ViewGene
Locus Name:
GeneID:
Location:

GeneID:150
TrivialName: PA14_48160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48160
PAO1 Ortholog Locus:PA1243
Sequence Length:2577
Protein Length:858
Start: 4286772
Stop: 4289348
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04632.1|AE004553_9 (AE004553) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
Identities = 850/858 (99%), Positives = 851/858 (99%)
Sequence:
ATGGCACAGCCTTTCACCATCGAACCGGACCCGAACACCCTCGACCATCCACCGGCCTTCCTGGCCAACGGA
GGAGCGGTCGGGAAACTGTTGCTCAGCCTCGACGCGGCCAGTTCGCCCCTCGGCCCGCCGGACGCCTGGTCG
GCGAGCCTGAAGACGACGATGGCCACGCTGCTGCCGGCCAAGGCGCAGATCGTGCTGTTCTGGGGCGCGGAA
TTCGTCGCCCTGTACAACGATGCCTACGCGCCGAGCATCGGCGACAAGCATCCGCGCGCCCTCGGCCGGCCG
GCGATAGAGAACTGGCGGGAGCTGTGGGATGACCTCGAACCGCTGCTGCGCGGGGTGTACGAGACCGGTGAA
ACCTTCGCGGCAAAGGATCGGCCCTTCTACATCGAACGCCATGGACGCGGCGAGACGGTCTATTTCGACGTG
TCCTATTCGGCGGTGCGGGAAACCGACGGTTCCGTCGGCGGCGTGCTGTGCATCGTCACCGAGACCACCGAG
CGGGTGCGTTTCGAACGCCGCCAGGCGTTCCTCCTGGAACTGGGCCAGACCCTGCCGTCCCTGGCCGATCCC
CTGGAAATCGAAGCCACCGCCCTGCGCCGGCTCGGCGAGGAGCTGGGCGCGTCGCGGATATTCTTCGGCGAG
GACAACGGCGACGGCATGACCTTCCAGGTCCATCGCGACTATCTCCACGACGGCCGCTCGGCGGTCGGTCGG
CATCGCTACCTGGCGTTCGGCGCCACCCTGTCCGGCGAACTGCATGCCGGACGCAGCGTGGCGCGGGAAGAC
CTCGCCGGGGAGCGCGGCATGAGTCTCGACGAGGCGGCGAGCCGCGCGCGCCTGGGGCTGGGCGCCACGCTG
CACGTCCCGGTGCTGCGCCACGGCCGGCTGGAGGCGCTGCTGGCGATCCACTTCGCCCATCCGCAGGCGCTC
GGCGAAGATTCGCGCCGCCTGGCGGAGGAAGCCGCCAAGCTGGCCTGGACCTCGCTCACCCATGCCCGCGCG
GAGCTGGCGCTGCGCACCAGTTCCGCGCAACTGGCGGCGATGTTCGACCAGGCCAGCGCGGGCATCGCGGTA
TGCGACCGGAACTGGCGCTTCACCCGGGTCAACGATCGCTACTGCGAGATCGCCGGCCGTTCGCGCGAGACC
CTGCTCGGCCTGCGCATGCAGGACATCCTCGACCCCGCCGACTTCGCCCTCCCTGCGGCGCCAGGCGGAGCG
ACCGGCGCGGCGTTCGAGATGAGCGGCCGCTACGTTCGCCCCGACGGCGATACGGTGTGGGTGCAGAACCAG
GTCACGCCGCTGGTGGACGAGCAGCATGCCGCCAGCGGCCTGCTCTGCGTGTGCATGGACATCAGCGCGCGG
GTACGCGCCGAGAACGAGCTGCGCGAACTCAACGAAAGCCTGGAAGAACGTGTCGCGACCATGCTCGCCCAG
CGCGAAAGCGCCCTGGCGCAGCTTCACGAGGCACGCAAGATGGAGATGGTCGGCCAGTTGACCGGCGGCATC
GCCCATGACTTCAACAACCTGCTGACGCCGATCATGGCCTCGCTGGAACTGATCCGCCGGCGGCTCGACGAC
GCCCGCTCCACCGACCTCATCGACGGCGCGCTACAGTCCGCGGAGCGGGCGCGGAACCTCGTCGGCCGCCTG
CTCACCTTCGCTCGCCGGCAAACCCTCAAGCCGCAGGCGGTAGCCCTGCGCGAACTGGTCGAGGGCATGCGC
