ViewGene
Locus Name:
GeneID:
Location:

GeneID:1498
TrivialName: PA14_68980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68980
PAO1 Ortholog Locus:PA5223
Sequence Length:1185
Protein Length:394
Start: 6153884
Stop: 6152700
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08608.1|AE004935_5 (AE004935) ubiH protein [Pseudomonas aeruginosa PAO1]
Identities = 393/394 (99%), Positives = 394/394 (100%)
Sequence:
ATGAGCAAGGTCAACCTGGCGATCATCGGCGGGGGCCTGGTCGGCGCCTCGCTGGCGCTGGCCCTGCAGGCC
GGCGCTCGGGAGCGCGGCTGGTCGATCGTGCTGATCGAACCCTTCGCCCCCGGCAATGCCTACCAGCCCAGC
TACGACGCCCGCTCTTCGGCGCTGTCCTACGGCAGCCGGCAGATCTACGAGCGTCTCGGCCTGTGGCCGGCG
ATCGCCGAGCGCGCCGAGCCGATCCTGCATATCCATGTTTCCGACCGCGGCCGCTTCGGCGCCACCCGCCTG
ACCGCCATCGAGGAAGGCGTGCCGGCGCTGGGCTACGTGGTGGAGAACGCCTGGCTCGGCCAGTGCCTGTGG
AAGGCGCTCGACCCCGAGGTGGTGCGCTGGCACTGCCCGGCCGAAGTGAAGACCCTGGAAGCCCGGGAGGGC
GGTTACCGGCTTACCCTCGACGACGAGACGCAACTCGATTGCGAGCTGGCGATCCTCGCCGATGGCGGTCGT
TCCGGGCTGCGCGAACAACTCGGCATCGCCGTGGAGCAGACGCCGTACCGGCAGACTGCGCTGATCGCCAAC
GTATCGCCCTCCGAGGCGCACCTCGGGCAGGCCTTCGAGCGCTTCACCCCCAGCGGTCCGATGGCCCTGCTG
CCGTTGCCGGAGAACCGTTGCGCGCTGATCTGGACCCGCCCAGGCAAGGACGCCGAACGTCTGCGTGGCCTC
GATGACGCGGCCTTCCTCGGCGAGCTGCAGGCTGCCTTCGGCTACCGCCTCGGCGCCTTCCGCCAGGTCGGC
GCACGGCACTGCTACCCCTTGCACCTGGTCGAGGCCCGCGAGCAGGTGCGTCCGCACCTGGTGGTGCTGGGC
AACGCTGCGCACAGTCTGCACCCTATCGCCGGCCAGGGCTTCAACCTGTCGTTGCGCGACACCCTGGCGCTG
GTCGACGCCCTGCTCCACGACGACGCGCCGCTGGGCGAGTTCGCCGTGCTGCAGCGCTACCTCGATGGGCAG
CGCCTGGACCAGCAGATGACCGTCGGCTTCTCCGACCGGGTGACCCGGCTGTTCTCCAACGACCGCGCGCTG
CTCGGCGCCGGGCGCAACCTCGGCCTGCTCGGGCTCGACCTGCTGCCGCCGGCCAAGCGCTGGTTCGCCCGT
CAGGCCATGGGCCTCGGCGCGCGGCCGCTGTAG
Translation:
MSKVNLAIIGGGLVGASLALALQAGARERGWSIVLIEPFAPGNAYQPSYDARSSALSYGSRQIYERLGLWPA
IAERAEPILHIHVSDRGRFGATRLTAIEEGVPALGYVVENAWLGQCLWKALDPEVVRWHCPAEVKTLEAREG
GYRLTLDDETQLDCELAILADGGRSGLREQLGIAVEQTPYRQTALIANVSPSEAHLGQAFERFTPSGPMALL
PLPENRCALIWTRPGKDAERLRGLDDAAFLGELQAAFGYRLGAFRQVGARHCYPLHLVEAREQVRPHLVVLG
NAAHSLHPIAGQGFNLSLRDTLALVDALLHDDAPLGEFAVLQRYLDGQRLDQQMTVGFSDRVTRLFSNDRAL
LGAGRNLGLLGLDLLPPAKRWFARQAMGLGARPL*
AnnotationID:1507GeneID:1498
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 13:01:03
Gene Name:ubiH
Confidence Code:2
GeneProduct:2-octaprenyl-6-methoxyphenyl hydroxylase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0654
Secondary Functional Category(ies):energy metabolism
EC Number:1.14.13.-)
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70764.1|AE016720_7 (AE016793) 2-octaprenyl-6-methoxyphenyl hydroxylase [Pseudomonas
           putida KT2440]
          Length = 399

 Score =  610 bits (1572), Expect = e-174
 Identities = 300/393 (76%), Positives = 336/393 (85%)

>gb|AAO58648.1| (AE016875) 2-octaprenyl-6-methoxyphenyl hydroxylase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 395

 Score =  594 bits (1532), Expect = e-169
 Identities = 293/392 (74%), Positives = 327/392 (83%)

