ViewGene
Locus Name:
GeneID:
Location:

GeneID:1492
TrivialName: PA14_26260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26260
PAO1 Ortholog Locus:PA2922
Sequence Length:1170
Protein Length:389
Start: 2291946
Stop: 2290777
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06310.1|AE004718_7 (AE004718) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 389/389 (100%), Positives = 389/389 (100%)
Sequence:
ATGACCGAGCCTGCCGTCCTGCCCGCCATCGCGGCGCTGCGGGAAGAGATGGTTACCTTGCGCCGCCACATC
CATGCCCACCCGGAGCTGGGTTTCGAGGAACGGCGAACCGCCGCGCTGGTCGCCGAATGCCTGGAGGCCTGG
GGCTACCAGGTCAGCCGTGGGGTGGGTCGCACCGGCGTGGTCGGCACCCTGTGCCGCGGCGAGGGCCCCGCG
CTGGGCCTGCGCGCCGACATGGACGCGCTGCCGATCCAGGAAGCCACCGGCCTGCCCTACGCCAGCCAGGTG
GACGGCGTGATGCACGCCTGCGGCCACGACGGCCACACCGCGATGCTCCTCGCCGCGGCCAGGCACCTGGTC
GAGTCGCCGCACTGGCGCGGCACCCTGCAACTGATCTTCCAGCCTGCCGAAGAGGGCCTCGGCGGTGCCCGC
GCGATGCTCGACGACGGGCTGCTGGAGCGCTTCCCCTGCGACGCCATCTTCGCCATGCACAACGTCCCGGGA
TACCCCGTCGGCCACCTCGGCTTCCATCCCGGCCCCTTCATGGCCTCGGCCGACACCGTGGTCATCCGCGTG
ATCGGCAGCGGCGGCCACGGCGCGGTGCCGCAGCGCACCGTCGACCCGGTGGTGGTCTGCTCCGCCATCGTG
CTGGCCTTGCAGAGCATCGTCTCGCGCAACGTCGACCCGCAGGACACCGCGATCGTCAGCGTCGGCGCAATC
CATGCCGGGACGGTCTCCAACGTGATCCCGGCCAGCGCCGAAATGATCCTCAGCGTCCGCGCCCTGACCGCG
GAAACCCGTGCCCTGCTGGAGCGCCGCATCGGCGAACTGGCCCGCGGCCAGGCCGCCAGCTTCGGCGCGCGG
GCGGAGGTCGACTACCGGCATTGCCATCCGGTGCTGGTCAACCATCCCGGGCAGACCGCGTTCGCCCGCGAG
GTGGCCCGCGACTGGCTGGGCGAGGAATGCCTGATCGACGGACTGCGGCCGTTCACCGCCAGCGAGGATTTC
GCCTTCATCCTCGAACGCTGTCCCGGCAGCTACCTGGTGATCGGCAACGGCCAGGGCGAGAGCGGCTGCCAG
TTGCACAACCCCGGCTACGACTTCAACGACGACTGCCTGGCCGTCGGCGCCAGCTACTGGGTGCGACTGGCC
GAGCGCTTCCTGGCCTGA
Translation:
MTEPAVLPAIAALREEMVTLRRHIHAHPELGFEERRTAALVAECLEAWGYQVSRGVGRTGVVGTLCRGEGPA
LGLRADMDALPIQEATGLPYASQVDGVMHACGHDGHTAMLLAAARHLVESPHWRGTLQLIFQPAEEGLGGAR
AMLDDGLLERFPCDAIFAMHNVPGYPVGHLGFHPGPFMASADTVVIRVIGSGGHGAVPQRTVDPVVVCSAIV
LALQSIVSRNVDPQDTAIVSVGAIHAGTVSNVIPASAEMILSVRALTAETRALLERRIGELARGQAASFGAR
AEVDYRHCHPVLVNHPGQTAFAREVARDWLGEECLIDGLRPFTASEDFAFILERCPGSYLVIGNGQGESGCQ
LHNPGYDFNDDCLAVGASYWVRLAERFLA*
AnnotationID:1501GeneID:1492
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 08:08:14
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA2922
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative amino acid amidohydrolase
Functional Category Confidence Code:5
COGs:COG1473,pfam01546
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC45132.1| (AL591784) PUTATIVE HIPPURATE HYDROLASE PROTEIN [Sinorhizobium
           meliloti]
          Length = 389

 Score =  414 bits (1064), Expect = e-115
 Identities = 203/382 (53%), Positives = 264/382 (69%), Gaps = 1/382 (0%)

>gb|AAL44232.1| (AE009272) hippurate hydrolase [Agrobacterium tumefaciens str. C58
           (U. Washington)]
          Length = 395

 Score =  412 bits (1058), Expect = e-114
 Identities = 208/381 (54%), Positives = 264/381 (69%), Gaps = 4/381 (1%)

