ViewGene
Locus Name:
GeneID:
Location:

GeneID:1499
TrivialName: PA14_06670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06670
PAO1 Ortholog Locus:PA0511
Sequence Length:1164
Protein Length:387
Start: 584573
Stop: 583410
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03900.1|AE004488_4 (AE004488) heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PAO1]
Identities = 384/387 (99%), Positives = 385/387 (99%)
Sequence:
ATGCTGAGGATCAGCCATTACCTGCGCAGCCTCGCCGAGGACGCGCCGGCGCCGCGCCGCGCCGGCGGCAGG
CGCGCCCCGGTGGTGATCTGGAACCTGCTGCGGCGCTGCAACCTGACCTGCAAGCACTGTTACTCCACCTCC
GCCGACAGCGACTTCCGTGGCGAGCTGGAGACCGCGGAAATCCTTCGCGGCATCGACGACCTGCGCGCCGCC
GGAGTGCGCGTGCTGATCCTCTCCGGCGGCGAACCGCTGATGCACCCGGACCTCTTCGAGATCGCCGCCCAT
GCGCGCCAGGCCGGGATGTTCGTGGCGCTGTCGAGCAACGGTACGCTGATCGACGAAGGCAACATCCAGCGC
GTCGCCGAGGCCCGCTTCGACTACGTCGGCATCAGCCTCGACGGCCTGCGCGAGACCCACGACCGCTTCCGC
CAGAAGCAGGGCAGCTTCGACGCCGCGCTGGCGGCCATGCGCCTGTGCCGCGAGGCGGATATCCGCGTCGGC
ATGCGCACCACCCTGACCGAGGAGAACGCCGCGCAACTACCGGCACTGCTCGACCTGATGCGCGAACTCGAC
GTGCAGAAGTTCTACCTCTCGCACCTCAACTACAGTGGCCGCGGCCGCCGCAGCCGCGCCCTCGACGCCCAC
CACCGGCGCACCCGCGAGGCCCTCGCGCTGCTCTTCGAACGGGCCGACGAGGACATCCGGCAGGGGCGCGAC
AGCGACTTCGTCACCGGCAACAACGACGCCGACGCGATCCTTCTCCTCGACTGGCTCAAGCGCCGCCGCCCG
CAGCAATTGGCGCGTCTCTGCGAGCTGCTGCTGGACTGGGGCGGCAACGCCTCGGGCGAGGGCATCGCCAAC
ATCGACAACACCGGCGAGGTGCATCCGGACAGCTACTGGTGGCACCACAGCGTCGGCAACATCCGCCATCAG
CGCTTCGCCGACTTCTGGTTCGAGCGCCCCGACCCGCTGCTCCTGCAACTGCGCCAGCGCCCGCGACCGGTG
GTCGGGCGCTGCAGCCAATGCCGCTGGCTGGACATCTGCAACGGCAACACCCGCACCCGCGCCTGGGCCGGC
GGAGAACTCTGGGGCGAAGACCCCGGCTGCTACCTCAGCGATCAGGAAATCGGCCTCGAGCGCATCGCGCTG
CACGCCGTCTAA
Translation:
MLRISHYLRSLAEDAPAPRRAGGRRAPVVIWNLLRRCNLTCKHCYSTSADSDFRGELETAEILRGIDDLRAA
GVRVLILSGGEPLMHPDLFEIAAHARQAGMFVALSSNGTLIDEGNIQRVAEARFDYVGISLDGLRETHDRFR
QKQGSFDAALAAMRLCREADIRVGMRTTLTEENAAQLPALLDLMRELDVQKFYLSHLNYSGRGRRSRALDAH
HRRTREALALLFERADEDIRQGRDSDFVTGNNDADAILLLDWLKRRRPQQLARLCELLLDWGGNASGEGIAN
IDNTGEVHPDSYWWHHSVGNIRHQRFADFWFERPDPLLLQLRQRPRPVVGRCSQCRWLDICNGNTRTRAWAG
GELWGEDPGCYLSDQEIGLERIALHAV*
AnnotationID:1508GeneID:1499
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 11:11:20
Gene Name:nirJ
Confidence Code:1
GeneProduct:heme d1 biosynthesis protein NirJ
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0535
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0535, Predicted Fe-S oxidoreductases
CD-Length = 347 residues,  97.1% aligned
Score =  205 bits (522), Expect = 7e-54
Identities = 126/362 (34%), Positives = 176/362 (48%), Gaps = 28/362 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3001




