ViewGene
Locus Name:
GeneID:
Location:

GeneID:1491
TrivialName: PA14_34200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34200
PAO1 Ortholog Locus:PA2355
Sequence Length:1185
Protein Length:394
Start: 3041071
Stop: 3042255
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05743.1|AE004661_10 (AE004661) probable FMNH2-dependent monooxygenase [Pseudomonas aeruginosa PAO1]
Identities = 393/394 (99%), Positives = 394/394 (100%)
Sequence:
GTGAATGCGAAGACCCGCCCCGAGGCGCAAACGCCGTTGCAGATTGCCCGGCGCCTGGCCGCCGATTTCGCC
GAGAACGCCGCCGAGCGCGACGTCGCCGGCGGCACCCCGAAGGCCGAGCGCGACGCGTTGCGCCGCAGCGGC
CTGTTGTCGCTGATCATCCCGCGCGAATACGGCGGCCTGGGGGCGAGCTGGAGCGAAACCCTGCAAACCGTG
CGCGAACTGGCCCGGGTCGATAGCTCGATCGCCCACGTCTACGGCTTCCAGCACCTGATGCTGGCCACCGTG
CGCCTGTTCTCGCGGCCCGAGCAATGGCAGCCGTGGTTCGAGCTGACCGCGCGCAACCGCTGGTTCTGGGGC
AACGCGCTGAACCCGCTGGACAACCGTACCGTGGCCCGGCGCTTCGACGGCTGGCGCGAGTTCTCCGGGAAG
AAGAGCTTCTGCTCCGGCGCCCGCGATTCGGAGATGCTCATCGCCTCGGCGCTGGACGGCGAGGGCGGGGCG
CTGCTGATCGCCGCCATCCCCACCGCGCGCAGCGGTATCAGCCTGGGCCAGGATTGGGACAACATGGGCCAG
CGGCAGACCGACAGCGGCAGCGCGATCTTCGAGCGGGTGCGGGTGGAGGAGAGCGAGTTGCTGCTCGATCCC
GGGCCGCTGAGCACGCCGTTCGCCTGCCTGCGGCCGCTGATCGCCCAGTTGATCTTCACCGAGGTGTTCCTC
GGCATCGCCGAAGGCGCCTTCGAGGAGGCTCGCCAGTACACCCTGCGCGAAGCGCGACCGTGGTTCCGCTCC
GAGGTCGCCGAGGCCAATGCCGACCCCTATGTGCTGGCGCGCTACGGCGAATTCTGGGTCGGCCTGGAAAGC
ACCCGGGCGCTGGTCGAGCGCGCCGCGCAGCGCCTCGACGCCGCCTGGTCCGAGGGCCCGGCGCTGGACGCC
AGCGAGCGCGGCCAGTTGGCCCTGGCCATCGCCGCCGCCAAGGTCGCCGCGACGCGCAACGGCCTCGACCTG
TGCAACCGCATGTTCGAAGTCACCGGCGCCCGCTCCACTCACGCCGCCCTGCGCCTGGACCGCTACTGGCGC
AACCTGCGCACCCAGACCCTGCACGACCCGCTGGACTACAAGATCCGCGAGCTGGGCGACTGGGCGCTGAAC
CAGTCACCGCCGCAACCGACCTTCTACTCATGA
Translation:
MNAKTRPEAQTPLQIARRLAADFAENAAERDVAGGTPKAERDALRRSGLLSLIIPREYGGLGASWSETLQTV
RELARVDSSIAHVYGFQHLMLATVRLFSRPEQWQPWFELTARNRWFWGNALNPLDNRTVARRFDGWREFSGK
KSFCSGARDSEMLIASALDGEGGALLIAAIPTARSGISLGQDWDNMGQRQTDSGSAIFERVRVEESELLLDP
GPLSTPFACLRPLIAQLIFTEVFLGIAEGAFEEARQYTLREARPWFRSEVAEANADPYVLARYGEFWVGLES
TRALVERAAQRLDAAWSEGPALDASERGQLALAIAAAKVAATRNGLDLCNRMFEVTGARSTHAALRLDRYWR
NLRTQTLHDPLDYKIRELGDWALNQSPPQPTFYS*
AnnotationID:1500GeneID:1491
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 07:07:10
Gene Name:
Confidence Code:3
GeneProduct:putative FMNH2-dependent monooxygenase
Cell Localization:()
Synonyms:msuC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative DBT monooxygenase DszC
Functional Category Confidence Code:5
COGs:cd01163
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68380.1|AE016470_9 (AE016784) monooxygenase, putative [Pseudomonas putida KT2440]
          Length = 395

 Score =  607 bits (1564), Expect = e-173
 Identities = 297/395 (75%), Positives = 330/395 (83%), Gaps = 1/395 (0%)

