACCCGCAGTTGCAG
GCGCGGCAACGCTGGACCTCCATCGACAGCCCGGCCGGGCGCCTGCCGGCGTTGTTGCCGCCGGCCAGCAGC
AGCGCCTTCGTTCCGCGCATGGATGCGGTGCCGGCGCTGGGCGGCGACAGCGACGCGCTGCTTGCCGAACTG
GGCTGTACCGCGGCCGATATCCAGCGCCTGCGCGCGACCGGAACGGTATGA
Translation:
MTQSHQPRPLDGITVVSLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDERVNGLSSHFVWTNRSKQ
SLSLDLKQAEALPLLEKLLAGADVLVQNLAPGAAARLGLSYEALRERFPRLIVCDISGYGEGGPYEKKKAYD
LLIQSEGGFLSVTGGAGPNEMAKAGCSIADIAAGMYAYSSILSALLLRERTGEGSRIDVSMLESLVEWMGYP
MYYAYQDAPPPPRAGASHSTIYPYGPFLAGDGGTVMLGLQNEREWRAFCDKVLRRPELADDERFSANFKRSA
NREELRALIVEAFAALPAAEVVARLEQAQIANAHVNDMAGVWAHPQLQARQRWTSIDSPAGRLPALLPPASS
SAFVPRMDAVPALGGDSDALLAELGCTAADIQRLRATGTV*
AnnotationID:1512GeneID:1503
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 15:03:53
Gene Name:
Confidence Code:3
GeneProduct:predicted acyl-CoA transferases/carnitine dehydratase
Cell Localization:()
Synonyms:PA0882
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1804, KOG3957, pfam02515
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydatase. Score: 403, 6e-113
KOG3957, Predicted L-carnitine dehydratase/alpha-methylacyl-CoA racemase. Score: 193, 9e-50
pfam02515, CoA_transf_3, CoA-transferase family III. Score: 167, 4e-42






   
Genomic Context:






   
Comment:


















    ReferenceID:3009




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20154




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1503
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2683
                           PA0882_tr
                           translation of PA0882
                           400
                           99.25
                           99.75
                           0
                           2035.0
     

     
     
84728
                           gb|AAG04271.1|AE004522_13
                           (AE004522) hypothetical protein PA0882 [Pseudomonas aeruginosa PAO1]
                           400
                           99.25
                           99.75
                           0
                           2035.0
     

     
     
84729
                           emb|CAE34442.1|
                           (BX640449) putative CAIB/BAIF-family enzyme [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           400
                           75.50
                           84.75
                           2
                           1551.0
     

     
     
84730
                           emb|CAE38928.1|
                           (BX640434) putative CAIB/BAIF-family enzyme [Bordetella parapertussis]
                           400
                           75.25
                           84.50
                           2
                           1547.0
     

     
     
84731
                           emb|CAE35933.1|
                           (BX640424) CAIB/BAIF family protein [Bordetella parapertussis]
                           402
                           67.41
                           79.35
                           11
                           1377.0
     

     






      

          
GC ORFID: 44505How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0882Glimmer Score: 

          
Start: 266688Stop: 267890

          
Length: 1203


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0882 translation of PA0882Homolog Bit Score 788.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene293 (ORF: BLASTX 607.0), t_PA0882 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCAATCCCACCAGCCGCGCCCGCTCGACGGCATCACCGTGGTCAGCCTGGAGCACGCCATCGCCGCG 
CCCTTCTGCACCCGCCAACTGGCCGATCTCGGCGCGCGGGTGATCAAGATCGAACGCCCCGGCGTCGGCGAT 
TTCGCCCGCGGTTACGACGAGCGGGTCAACGGCCTGTCGTCGCACTTCGTCTGGACCAATCGTTCCAAGCAG 
AGCCTCAGCCTCGATCTCAAGCAGGCCGAGGCGCTGCCGTTGCTGGAGAAGCTGCTGGCCGGCGCCGACGTG 
CTGGTGCAGAACCTCGCGCCGGGCGCCGCCGCGCGCCTGGGCCTGTCCTACGAggCGTTGCGCGAGCGCTTC 
CCGCGACTGATCGTCTGCGATATCTCCGGCTACGGCGAAGGCGGTCCCTACGAGAAGAAGAAGGCCTACGAC 
CTGCTGATCCaGAGCGAGGGCGGCTTCCTTTCGGTGACCGGCGGCGCCGGGCCGAACGAGATGGCCAAGGCC 
GGCTGTTCGATCGCCGATATCGCCGCCGGCATGTACGCCTACAGCAGCATCCTCTCGGCCCTGCTGCTGCGC 
GAGCGCACTGGCGAGGGCAGCCGCATCGACGTGTCGATGCTGGAGAGCCTGGTGGAGTGGATGGGCTACCCG 
ATGTACTACGCCTACCAGGACGCGCCGCCACCGCCGCGCGCCGGCGCTTCGCACTCGACCATCTACCCCTAT 
GGGCCATTCCTCGCCGGCGACGGCGGCACGGTGATGCTCGGCCTGCAGAACGAGCGCGAGTGGCGGGCCTTC 
TGCGACAAGGTCCTGCGCCGCCCGGAGCTGGCCGACGACGAACGCTTCTCGGCGAACTTCAAGCGCTCGGCC 
AACCGCGAGGAGCTGCGTGCGCTGATCGTCGAAGCCTTCGCCGCCTTGCCGGCCGCCGAGGTGGTGGCGCGC 
CTGGAACAGGCGCAGATCGCCAACGCCCACGTCAACGACATGGCCGGGGTCTGGGCGCACCCGCAGTTGCAG 
GCGCGGCAACGCTGGACCTCCATCGACAGCCCGGCCGGGCGCCTGCCGGCGTTGTTGCCGCCGGCCAGCAGC 
AGCGCCTTCGTTCCGCGCATGGATGCGGTGCCGGCGCTGGGCGGCGACAGCGACGCGCTGCTTGCCGAACTG 
GGCTGTACCGCGGCCGATATCCAGCGCCTGCGCGCGACCGGAACGGTATGA