GACCTGATCGAGCGCTCGCTCGGCCCGACCATCGAGGTCCGTATCGAGATCCCGGAACGCCTGCCTGCGGTG
GTGGTGGATCCGCACCAGTTCGAACTGGCCATCCTCAACCTCGCGGTGAATGCCCGCGACGCCATGGGCGAA
GGCGGCCGCCTGGAAATAGGCGCGCGGACCGACCTGGTGATCGACGGCGCGGTGGACGGTCTCGGCGCCGGC
CGCTACGTGTGCCTGGAAGTCGCCGACAACGGCGGAGGCATGCCCGCCGAGGTGCTGGCCCGCTGCATGGAG
CCGTTCTTTTCCACCAAGGGCGTGGGCAAGGGCACCGGCCTCGGCCTGTCGATGGTCCAGGGCCTGGTCGCC
CAGTCCGGCGGCGGCCTGGGCATCCATTCGGAGATCGGCAAGGGGACCCGGGTGAGCATCTGGCTGCCGATC
ACCGCGGAGCAGACGCAATCCACCGCAGAAAGCTGCCCGGACGCACCGGAAGCGTTGCGGCCGACCCACGTG
CTGCTGGTCGACGACGACAGGATGGTGCGCTACACCACCGCGCTGCTGCTCGGCGATCTCGGCTACCAGGTC
AGCGAGGCGGCGTCGGCGGAGGAAGCCCTGGGCGAGGTCGAGCGCGGCCTGGCGCCCGACCTGCTGGTCACC
GACCATCTCATGGCCGACAAGACCGGCGTGCAGCTTGCCGAGGAACTGCGCCAGCGCTTCCCGCAATTGCCG
GTGCTGGTCATCACCGGCTACGCCAATCTCACGCCCGAGCAACTCAACGGCTTCGAGGTGTTGACCAAGCCG
TTCCGCCACAACGAACTCGCCGAACGCCTCGCCCGGCTGCTGGAAGCCTCGCCGTGA
Translation:
MAQPFTIEPDPNTLDHPPAFLANGGAVGKLLLSLDAASSPLGPPDAWSASLKTTMATLLPAKAQIVLFWGAE
FVALYNDAYAPSIGDKHPRALGRPAIENWRELWDDLEPLLRGVYETGETFAAKDRPFYIERHGRGETVYFDV
SYSAVRETDGSVGGVLCIVTETTERVRFERRQAFLLELGQTLPSLADPLEIEATALRRLGEELGASRIFFGE
DNGDGMTFQVHRDYLHDGRSAVGRHRYLAFGATLSGELHAGRSVAREDLAGERGMSLDEAASRARLGLGATL
HVPVLRHGRLEALLAIHFAHPQALGEDSRRLAEEAAKLAWTSLTHARAELALRTSSAQLAAMFDQASAGIAV
CDRNWRFTRVNDRYCEIAGRSRETLLGLRMQDILDPADFALPAAPGGATGAAFEMSGRYVRPDGDTVWVQNQ
VTPLVDEQHAASGLLCVCMDISARVRAENELRELNESLEERVATMLAQRESALAQLHEARKMEMVGQLTGGI
AHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFARRQTLKPQAVALRELVEGMR
DLIERSLGPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNARDAMGEGGRLEIGARTDLVIDGAVDGLGAG
RYVCLEVADNGGGMPAEVLARCMEPFFSTKGVGKGTGLGLSMVQGLVAQSGGGLGIHSEIGKGTRVSIWLPI
TAEQTQSTAESCPDAPEALRPTHVLLVDDDRMVRYTTALLLGDLGYQVSEAASAEEALGEVERGLAPDLLVT
DHLMADKTGVQLAEELRQRFPQLPVLVITGYANLTPEQLNGFEVLTKPFRHNELAERLARLLEASP*
AnnotationID:160GeneID:150
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 09:09:22
Gene Name:
Confidence Code:3
GeneProduct:putative sensor/response regulator hybrid
Cell Localization:()
Synonyms:PA1243
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00156,cd00075
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL46195.1| (AE008971) two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58 (U. Washington)]
          Length = 620

