ViewGene
Locus Name:
GeneID:
Location:

GeneID:1501
TrivialName: PA14_20520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20520
PAO1 Ortholog Locus:
Sequence Length:2712
Protein Length:903
Start: 1763497
Stop: 1766208
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05846.1|AE004673_6 (AE004673) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 357/362 (98%), Positives = 361/362 (99%)
Sequence:
ATGCGCATCCCCCCATACTTCCCCCGTCTCGGCGCCCTCGCCCTGGCCTGCGCCCTGGCCCTGCCCGCGCAG
GCGGCCGAGCGCGCCTGGAGCTACAGCTACAACGCCCTCGGCCTGATCGAGCGCGCCGACGGTCCGCGCACC
GATGTGCAGGACGTCACCCTCTATGCCTACGACAGTCGCGGCAACCTGACCCAGGTGACCAACGCCCTCGGC
CAGGTCACCCGCCTCGGCGACTATGACGAGCGCGGCAAGCCCGGCAGCATCACCGATGCCAACGGCGTCACC
AGCAGCCTCGCCTACACCGGCGTCGACGGCTGGCTGGCCTCCGTCAGCACCGCCGGCAGCACCACCCGCTTC
GACTACGACGCGGTCGGCCAGATCACCCGCGTCACCCGCGGCGACGGCAGTTGGCTGAGCTACGAATACGAC
GACGCACGGCGGCTGGTGGCGATCGGCAACAACCTCGGCGAACGCCTCGAATACGACGTCGACACCAAGGGC
AATCGCACCGCCCAGCGCATCAAGGACGCCAGCGGCAGCCTGGTGCGCCAGCAGCAATGGGCCTACGACGAG
CTTGGCCGGCTGCTCCGTGCGGTCGGCGCCGGCGGCCAGACACGCAGCTTCGCCTACGACCTCAACGACAAT
CCGGTCGGCGAAACCAACCCGCGCCAGTTCGCCCACAGCCAGGCCTTCGACGCCCTCGACCGGCTGGTCGGC
CAGAGCGATCCTCTCGGCGGCAAGACCCAACTCGCCTACGACGCCCAGGACAACCTCACCGAGGTCAAGGAC
CCGCGCGGCGTCACCACCCGCTACGAATACGACGGCCTCGGCAACCTGACCCGACTGGTCAGCCCGGACAGC
GGCACCACCACCTTCGAGCACGACGCCGCCGGCAACGTCATCCGCCGCACCGACGCTCGCGGTGCGGTCACC
GAGTATCGCTACGACGCCCTCAATCGCCTGATCGAGCGCCACTCGCCGAGCGACCCGAGCCTCGACGTACAG
TACCGCTACGACCTCACCGCCGACGGCAACCAGGGCATCGGCCGCCTGGGCGCCATCGAAGGTGCCCGCGAC
AGCCTGGTGTACCGCTACGACGAGCGCGGCAACCTGGTCGAGCAGGTACGCAGCATCCGCCTCGACCAGCAG
ACCCTGCTCGACCGCGTGACCTACCGCTACGACGCGGCCAACCAACTGCTGGAGATCGGCTACCCCTCCGGC
CTCGCCATCGGCTACCCGCGCAACGCCGGCGGCCAGGTCGCCAGCGTGACCCTGGCAGTAGGCGACAAGGCG
CCGAGCACCCTGGTCGGGCAGATCGCCTACCTGCCCTTCGGCCCGCTGCTGCGCCTGACCTGGGGCAACGGC
ATCACTCTCAGCCGCGAGTACGACCAGGACTACCAACTGCTGCGGCAGAAGGTCGGCCCCTGGCAGAGCGAC
TACCAGCACGATGCCAATGGCAATATCCAGCAGCACCACCACAGCCTCTGGGGCACCCTGGACTACCAGTAC
GACCCGCTGGACCGCCTGACCGAGGAACGCGGCGTCCAGGGCGGGCGCAGCTATGCCTACGACGCGGTCGGC
AACCGCACCCAACGCAGCGACAACCCCGCCTCAGGCGGCACCGCCAGCAGCCAGGACTACCAGTACGCGCCC
GACAGCAACCGATTGACCGCCATCGGCGCGCAAGCGGTGACCAGCGACGCCGCCGGCAACCTCACCCAGGAC
CGCGCCGCGCGCAAACTGGCCTACGACGCCCAGGGCCGCCTGCAAAGCGTCAGCCTCGACGGCCAGCAGGTC
