ViewGene

Locus Name:
GeneID:
Location:

GeneID:1500
TrivialName: PA14_67250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67250
PAO1 Ortholog Locus:PA5092
Sequence Length:1209
Protein Length:402
Start: 6006375
Stop: 6005167
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08477.1|AE004922_2 (AE004922) imidazolone-5-propionate hydrolase HutI [Pseudomonas aeruginosa PAO1]
Identities = 396/402 (98%), Positives = 398/402 (99%)
Sequence:
ATGAAACGACTCTGGCAGCATTGCCATGCCGCCACCCTCAAGGGCGGCAAGTACTCGATTGTCGAGGACGCC
GCCCTGGTCACCGACGGTCCGCTGATCCACTGGATCGGCCCGCGCGCCGAACTGCCGCCCGACGACTACGCC
GAACGCATCGACCTCGATGGCGCCTGGCTGACCCCGGGGTTGATCGACTGCCACACCCACGCGGTGTTCGGC
GGCAACCGCAGCGGCGAATTCGAGCAGCGCCTGGAGGGCGTCAGCTACGCCGAGATCGCCGCCGCCGGCGGC
GGTATCGCCAGCACCGTACGCGCCACCCGCGAGGCCAGCGAGGAAGAATTGCTGGCCAGCGCGCGCAAGCGC
CTGGACCCCTTGCTGCGCGACGGCGTGACGGCGCTGGAGATCAAGTCCGGCTACGGCCTCGACCTGGCCAGC
GAACGCAAGATGCTACGAGTCATCCGCCGCCTCGGCGAACGCCTGCCGGCGACCGTGCGCAGCACCTGCCTG
GCCGCCCATGCGCTACCGCCGGAATACGCCGGGCGCGCCGACGACTACATCGAGCATATCTGCTCGACGATG
CTCCCCGCGCTGGCCGGAGAGGGACTGGTGGACGCGGTGGACGCCTTCTGCGAGCACCTGGCGTTTTCCCCG
GCGCAGGTCGAGCGGGTATTCATCGCCGCCCGCGAGCTGGGCCTGCCGGTGAAGCTGCACGCCGAGCAGCTA
TCCTCGCTGCACGGTTCCAGCCTGGCGGCGCGCTACCGGGCTTTGTCGGCCGACCATCTGGAGTACATGACC
GAGGACGACGCCCGGTCCATGGGCGAGGCGGGCACCGTCGCGGTGCTGCTGCCGGGCGCCTTCTACCTGTTG
CGCGAGACCCAGCTGCCGCCGATCGATGCCCTGCGCCGGCACGGCGTGGCCATGGCCATTGCCAGCGATCTC
AATCCCGGCACCTCGCCAGCGCTGTCGTTGCGCCTGATGCTGAACATGGCCTGTACCCTGTTCCGCCTGACC
CCGGAGGAGGCGCTGGCCGGCGTCACCCTGCACGCCGCCCGGGCGCTGGGGCTGGAAGCCCGCCACGGCAGC
CTGGAGGTTGGCAAGCTGGCCGACTTCGTCGCCTGGGACATCGAGCGTCCGGCGGAGCTGGCCTACTGGCTG
GGCGGCGATCTGCCGAAACGCGTCATTCGCCACGCCGAGGAGGTATACCGTGGATGA
Translation:
MKRLWQHCHAATLKGGKYSIVEDAALVTDGPLIHWIGPRAELPPDDYAERIDLDGAWLTPGLIDCHTHAVFG
GNRSGEFEQRLEGVSYAEIAAAGGGIASTVRATREASEEELLASARKRLDPLLRDGVTALEIKSGYGLDLAS
ERKMLRVIRRLGERLPATVRSTCLAAHALPPEYAGRADDYIEHICSTMLPALAGEGLVDAVDAFCEHLAFSP
AQVERVFIAARELGLPVKLHAEQLSSLHGSSLAARYRALSADHLEYMTEDDARSMGEAGTVAVLLPGAFYLL
RETQLPPIDALRRHGVAMAIASDLNPGTSPALSLRLMLNMACTLFRLTPEEALAGVTLHAARALGLEARHGS
LEVGKLADFVAWDIERPAELAYWLGGDLPKRVIRHAEEVYRG*
AnnotationID:1509GeneID:1500
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 12:12:33
Gene Name:hutI
Confidence Code:2
GeneProduct:imidazolone-5-propionate hydrolase HutI
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:midazolonepropionase
Functional Category Confidence Code:5
COGs:COG1228
Secondary Functional Category(ies):Secondary metabolites biosynthesis, transport, and catabolism
EC Number:3.5.2.7
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70595.1|AE016702_4 (AE016792) imidazolonepropionase [Pseudomonas putida KT2440]
          Length = 401

 Score =  652 bits (1683), Expect = 0.0
 Identities = 321/399 (80%), Positives = 352/399 (88%)

>gb|AAO58703.1| (AE016875) imidazolonepropionase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 401

 Score =  630 bits (1625), Expect = e-180
 Identities = 311/398 (78%), Positives = 349/398 (87%)