 Score =  355 bits (912), Expect = 5e-97
 Identities = 205/462 (44%), Positives = 286/462 (61%), Gaps = 18/462 (3%)

>dbj|BAC47443.1| (AP005942) two-component hybrid sensor and regulator
           [Bradyrhizobium japonicum USDA 110]
          Length = 560

 Score =  344 bits (883), Expect = 1e-93
 Identities = 199/428 (46%), Positives = 265/428 (61%), Gaps = 14/428 (3%)








 
Structural Features:
cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score = 84.1 bits (208), Expect = 5e-17
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

cd00075, HATPase_c, Histidine kinase-like ATPases
CD-Length = 103 residues, 100.0% aligned
Score = 75.4 bits (185), Expect = 3e-14
Identities = 44/115 (38%), Positives = 56/115 (48%), Gaps = 15/115 (13%)







   
Genomic Context:






   
Comment:


















    ReferenceID:303




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17445




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37561




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:150_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:150
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
271
                           PA1243_tr
                           translation of PA1243
                           858
                           99.06
                           99.18
                           0
                           4321.0
     

     
     
18108
                           gb|AAG04632.1|AE004553_9
                           (AE004553) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
                           858
                           99.06
                           99.18
                           0
                           4321.0
     

     
     
18110
                           gb|AAK90885.1|
                           (AE007919) AGR_pAT_755p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           927
                           30.09
                           41.96
                           297
                           939.0
     

     
     
18121
                           gb|AAO57165.1|
                           (AE016869) sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           965
                           29.94
                           43.62
                           245
                           792.0
     

     
     
18117
                           gb|AAK25187.1|
                           (AE005986) sensory box histidine kinase/response regulator [Caulobacter crescentus CB15]
                           914
                           29.75
                           40.80
                           239
                           874.0
     

     






      

          
GC ORFID: 43152How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1243Glimmer Score: 