GCCGAATACCGCTACAACGCCCTCGGCCAGCGCATCGTCAAGCTCACCCCCGAGAGCATCACCACCTACCTC
TACGGTCCCGACGGCCAGTTGCTCGGCGAAGCCGAACACGACGGCAGCGGCCGGAAACTGCGAGCCCAGTAC
TACCTGTGGCTGGACAGCCTGCCGCTGGCCACCATCGACGCCGACTACGACGCCCAGGGCAAGGTCGGCAAC
CCGACCCTGCTCTACCTCCATGGCGACCACCTCGACACCCCGCGCCTGGCCACCGACGCCAGCGGCCAGATC
GCCTGGCAGTGGCAGTCCGACGCCTTCGGCCGCGGCGAAGCGCTGAGCCAGGGCAGCACCCAGGTCAACCTG
CGCTTCCCCGGGCAGTACTACGATGCGGAAAGCGGGCTGCACTACAACTACTTCCGCGACTATGATCCGGAG
ACTGGGCGGTATGTGGAGAGTGATCCGATTGGGTTGGCAGGAGGACTTAATACATATGTATATGTCGAAGGA
AACCCCCTTGCCTATGTAGATGAATGGGGGCATTCAAAAACCAATGGAAAGCATGCAAACAAATCAAGCCCA
ATGACAGTGGGCGACTTTAACAAGAACTCTGACCCTGCCAAGATACAAGAAGCAATCAGAGAGGCCGAAACC
AATGGGAAAAACGCACATGCAAAAGCACTCAAGGGACTACTGAAAGTAATTAAACGTACTAAAAGCCTAACC
CCGCATGGTGTTATAGAGGACATCCTGGAAAATCTATGTGAATCCCATCCTGAGGAACCGGCCTGCAAAATA
TTTACTCCACCTCCCGCTATAGTTTGGTGCAAAGAAGGAGAAACTTCGCCTCCCTTACCCCCTATGTCCAGT
TTAAGTTCCCCGGACCGACCAGAAATTATAGATCTTGGCCAGCTATAA
Translation:
MRIPPYFPRLGALALACALALPAQAAERAWSYSYNALGLIERADGPRTDVQDVTLYAYDSRGNLTQVTNALG
QVTRLGDYDERGKPGSITDANGVTSSLAYTGVDGWLASVSTAGSTTRFDYDAVGQITRVTRGDGSWLSYEYD
DARRLVAIGNNLGERLEYDVDTKGNRTAQRIKDASGSLVRQQQWAYDELGRLLRAVGAGGQTRSFAYDLNDN
PVGETNPRQFAHSQAFDALDRLVGQSDPLGGKTQLAYDAQDNLTEVKDPRGVTTRYEYDGLGNLTRLVSPDS
GTTTFEHDAAGNVIRRTDARGAVTEYRYDALNRLIERHSPSDPSLDVQYRYDLTADGNQGIGRLGAIEGARD
SLVYRYDERGNLVEQVRSIRLDQQTLLDRVTYRYDAANQLLEIGYPSGLAIGYPRNAGGQVASVTLAVGDKA
PSTLVGQIAYLPFGPLLRLTWGNGITLSREYDQDYQLLRQKVGPWQSDYQHDANGNIQQHHHSLWGTLDYQY
DPLDRLTEERGVQGGRSYAYDAVGNRTQRSDNPASGGTASSQDYQYAPDSNRLTAIGAQAVTSDAAGNLTQD
RAARKLAYDAQGRLQSVSLDGQQVAEYRYNALGQRIVKLTPESITTYLYGPDGQLLGEAEHDGSGRKLRAQY
YLWLDSLPLATIDADYDAQGKVGNPTLLYLHGDHLDTPRLATDASGQIAWQWQSDAFGRGEALSQGSTQVNL
RFPGQYYDAESGLHYNYFRDYDPETGRYVESDPIGLAGGLNTYVYVEGNPLAYVDEWGHSKTNGKHANKSSP
MTVGDFNKNSDPAKIQEAIREAETNGKNAHAKALKGLLKVIKRTKSLTPHGVIEDILENLCESHPEEPACKI
FTPPPAIVWCKEGETSPPLPPMSSLSSPDRPEIIDLGQL*
AnnotationID:1510GeneID:1501
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 16:04:28
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
40% identical to PA2458, but is almost 2.5X as long as PA2458.
NOTE: GeneID = 1665 is 40.8% idenitical to PA2458 and also 2.5X as long as PA2458.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3005