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20146




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33819




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1499_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1499
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2679
                           PA0511_tr
                           translation of PA0511
                           387
                           99.22
                           99.48
                           0
                           2040.0
     

     
     
84563
                           gb|AAG03900.1|AE004488_4
                           (AE004488) heme d1 biosynthesis protein NirJ [Pseudomonas aeruginosa PAO1]
                           387
                           99.22
                           99.48
                           0
                           2040.0
     

     
     
84564
                           dbj|BAA12681.1|
                           (D84475) NirJ [Pseudomonas aeruginosa]
                           387
                           99.22
                           99.48
                           0
                           2040.0
     

     
     
84565
                           emb|CAA98151.1|
                           (Z73914) ORF393 protein [Pseudomonas stutzeri]
                           396
                           65.15
                           78.28
                           12
                           1387.0
     

     
     
84566
                           gb|AAM06408.1|
                           (AE011006) coenzyme PQQ synthesis protein E [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
                           405
                           38.51
                           58.27
                           24
                           770.0
     

     






      

          
GC ORFID: 44501How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0511Glimmer Score: 

          
Start: 6385915Stop: 6384752

          
Length: 1164


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0511 translation of PA0511Homolog Bit Score 790.0

          
Other Homologs:  t_PA0511 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAGGATCAGCCATTACCTGCGCAGCCTCGCCGAGGACGCGCCGGCGCCGCGCCGCGCCGGCGGCAGG 
CGCGCCCCGGTGGTGATCTGGAACCTGCTGCGGCGCTGCAACCTGACCTGCAAGCACTGTTACTCCACCTCC 
GCCGACAGCGACTTCCGTGGCGAGCTGGAGACCGCGGAAATCCTTCGCGGCATCGACGACCTGCGCGCCGCC 
GGAGTGCGCGTGCTGATCCTCTCCGGCGGCGAACCGCTGATGCACCCGGACCTCTTCGAGATCGCCGCCCAT 
GCGCGCCAGGCCGGGATGTTCGTGGCGCTGTCGAGCAACGGTACGCTGATCGACGAAGGCAACATCCAGCGC 
GTCGCCGAGGCCCGCTTCGACTACGTCGGCATCAGCCTCGACGGCCTGCGCGAGACCCACGACCGCTTCCGC 
CAGAAGCAGGGCAGCTTCGACGCCGCGCTGGCGGCCATGCGCCTGTGCCGCGAGGCGGATATCCGCGTCGGC 
ATGCGCACCACCCTGACCGAGGAGAACGCCGCGCAACTACCGGCACTGCTCGACCTGATGCGCGAACTCGAC 
GTGCAGAAGTTCTACCTCTCGCACCTCAACTACAGTGGCCGCGGCCGCCGCAGCCGCGCCCTCGACGCCCAC 
CACCGGCGCACCCGCGAGGCCCTCGCGCTGCTCTTCGAACGGGCCGACGAGGACATCCGGCAGGGGCGCGAC 
AGCGACTTCGTCACCGGCAACAACGACGCCGACGCGATCCTTCTCCTCGACTGGCTCAAGCGCCGCCGCCCG 
CAGCAATTGGCGCGTCTCTGCGAGCTGCTGCTGGACTGGGGCGGCAACGCCTCGGGCGAGGGCATCGCCAAC 
ATCGACAACACCGGCGAGGTGCATCCGGACAGCTACTGGTGGCACCACAGCGTCGGCAACATCCGCCATCAG 
CGCTTCGCCGACTTCTGGTTCGAGCGCCCCGACCCGCTGCTCCTGCAACTGCGCCAGCGCCCGCGACCGGTG 
GTCGGGCGCTGCAGCCAATGCCGCTGGCTGGACATCTGCAACGGCAACACCCGCACCCGCGCCTGGGCCGGC 
GGAGAACTCTGGGGCGAAGACCCCGGCTGCTACCTCAGCGATCAGGAAATCGGCCTCGAGCGCATCGCGCTG 
CACGCCGTCTAA