ViewGene
Locus Name:
GeneID:
Location:

GeneID:1502
TrivialName: PA14_53470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53470
PAO1 Ortholog Locus:PA0836
Sequence Length:1185
Protein Length:394
Start: 4738824
Stop: 4740008
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04225.1|AE004518_6 (AE004518) probable acetate kinase [Pseudomonas aeruginosa PAO1]
Identities = 394/394 (100%), Positives = 394/394 (100%)
Sequence:
ATGCCCTCACGCAACATACTGGTGATCAACTGCGGCAGTTCGTCGATCAAGTTCGCCCTGGTCAACGAGGCC
CACTCCCTGTTTCCCCTGCACGGCCTCGCCGAGCGCCTGGGCAGCCGCGATGCGGTGCTGCGCTGGAAGCGC
GGCGGCGACAGCGACAGCCTGATGATTCCCAACGCCGACCACCGCGCCGCCCTCGCCCAGTTGCTGCCGATG
GTGCAGAACGCCGCGGGCGGCAAGCTCCACGGCATCGGCCACCGGGTGGTGCATGGCGGCGAGCTGTTCACC
CATGCCACGCGCATCGACGACCGGGTGGTCGAGGCGATCCGGGCCACCGCGCCGCTGGCGCCGCTGCACAAC
CCGGCCAACCTGCAAGGCATCGAGGCAGCGATGACGCTGTTTCCAAAGCTGCCCCACGTCGCCGTGTTCGAC
ACCGCCTTCCACCAGAGCCTGCCGGAGCACGCCTACCGCTACGCCCTGCCGGAAGCCCTCTACCGCGAGCAT
GGCGTACGCCGCTACGGCTTCCACGGCACCAGCCACCGCTACGTCAGCCACCGCGCCGCGGAAATGGCCGGG
TTGGCGGTCGGCGACAGCAGTTGGCTCAGCGCCCACCTTGGCAATGGCAGCTCGACCTGCGCCATCGTCAAC
GGCCAGAGCCTCGACACCAGCATGGGCCTGACCCCGCTGGAAGGCCTGGTAATGGGCACCCGCAGCGGCGAC
GTCGACCCCAACCTGCACAGCCACCTGGCGCGGACCCTGGGCTGGAGCCTGGAGCGCATCGACTCGATGCTG
AACAACGAAAGCGGCCTGCTCGGCCTCTCCGACCTGTCCAACGACATGCGCACCCTGGAGCAGGAGCGCGAG
CAGGGCCACCCCGGCGCGGCCCTGGCGATCGAGGTGTTCTGCTACCGCCTGGCCAAGTCCCTGGCGGCGATG
AGCTGCGCCCTGCCGCAACTGGACGGGGTGATCTTCACCGGTGGCATCGGCGAGAACTCGCCGCTGGTGCGC
GCCAAGACCGCCGCCCACCTGCGGCTGTTCGACCTGCGCCTCGACCAGGAGGCCAACGCCCGCTGCGTGCGC
GGCGTCGCCGGGCCGATCCAGGCCGCGGGGCATCCGCGGGTACTGGTGATCCCGACCAACGAAGAGCGGCAG
ATCGCCCTCGACACGCTGGCCCTGCTCGACTGA
Translation:
MPSRNILVINCGSSSIKFALVNEAHSLFPLHGLAERLGSRDAVLRWKRGGDSDSLMIPNADHRAALAQLLPM
VQNAAGGKLHGIGHRVVHGGELFTHATRIDDRVVEAIRATAPLAPLHNPANLQGIEAAMTLFPKLPHVAVFD
TAFHQSLPEHAYRYALPEALYREHGVRRYGFHGTSHRYVSHRAAEMAGLAVGDSSWLSAHLGNGSSTCAIVN
GQSLDTSMGLTPLEGLVMGTRSGDVDPNLHSHLARTLGWSLERIDSMLNNESGLLGLSDLSNDMRTLEQERE
QGHPGAALAIEVFCYRLAKSLAAMSCALPQLDGVIFTGGIGENSPLVRAKTAAHLRLFDLRLDQEANARCVR
GVAGPIQAAGHPRVLVIPTNEERQIALDTLALLD*
AnnotationID:1511GeneID:1502
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 14:02:55
Gene Name:
Confidence Code:3
GeneProduct:probable acetate kinase
Cell Localization:()
Synonyms:PA0836, ackA, tdcD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0282, pfam00871
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0282, ackA, Acetate kinase [Energy production and conversion]. Score: 525, 9e-150
pfam00871, Acetate_kinase, Acetokinase family. Score: 415, 9e-117