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20150




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1501
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2681
                           PA2458_tr
                           translation of PA2458
                           903
                           39.97
                           40.53
                           530
                           1855.0
     

     
     
84604
                           gb|AAG05846.1|AE004673_6
                           (AE004673) hypothetical protein PA2458 [Pseudomonas aeruginosa PAO1]
                           903
                           39.86
                           40.53
                           530
                           1852.0
     

     
     
84605
                           emb|CAD17600.1|
                           (AL646078) PUTATIVE RSH-RELATED PROTEIN [Ralstonia solanacearum]
                           988
                           10.42
                           14.27
                           754
                           332.0
     

     
     
84606
                           gb|AAQ58914.1|
                           (AE016914) probable rhs-related transmembrane protein related [Chromobacterium violaceum ATCC 12472]
                           968
                           8.36
                           11.46
                           751
                           244.0
     

     






      

          
GC ORFID: 44503How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold7_revised_gene7452Glimmer Score: 

          
Start: 3190435Stop: 3187724

          
Length: 2712


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold7_revised_gene7452 related to: gi|15597654|ref|NP_251148.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||G83338 hypothetical protein PA2458 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05846.1|AE004673_6 (Homolog Bit Score 788.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7452 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCATCCCCCCATACTTCCCCCGTCTCGGCGCCCTCGCCCTGGCCTGCGCCCTGGCCCTGCCCGCGCAG 
GCGGCCGAGCGCGCCTGGAGCTACAGCTACAACGCCCTCGGCCTGATCGAGCGCGCCGACGGTCCGCGCACC 
GATGTGCAGGACGTCACCCTCTATGCCTACGACAGTCGCGGCAACCTGACCCAGGTGACCAACGCCCTCGGC 
CAGGTCACCCGCCTCGGCGACTATGACGAGCGCGGCAAGCCCGGCAGCATCACCGATGCCAACGGCGTCACC 
AGCAGCCTCGCCTACACCGGCGTCGACGGCTGGCTGGCCTCCGTCAGCACCGCCGGCAGCACCACCCGCTTC 