>gb|AAN83352.1|AE016770_152 (AE016770) Putative hippuricase [Escherichia coli CFT073]
          Length = 388

 Score =  398 bits (1023), Expect = e-110
 Identities = 208/382 (54%), Positives = 263/382 (68%), Gaps = 3/382 (0%)








 
Structural Features:
COG1473, AbgB, Metal-dependent 
amidase/aminoacylase/carboxypeptidase
CD-Length = 392 residues,  97.7% aligned
Score =  439 bits (1130), Expect = 3e-124
Identities = 194/384 (50%), Positives = 253/384 (65%), Gaps = 6/384 (1%)

pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.
CD-Length = 378 residues,  99.5% aligned
Score =  233 bits (595), Expect = 3e-62
Identities = 124/391 (31%), Positives = 172/391 (43%), Gaps = 35/391 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2987




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20132




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36127




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1492_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1492
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2670
                           PA2922_tr
                           translation of PA2922
                           389
                           99.99
                           99.99
                           0
                           2039.0
     

     
     
84222
                           gb|AAG06310.1|AE004718_7
                           (AE004718) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           389
                           99.99
                           99.99
                           0
                           2039.0
     

     
     
84224
                           gb|AAQ59774.1|
                           (AE016917) probable hydrolase [Chromobacterium violaceum ATCC 12472]
                           396
                           54.29
                           69.19
                           11
                           1088.0
     

     
     
2671
                           PA4344_tr
                           translation of PA4344
                           409
                           54.27
                           68.94
                           23
                           1118.0
     

     
     
84223
                           gb|AAG07732.1|AE004850_10
                           (AE004850) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           409
                           54.27
                           68.94
                           23
                           1118.0
     

     






      

          
GC ORFID: 44494How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2922Glimmer Score: 

          
Start: 2661979Stop: 2663148

          
Length: 1170


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2922 translation of PA2922Homolog Bit Score 790.0

          
Other Homologs:  t_PA4344 (ORF: BLASTX 434.0), psyr_15may02_Scaffold2_revised_gene3644 (ORF: BLASTX 353.0), t_PA2922 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGAGCCTGCCGTCCTGCCCGCCATCGCGGCGCTGCGGGAAGAGATGGTTACCTTGCGCCGCCACATC 
CATGCCCACCCGGAGCTGGGTTTCGAGGAACGGCGAACCGCCGCGCTGGTCGCCGAATGCCTGGAGGCCTGG 
GGCTACCAGGTCAGCCGTGGGGTGGGTCGCACCGGCGTGGTCGGCACCCTGTGCCGCGGCGAGGGCCCCGCG 
CTGGGCCTGCGCGCCGACATGGACGCGCTGCCGATCCAGGAAGCCACCGGCCTGCCCTACGCCAGCCAGGTG 
GACGGCGTGATGCACGCCTGCGGCCACGACGGCCACACCGCGATGCTCCTCGCCGCGGCCAGGCACCTGGTC 
GAGTCGCCGCACTGGCGCGGCACCCTGCAACTGATCTTCCAGCCTGCCGAAGAGGGCCTCGGCGGTGCCCGC 
GCGATGCTCGACGACGGGCTGCTGGAGCGCTTCCCCTGCGACGCCATCTTCGCCATGCACAACGTCCCGGGA 
TACCCCGTCGGCCACCTCGGCTTCCATCCCGGCCCCTTCATGGCCTCGGCCGACACCGTGGTCATCCGCGTG 
ATCGGCAGCGGCGGCCACGGCGCGGTGCCGCAGCGCACCGTCGACCCGGTGGTGGTCTGCTCCGCCATCGTG 
CTGGCCTTGCAGAGCATCGTCTCGCGCAACGTCGACCCGCAGGACACCGCGATCGTCAGCGTCGGCGCAATC 
CATGCCGGGACGGTCTCCAACGTGATCCCGGCCAGCGCCGAAATGATCCTCAGCGTCCGCGCCCTGACCGCG 
GAAACCCGTGCCCTGCTGGAGCGCCGCATCGGCGAACTGGCCCGCGGCCAGGCCGCCAGCTTCGGCGCGCGG 
GCGGAGGTCGACTACCGGCATTGCCATCCGGTGCTGGTCAACCATCCCGGGCAGACCGCGTTCGCCCGCGAG 
GTGGCCCGCGACTGGCTGGGCGAGGAATGCCTGATCGACGGACTGCGGCCGTTCACCGCCAGCGAGGATTTC 
GCCTTCATCCTCGAACGCTGTCCCGGCAGCTACCTGGTGATCGGCAACGGCCAGGGCGAGAGCGGCTGCCAG 
TTGCACAACCCCGGCTACGACTTCAACGACGACTGCCTGGCCGTCGGCGCCAGCTACTGGGTGCGACTGGCC 
GAGCGCTTCCTGGCCTGA