>gb|AAM35734.1| (AE011716) FMNH2-dependent monooxygenase [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 395

 Score =  599 bits (1544), Expect = e-170
 Identities = 292/389 (75%), Positives = 327/389 (84%)








 
Structural Features:
cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C (DszC).
CD-Length = 377 residues, 100.0% aligned
Score =  379 bits (976), Expect = 2e-106






   
Genomic Context:






   
Comment:
other possible gene name: dszC


















    ReferenceID:14371




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20130




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32903




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1491_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1491
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2669
                           PA2355_tr
                           translation of PA2355
                           394
                           99.74
                           99.99
                           0
                           2039.0
     

     
     
84206
                           gb|AAG05743.1|AE004661_10
                           (AE004661) probable FMNH2-dependent monooxygenase [Pseudomonas aeruginosa PAO1]
                           394
                           99.49
                           99.99
                           0
                           2036.0
     

     
     
84207
                           gb|AAB82565.1|
                           (AF026067) putative FMNH2-dependent monooxygenase [Pseudomonas aeruginosa]
                           412
                           91.26
                           91.99
                           25
                           1919.0
     

     
     
84208
                           gb|AAN68380.1|AE016470_9
                           (AE016784) monooxygenase, putative [Pseudomonas putida KT2440]
                           395
                           74.93
                           83.54
                           1
                           1562.0
     

     
     
84209
                           gb|AAM35734.1|
                           (AE011716) FMNH2-dependent monooxygenase [Xanthomonas axonopodis pv. citri str. 306]
                           395
                           73.92
                           83.29
                           1
                           1544.0
     

     






      

          
GC ORFID: 44493How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2355Glimmer Score: 

          
Start: 1912845Stop: 1911661

          
Length: 1185


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2355 translation of PA2355Homolog Bit Score 790.0

          
Other Homologs:  t_PA2355 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAATGCGAAGACCCGCCCCGAGGCGCAAACGCCGTTGCAGATTGCCCGGCGCCTGGCCGCCGATTTCGCC 
GAGAACGCCGCCGAGCGCGACGTCGCCGGCGGCACCCCGAAGGCCGAGCGCGACGCGTTGCGCCGCAGCGGC 
CTGTTGTCGCTGATCATCCCGCGCGAATACGGCGGCCTGGGGGCGAGCTGGAGCGAAACCCTGCAAACCGTG 
CGCGAACTGGCCCGGGTCGATAGCTCGATCGCCCACGTCTACGGCTTCCAGCACCTGATGCTGGCCACCGTG 
CGCCTGTTCTCGCGGCCCGAGCAATGGCAGCCGTGGTTCGAGCTGACCGCGCGCAACCGCTGGTTCTGGGGC 
AACGCGCTGAACCCGCTGGACAACCGTACCGTGGCCCGGCGCTTCGACGGCTGGCGCGAGTTCTCCGGGAAG 
AAGAGCTTCTGCTCCGGCGCCCGCGATTCGGAGATGCTCATCGCCTCGGCGCTGGACGGCGAGGGCGGGGCG 
CTGCTGATCGCCGCCATCCCCACCGCGCGCAGCGGTATCAGCCTGGGCCAGGATTGGGACAACATGGGCCAG 
CGGCAGACCGACAGCGGCAGCGCGATCTTCGAGCGGGTGCGGGTGGAGGAGAGCGAGTTGCTGCTCGATCCC 
GGGCCGCTGAGCACGCCGTTCGCCTGCCTGCGGCCGCTGATCGCCCAGTTGATCTTCACCGAGGTGTTCCTC 
GGCATCGCCGAAGGCGCCTTCGAGGAGGCTCGCCAGTACACCCTGCGCGAAGCGCGACCGTGGTTCCGCTCC 
GAGGTCGCCGAGGCCAATGCCGACCCCTATGTGCTGGCGCGCTACGGCGAATTCTGGGTCGGCCTGGAAAGC 
ACCCGGGCGCTGGTCGAGCGCGCCGCGCAGCGCCTCGACGCCGCCTGGTCCGAGGGCCCGGCGCTGGACGCC 
AGCGAGCGCGGCCAGTTGGCCCTGGCCATCGCCGCCGCCAAGGTCGCCGCGACGCGCAACGGCCTCGACCTG 
TGCAACCGCATGTTCGAAGTCACCGGCGCCCGCTCCACTCACGCCGCCCTGCGCCTGGACCGCTACTGGCGC 
AACCTGCGCACCCAGACCCTGCACGACCCGCTGGACTACAAGATCCGCGAGCTGGGCGACTGGGCGCTGAAC 
CAGTCACCGCCGCAACCGACCTTCTACTCATGA