GACTACGACGCGGTCGGCCAGATCACCCGCGTCACCCGCGGCGACGGCAGTTGGCTGAGCTACGAATACGAC 
GACGCACGGCGGCTGGTGGCGATCGGCAACAACCTCGGCGAACGCCTCGAATACGACGTCGACACCAAGGGC 
AATCGCACCGCCCAGCGCATCAAGGACGCCAGCGGCAGCCTGGTGCGCCAGCAGCAATGGGCCTACGACGAG 
CTTGGCCGGCTGCTCCGTGCGGTCGGCGCCGGCGGCCAGACACGCAGCTTCGCCTACGACCTCAACGACAAT 
CCGGTCGGCGAAACCAACCCGCGCCAGTTCGCCCACAGCCAGGCCTTCGACGCCCTCGACCGGCTGGTCGGC 
CAGAGCGATCCTCTCGGCGGCAAGACCCAACTCGCCTACGACGCCCAGGACAACCTCACCGAGGTCAAGGAC 
CCGCGCGGCGTCACCACCCGCTACGAATACGACGGCCTCGGCAACCTGACCCGACTGGTCAGCCCGGACAGC 
GGCACCACCACCTTCGAGCACGACGCCGCCGGCAACGTCATCCGCCGCACCGACGCTCGCGGTGCGGTCACC 
GAGTATCGCTACGACGCCCTCAATCGCCTGATCGAGCGCCACTCGCCGAGCGACCCGAGCCTCGACGTACAG 
TACCGCTACGACCTCACCGCCGACGGCAACCAGGGCATCGGCCGCCTGGGCGCCATCGAAGGTGCCCGCGAC 
AGCCTGGTGTACCGCTACGACGAGCGCGGCAACCTGGTCGAGCAGGTACGCAGCATCCGCCTCGACCAGCAG 
ACCCTGCTCGACCGCGTGACCTACCGCTACGACGCGGCCAACCAACTGCTGGAGATCGGCTACCCCTCCGGC 
CTCGCCATCGGCTACCCGCGCAACGCCGGCGGCCAGGTCGCCAGCGTGACCCTGGCAGTAGGCGACAAGGCG 
CCGAGCACCCTGGTCGGGCAGATCGCCTACCTGCCCTTCGGCCCGCTGCTGCGCCTGACCTGGGGCAACGGC 
ATCACTCTCAGCCGCGAGTACGACCAGGACTACCAACTGCTGCGGCAGAAGGTCGGCCCCTGGCAGAGCGAC 
TACCAGCACGATGCCAATGGCAATATCCAGCAGCACCACCACAGCCTCTGGGGCACCCTGGACTACCAGTAC 
GACCCGCTGGACCGCCTGACCGAGGAACGCGGCGTCCAGGGCGGGCGCAGCTATGCCTACGACGCGGTCGGC 
AACCGCACCCAACGCAGCGACAACCCCGCCTCAGGCGGCACCGCCAGCAGCCAGGACTACCAGTACGCGCCC 
GACAGCAACCGATTGACCGCCATCGGCGCGCAAGCGGTGACCAGCGACGCCGCCGGCAACCTCACCCAGGAC 
CGCGCCGCGCGCAAACTGGCCTACGACGCCCAGGGCCGCCTGCAAAGCGTCAGCCTCGACGGCCAGCAGGTC 
GCCGAATACCGCTACAACGCCCTCGGCCAGCGCATCGTCAAGCTCACCCCCGAGAGCATCACCACCTACCTC 
TACGGTCCCGACGGCCAGTTGCTCGGCGAAGCCGAACACGACGGCAGCGGCCGGAAACTGCGAGCCCAGTAC 
TACCTGTGGCTGGACAGCCTGCCGCTGGCCACCATCGACGCCGACTACGACGCCCAGGGCAAGGTCGGCAAC 
CCGACCCTGCTCTACCTCCATGGCGACCACCTCGACACCCCGCGCCTGGCCACCGACGCCAGCGGCCAGATC 
GCCTGGCAGTGGCAGTCCGACGCCTTCGGCCGCGGCGAAGCGCTGAGCCAGGGCAGCACCCAGGTCAACCTG 
CGCTTCCCCGGGCAGTACTACGATGCGGAAAGCGGGCTGCACTACAACTACTTCCGCGACTATGATCCGGAG 
ACTGGGCGGTATGTGGAGAGTGATCCGATTGGGTTGGCAGGAGGACTTAATACATATGTATATGTCGAAGGA 
AACCCCCTTGCCTATGTAGATGAATGGGGGCATTCAAAAACCAATGGAAAGCATGCAAACAAATCAAGCCCA 
ATGACAGTGGGCGACTTTAACAAGAACTCTGACCCTGCCAAGATACAAGAAGCAATCAGAGAGGCCGAAACC 
AATGGGAAAAACGCACATGCAAAAGCACTCAAGGGACTACTGAAAGTAATTAAACGTACTAAAAGCCTAACC 
CCGCATGGTGTTATAGAGGACATCCTGGAAAATCTATGTGAATCCCATCCTGAGGAACCGGCCTGCAAAATA 
TTTACTCCACCTCCCGCTATAGTTTGGTGCAAAGAAGGAGAAACTTCGCCTCCCTTACCCCCTATGTCCAGT 
TTAAGTTCCCCGGACCGACCAGAAATTATAGATCTTGGCCAGCTATAA