   
Genomic Context:






   
Comment:


















    ReferenceID:3007




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20152




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1502
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2682
                           PA0836_tr
                           translation of PA0836
                           394
                           99.99
                           99.99
                           0
                           2035.0
     

     
     
84607
                           gb|AAG04225.1|AE004518_6
                           (AE004518) probable acetate kinase [Pseudomonas aeruginosa PAO1]
                           394
                           99.99
                           99.99
                           0
                           2035.0
     

     
     
84608
                           gb|AAF12139.1|AE002089_2
                           (AE002089) acetate kinase [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           401
                           54.11
                           67.33
                           10
                           1066.0
     

     
     
84611
                           gb|AAN75023.1|
                           (AY150801) AckA [Rhodospirillum rubrum]
                           406
                           51.72
                           63.79
                           13
                           974.0
     

     
     
84609
                           gb|AAQ59206.1|
                           (AE016915) acetate kinase [Chromobacterium violaceum ATCC 12472]
                           398
                           51.50
                           66.58
                           5
                           1008.0
     

     






      

          
GC ORFID: 44504How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0836Glimmer Score: 

          
Start: 215083Stop: 213899

          
Length: 1185


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0836 translation of PA0836Homolog Bit Score 788.0

          
Other Homologs:  t_PA0836 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCTCACGCAACATACTGGTGATCAACTGCGGCAGTTCGTCGATCAAGTTCGCCCTGGTCAACGAGGCC 
CACTCCCTGTTTCCCCTGCACGGCCTCGCCGAGCGCCTGGGCAGCCGCGATGCGGTGCTGCGCTGGAAGCGC 
GGCGGCGACAGCGACAGCCTGATGATTCCCAACGCCGACCACCGCGCCGCCCTCGCCCAGTTGCTGCCGATG 
GTGCAGAACGCCGCGGGCGGCAAGCTCCACGGCATCGGCCACCGGGTGGTGCATGGCGGCGAGCTGTTCACC 
CATGCCACGCGCATCGACGACCGGGTGGTCGAGGCGATCCGGGCCACCGCGCCGCTGGCGCCGCTGCACAAC 
CCGGCCAACCTGCAAGGCATCGAGGCAGCGATGACGCTGTTTCCAAAGCTGCCCCACGTCGCCGTGTTCGAC 
ACCGCCTTCCACCAGAGCCTGCCGGAGCACGCCTACCGCTACGCCCTGCCGGAAGCCCTCTACCGCGAGCAT 
GGCGTACGCCGCTACGGCTTCCACGGCACCAGCCACCGCTACGTCAGCCACCGCGCCGCGGAAATGGCCGGG 
TTGGCGGTCGGCGACAGCAGTTGGCTCAGCGCCCACCTTGGCAATGGCAGCTCGACCTGCGCCATCGTCAAC 
GGCCAGAGCCTCGACACCAGCATGGGCCTGACCCCGCTGGAAGGCCTGGTAATGGGCACCCGCAGCGGCGAC 
GTCGACCCCAACCTGCACAGCCACCTGGCGCGGACCCTGGGCTGGAGCCTGGAGCGCATCGACTCGATGCTG 
AACAACGAAAGCGGCCTGCTCGGCCTCTCCGACCTGTCCAACGACATGCGCACCCTGGAGCAGGAGCGCGAG 
CAGGGCCACCCCGGCGCGGCCCTGGCGATCGAGGTGTTCTGCTACCGCCTGGCCAAGTCCCTGGCGGCGATG 
AGCTGCGCCCTGCCGCAACTGGACGGGGTGATCTTCACCGGTGGCATCGGCGAGAACTCGCCGCTGGTGCGC 
GCCAAGACCGCCGCCCACCTGCGGCTGTTCGACCTGCGCCTCGACCAGGAGGCCAACGCCCGCTGCGTGCGC 
GGCGTCGCCGGGCCGATCCAGGCCGCGGGGCATCCGCGGGTACTGGTGATCCCGACCAACGAAGAGCGGCAG 
ATCGCCCTCGACACGCTGGCCCTGCTCGACTGA