>gb|AAM86846.1|AE013930_7 (AE013930) 2-octaprenyl-6-methoxyphynol hydroxylase [Yersinia
           pestis KIM]
          Length = 392

 Score =  300 bits (767), Expect = 1e-80
 Identities = 165/389 (42%), Positives = 236/389 (60%), Gaps = 5/389 (1%)








 
Structural Features:
COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related 
FAD-dependent oxidoreductases 
[Coenzyme metabolism / Energy production and conversion]
CD-Length = 387 residues,  99.2% aligned
Score =  258 bits (661), Expect = 6e-70
Identities = 157/392 (40%), Positives = 201/392 (51%), Gaps = 13/392 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:2999




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20144




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34851




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1498_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1498
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2678
                           PA5223_tr
                           translation of PA5223
                           394
                           99.74
                           99.99
                           0
                           2041.0
     

     
     
84554
                           gb|AAG08608.1|AE004935_5
                           (AE004935) ubiH protein [Pseudomonas aeruginosa PAO1]
                           394
                           99.74
                           99.99
                           0
                           2041.0
     

     
     
84555
                           gb|AAN70764.1|AE016720_7
                           (AE016793) 2-octaprenyl-6-methoxyphenyl hydroxylase [Pseudomonas putida KT2440]
                           399
                           75.18
                           84.21
                           5
                           1568.0
     

     
     
84556
                           gb|AAO58648.1|
                           (AE016875) 2-octaprenyl-6-methoxyphenyl hydroxylase [Pseudomonas syringae pv. tomato str. DC3000]
                           395
                           74.17
                           82.78
                           1
                           1527.0
     

     
     
84558
                           emb|CAC89753.1|
                           (AJ414145) 2-octaprenyl-6-methoxyphenol hydroxylase [Yersinia pestis CO92]
                           398
                           41.70
                           59.54
                           10
                           773.0
     

     






      

          
GC ORFID: 44500How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5223Glimmer Score: 

          
Start: 5417571Stop: 5416387

          
Length: 1185


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5223 translation of PA5223Homolog Bit Score 790.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3230 (ORF: BLASTX 589.0), t_PA5223 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAAGGTCAACCTGGCGATCATCGGCGGGGGCCTGGTCGGCGCCTCGCTGGCGCTGGCCCTGCAGGCC 
GGCGCTCGGGAGCGCGGCTGGTCGATCGTGCTGATCGAACCCTTCGCCCCCGGCAATGCCTACCAGCCCAGC 
TACGACGCCCGCTCTTCGGCGCTGTCCTACGGCAGCCGGCAGATCTACGAGCGTCTCGGCCTGTGGCCGGCG 
ATCGCCGAGCGCGCCGAGCCGATCCTGCATATCCATGTTTCCGACCGCGGCCGCTTCGGCGCCACCCGCCTG 
ACCGCCATCGAGGAAGGCGTGCCGGCGCTGGGCTACGTGGTGGAGAACGCCTGGCTCGGCCAGTGCCTGTGG 
AAGGCGCTCGACCCCGAGGTGGTGCGCTGGCACTGCCCGGCCGAAGTGAAGACCCTGGAAGCCCGGGAGGGC 
GGTTACCGGCTTACCCTCGACGACGAGACGCAACTCGATTGCGAGCTGGCGATCCTCGCCGATGGCGGTCGT 
TCCGGGCTGCGCGAACAACTCGGCATCGCCGTGGAGCAGACGCCGTACCGGCAGACTGCGCTGATCGCCAAC 
GTATCGCCCTCCGAGGCGCACCTCGGGCAGGCCTTCGAGCGCTTCACCCCCAGCGGTCCGATGGCCCTGCTG 
CCGTTGCCGGAGAACCGTTGCGCGCTGATCTGGACCCGCCCAGGCAAGGACGCCGAACGTCTGCGTGGCCTC 
GATGACGCGGCCTTCCTCGGCGAGCTGCAGGCTGCCTTCGGCTACCGCCTCGGCGCCTTCCGCCAGGTCGGC 
GCACGGCACTGCTACCCCTTGCACCTGGTCGAGGCCCGCGAGCAGGTGCGTCCGCACCTGGTGGTGCTGGGC 
AACGCTGCGCACAGTCTGCACCCTATCGCCGGCCAGGGCTTCAACCTGTCGTTGCGCGACACCCTGGCGCTG 
GTCGACGCCCTGCTCCACGACGACGCGCCGCTGGGCGAGTTCGCCGTGCTGCAGCGCTACCTCGATGGGCAG 
CGCCTGGACCAGCAGATGACCGTCGGCTTCTCCGACCGGGTGACCCGGCTGTTCTCCAACGACCGCGCGCTG 
CTCGGCGCCGGGCGCAACCTCGGCCTGCTCGGGCTCGACCTGCTGCCGCCGGCCAAGCGCTGGTTCGCCCGT 
CAGGCCATGGGCCTCGGCGCGCGGCCGCTGTAG