>gb|AAB86968.1| (AF032970) imidazolone propionate hydrolase [Pseudomonas putida]
          Length = 400

 Score =  538 bits (1387), Expect = e-152
 Identities = 280/408 (68%), Positives = 309/408 (75%), Gaps = 19/408 (4%)
Structural Features:
COG1228, HutI, Imidazolonepropionase and related amidohydrolases 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 406 residues,  97.8% aligned
Score =  356 bits (914), Expect = 3e-99
Identities = 171/404 (42%), Positives = 213/404 (52%), Gaps = 13/404 (3%)
Genomic Context:
Comment:
ReferenceID:3003
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20148
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34965
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1500_cdd.html
URL:
ReferenceID:35817
Author/Investigator(s): Yoshida K, Sano H, Seki S, Oda M, Fujimura M, Fujita Y.
Title: Cloning and sequencing of a 29 kb region of the Bacillus subtilis genome containing the hut and wapA loci.
PubMed: 7704263
MedLine:
Source:
Microbiology. 1995 Feb;141 ( Pt 2):337-43.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7704263
Homologs By Global Alignment
Gene ID:1500

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2680 PA5092_tr translation of PA5092 402 98.50 99.00 0 2034.0
84568 gb|AAG08477.1|AE004922_2 (AE004922) imidazolone-5-propionate hydrolase HutI [Pseudomonas aeruginosa PAO1] 402 98.50 99.00 0 2034.0
84569 gb|AAN70595.1|AE016702_4 (AE016792) imidazolonepropionase [Pseudomonas putida KT2440] 402 79.85 87.56 1 1681.0
84570 gb|AAO58703.1| (AE016875) imidazolonepropionase [Pseudomonas syringae pv. tomato str. DC3000] 402 77.36 86.81 1 1618.0
84571 gb|AAB86968.1| (AF032970) imidazolone propionate hydrolase [Pseudomonas putida] 416 67.30 75.72 30 1403.0
GC ORFID: 44502How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5092Glimmer Score:
Start: 5270060Stop: 5268852
Length: 1209
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5092 translation of PA5092Homolog Bit Score 788.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6906 (ORF: BLASTX 633.0), t_PA5092 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACGACTCTGGCAGCATTGCCATGCCGCCACCCTCAAGGGCGGCAAGTACTCGATTGTCGAGGACGCC
GCCCTGGTCACCGACGGTCCGCTGATCCACTGGATCGGCCCGCGCGCCGAACTGCCGCCCGACGACTACGCC
GAACGCATCGACCTCGATGGCGCCTGGCTGACCCCGGGGTTGATCGACTGCCACACCCACGCGGTGTTCGGC
GGCAACCGCAGCGGCGAATTCGAGCAGCGCCTGGAGGGCGTCAGCTACGCCGAGATCGCCGCCGCCGGCGGC
GGTATCGCCAGCACCGTACGCGCCACCCGCGAGGCCAGCGAGGAAGAATTGCTGGCCAGCGCGCGCAAGCGC
CTGGACCCCTTGCTGCGCGACGGCGTGACGGCGCTGGAGATCAAGTCCGGCTACGGCCTCGACCTGGCCAGC
GAACGCAAGATGCTACGAGTCATCCGCCGCCTCGGCGAACGCCTGCCGGCGACCGTGCGCAGCACCTGCCTG
GCCGCCCATGCGCTACCGCCGGAATACGCCGGGCGCGCCGACGACTACATCGAGCATATCTGCTCGACGATG
CTCCCCGCGCTGGCCGGAGAGGGACTGGTGGACGCGGTGGACGCCTTCTGCGAGCACCTGGCGTTTTCCCCG
GCGCAGGTCGAGCGGGTATTCATCGCCGCCCGCGAGCTGGGCCTGCCGGTGAAGCTGCACGCCGAGCAGCTA
TCCTCGCTGCACGGTTCCAGCCTGGCGGCGCGCTACCGGGCTTTGTCGGCCGACCATCTGGAGTACATGACC
GAGGACGACGCCCGGTCCATGGGCGAGGCGGGCACCGTCGCGGTGCTGCTGCCGGGCGCCTTCTACCTGTTG
CGCGAGACCCAGCTGCCGCCGATCGATGCCCTGCGCCGGCACGGCGTGGCCATGGCCATTGCCAGCGATCTC
AATCCCGGCACCTCGCCAGCGCTGTCGTTGCGCCTGATGCTGAACATGGCCTGTACCCTGTTCCGCCTGACC
CCGGAGGAGGCGCTGGCCGGCGTCACCCTGCACGCCGCCCGGGCGCTGGGGCTGGAAGCCCGCCACGGCAGC
CTGGAGGTTGGCAAGCTGGCCGACTTCGTCGCCTGGGACATCGAGCGTCCGGCGGAGCTGGCCTACTGGCTG
GGCGGCGATCTGCCGAAACGCGTCATTCGCCACGCCGAGGAGGTATACCGTGGATGA