          
Start: 667136Stop: 664560

          
Length: 2577


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1243 translation of PA1243Homolog Bit Score 1669.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene122 (ORF: BLASTX 309.0), t_PA1243 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCACAGCCTTTCACCATCGAACCGGACCCGAACACCCTCGACCATCCACCGGCCTTCCTGGCCAACGGA 
GGAGCGGTCGGGAAACTGTTGCTCAGCCTCGACGCGGCCAGTTCGCCCCTCGGCCCGCCGGACGCCTGGTCG 
GCGAGCCTGAAGACGACGATGGCCACGCTGCTGCCGGCCAAGGCGCAGATCGTGCTGTTCTGGGGCGCGGAA 
TTCGTCGCCCTGTACAACGATGCCTACGCGCCGAGCATCGGCGACAAGCATCCGCGCGCCCTCGGCCGGCCG 
GCGATAGAGAACTGGCGGGAGCTGTGGGATGACCTCGAACCGCTGCTGCGCGGGGTGTACGAGACCGGTGAA 
ACCTTCGCGGCAAAGGATCGGCCCTTCTACATCGAACGCCATGGACGCGGCGAGACGGTCTATTTCGACGTG 
TCCTATTCGGCGGTGCGGGAAACCGACGGTTCCGTCGGCGGCGTGCTGTGCATCGTCACCGAGACCACCGAG 
CGGGTGCGTTTCGAACGCCGCCAGGCGTTCCTCCTGGAACTGGGCCAGACCCTGCCGTCCCTGGCCGATCCC 
CTGGAAATCGAAGCCACCGCCCTGCGCCGGCTCGGCGAGGAGCTGGGCGCGTCGCGGATATTCTTCGGCGAG 
GACAACGGCGACGGCATGACCTTCCAGGTCCATCGCGACTATCTCCACGACGGCCGCTCGGCGGTCGGTCGG 
CATCGCTACCTGGCGTTCGGCGCCACCCTGTCCGGCGAACTGCATGCCGGACGCAGCGTGGCGCGGGAAGAC 
CTCGCCGGGGAGCGCGGCATGAGTCTCGACGAGGCGGCGAGCCGCGCGCGCCTGGGGCTGGGCGCCACGCTG 
CACGTCCCGGTGCTGCGCCACGGCCGGCTGGAGGCGCTGCTGGCGATCCACTTCGCCCATCCGCAGGCGCTC 
GGCGAAGATTCGCGCCGCCTGGCGGAGGAAGCCGCCAAGCTGGCCTGGACCTCGCTCACCCATGCCCGCGCG 
GAGCTGGCGCTGCGCACCAGTTCCGCGCAACTGGCGGCGATGTTCGACCAGGCCAGCGCGGGCATCGCGGTA 
TGCGACCGGAACTGGCGCTTCACCCGGGTCAACGATCGCTACTGCGAGATCGCCGGCCGTTCGCGCGAGACC 
CTGCTCGGCCTGCGCATGCAGGACATCCTCGACCCCGCCGACTTCGCCCTCCCTGCGGCGCCAGGCGGAGCG 
ACCGGCGCGGCGTTCGAGATGAGCGGCCGCTACGTTCGCCCCGACGGCGATACGGTGTGGGTGCAGAACCAG 
GTCACGCCGCTGGTGGACGAGCAGCATGCCGCCAGCGGCCTGCTCTGCGTGTGCATGGACATCAGCGCGCGG 
GTACGCGCCGAGAACGAGCTGCGCGAACTCAACGAAAGCCTGGAAGAACGTGTCGCGACCATGCTCGCCCAG 
CGCGAAAGCGCCCTGGCGCAGCTTCACGAGGCACGCAAGATGGAGATGGTCGGCCAGTTGACCGGCGGCATC 
GCCCATGACTTCAACAACCTGCTGACGCCGATCATGGCCTCGCTGGAACTGATCCGCCGGCGGCTCGACGAC 
GCCCGCTCCACCGACCTCATCGACGGCGCGCTACAGTCCGCGGAGCGGGCGCGGAACCTCGTCGGCCGCCTG 
CTCACCTTCGCTCGCCGGCAAACCCTCAAGCCGCAGGCGGTAGCCCTGCGCGAACTGGTCGAGGGCATGCGC 
GACCTGATCGAGCGCTCGCTCGGCCCGACCATCGAGGTCCGTATCGAGATCCCGGAACGCCTGCCTGCGGTG 
GTGGTGGATCCGCACCAGTTCGAACTGGCCATCCTCAACCTCGCGGTGAATGCCCGCGACGCCATGGGCGAA 
GGCGGCCGCCTGGAAATAGGCGCGCGGACCGACCTGGTGATCGACGGCGCGGTGGACGGTCTCGGCGCCGGC 
CGCTACGTGTGCCTGGAAGTCGCCGACAACGGCGGAGGCATGCCCGCCGAGGTGCTGGCCCGCTGCATGGAG 
CCGTTCTTTTCCACCAAGGGCGTGGGCAAGGGCACCGGCCTCGGCCTGTCGATGGTCCAGGGCCTGGTCGCC 
CAGTCCGGCGGCGGCCTGGGCATCCATTCGGAGATCGGCAAGGGGACCCGGGTGAGCATCTGGCTGCCGATC 
ACCGCGGAGCAGACGCAATCCACCGCAGAAAGCTGCCCGGACGCACCGGAAGCGTTGCGGCCGACCCACGTG 
CTGCTGGTCGACGACGACAGGATGGTGCGCTACACCACCGCGCTGCTGCTCGGCGATCTCGGCTACCAGGTC 
AGCGAGGCGGCGTCGGCGGAGGAAGCCCTGGGCGAGGTCGAGCGCGGCCTGGCGCCCGACCTGCTGGTCACC 
GACCATCTCATGGCCGACAAGACCGGCGTGCAGCTTGCCGAGGAACTGCGCCAGCGCTTCCCGCAATTGCCG 
GTGCTGGTCATCACCGGCTACGCCAATCTCACGCCCGAGCAACTCAACGGCTTCGAGGTGTTGACCAAGCCG 
TTCCGCCACAACGAACTCGCCGAACGCCTCGCCCGGCTGCTGGAAGCCTCGCCGTGA