ViewGene
Locus Name:
GeneID:
Location:

GeneID:1490
TrivialName: PA14_48520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48520
PAO1 Ortholog Locus:PA1222
Sequence Length:1158
Protein Length:385
Start: 4312387
Stop: 4313544
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04611.1|AE004552_1 (AE004552) probable membrane-bound lytic murein transglycolase A [Pseudomonas aeruginosa PAO1]
Identities = 383/385 (99%), Positives = 384/385 (99%)
Sequence:
GTGAAGTTTCCGTTCCATCCCTGGCGCCGCCTGCTGCTCTGCGCGCTCCCTTTCGCCGCCCTGCTGACCGCA
TGCGACGACGGCAAGAAAGAGCCCCCGCCCAAACCCGCCGAAGTCACCACCTACAACAGCGTGCCCTGGGAC
GCCCTGCCGGCCACCAGCGACGCCGACCTGCTCGCCGGCTTCAATGCCTGGCGCTCGGCCTGCGCGCGGCTG
GCCAAGGACCCGGTATGGGGCGAGCCCTGTGCGAGCGCCACGACGGTCGCCGCCGATCCGACGGCTGTGCGC
GCGTTCCTCCAGGAGCGGATGCAGGTCTATAGCCTGCGTTCCTCCAGCAACGGCGACCAGGGCCTGATCACC
GGCTACTACGAACCGGTCTACCACGGCAGCCTGAGCCAGGGCGAAAAAAACCCGGTGCCGATCTACGGCGTA
CCGGACGACCTGGTGGTGGTCGCGCTGGAAAGCGTCTACCCGGAACTCAAGGGCAAGCGCCTGCGCGGACGC
CTGGAAGGCCGGGTGCTGAAACCCTACGACGACGCCGCGACGATCCGCGACAACGGCTCCAGCGCGCCGGTG
CTCGCCTGGCTGGGCGACCCGATGGACCTGCAGTTCCTGCAGATCCAGGGTTCCGGGCGCATCCAGCTGGAA
GACGGCCGGCAACTGCGCATCGGCTACGGCGACCAGAATGGCCACCCGTACAAGCCGGTCGGCCGCTGGCTG
GTCGAGCAGGGCCTGGTGCCGAAGGAAGAGATCAGCATGAAGCGCATCCGCGACTGGGCCGAGGCCAATCCG
CAGCGGGTCTCCGAACTGCTGGCGAGCAATCCCAGCTTCGTGTTCTTCAGCCTGCGTCCGGACAGCGACGAA
GGTCCGCGCGGCTCGCTGAACGTACCGCTGACCGACGGCTACAGCGTAGCCATCGACCGCAAGGTGATTCCG
CTGGGCAGCCTGATGTGGCTGTCCACCACTCGCCCTGACGACGGCAGCGCGGTGGTCCGTCCGGTGGCGGCC
CAGGATACCGGCGGGGCCATCGTCGGCGAGGTCCGCGCCGATCTGTTCTGGGGCACCGGCGACGCCGCCGGC
GAACTCGCCGGACACATGAAGCAGCCGGGCCGGCTCTGGCTGCTATGGCCCAAGGGTGCGCCGCTGCCCGCC
TCCTGA
Translation:
MKFPFHPWRRLLLCALPFAALLTACDDGKKEPPPKPAEVTTYNSVPWDALPATSDADLLAGFNAWRSACARL
AKDPVWGEPCASATTVAADPTAVRAFLQERMQVYSLRSSSNGDQGLITGYYEPVYHGSLSQGEKNPVPIYGV
PDDLVVVALESVYPELKGKRLRGRLEGRVLKPYDDAATIRDNGSSAPVLAWLGDPMDLQFLQIQGSGRIQLE
DGRQLRIGYGDQNGHPYKPVGRWLVEQGLVPKEEISMKRIRDWAEANPQRVSELLASNPSFVFFSLRPDSDE
GPRGSLNVPLTDGYSVAIDRKVIPLGSLMWLSTTRPDDGSAVVRPVAAQDTGGAIVGEVRADLFWGTGDAAG
ELAGHMKQPGRLWLLWPKGAPLPAS*
AnnotationID:1499GeneID:1490
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 06:06:02
Gene Name:
Confidence Code:3
GeneProduct:putative membrane-bound lytic murein transglycolase A
Cell Localization:()
Synonyms:mltA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2821,pfam03562
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54556.1| (AE016859) transglycosylase, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 399

 Score =  548 bits (1412), Expect = e-155
 Identities = 269/385 (69%), Positives = 304/385 (78%), Gaps = 3/385 (0%)

>gb|AAN70538.1|AE016696_3 (AE016792) outer membrane-bound lytic murein transglycolase A,
           putative [Pseudomonas putida KT2440]
          Length = 392

 Score =  536 bits (1381), Expect = e-152
 Identities = 262/374 (70%), Positives = 293/374 (78%), Gaps = 2/374 (0%)








 
Structural Features:
COG2821, MltA, Membrane-bound lytic murein transglycosylase 
[Cell envelope biogenesis, outer membrane]
CD-Length = 373 residues, 100.0% aligned
Score =  385 bits (989), Expect = 7e-108
Identities = 158/387 (40%), Positives = 196/387 (50%), Gaps = 20/387 (5%)

pfam03562, MltA, MltA N-terminal domain. 
CD-Length = 191 residues, 100.0% aligned
Score =  243 bits (622), Expect = 2e-65
Identities = 103/208 (49%), Positives = 123/208 (59%), Gaps = 19/208 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14369




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20128




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37565




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1490_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1490
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2668
                           PA1222_tr
                           translation of PA1222
                           385
                           99.48
                           99.74
                           0
                           2040.0
     

     
     
84201
                           gb|AAG04611.1|AE004552_1
                           (AE004552) probable membrane-bound lytic murein transglycolase A [Pseudomonas aeruginosa PAO1]
                           385
                           99.22
                           99.74
                           0
                           2037.0
     

     
     
84202
                           gb|AAO54556.1|
                           (AE016859) transglycosylase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           400
                           67.00
                           76.25
                           16
                           1412.0
     

     
     
84203
                           gb|AAN70538.1|AE016696_3
                           (AE016792) outer membrane-bound lytic murein transglycolase A, putative [Pseudomonas putida KT2440]
                           398
                           66.08
                           74.12
                           19
                           1373.0
     

     
     
84204
                           gb|AAQ61421.1|
                           (AE016923) peptidoglycan N-acetylmuramoylhydrolase [Chromobacterium violaceum ATCC 12472]
                           443
                           40.63
                           52.82
                           82
                           784.0
     

     






      

          
GC ORFID: 44492How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1222Glimmer Score: 

          
Start: 641521Stop: 640364

          
Length: 1158


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1222 translation of PA1222Homolog Bit Score 790.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4252 (ORF: BLASTX 550.0), t_PA1222 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGTTTCCGTTCCATCCCTGGCGCCGCCTGCTGCTCTGCGCGCTCCCTTTCGCCGCCCTGCTGACCGCA 
TGCGACGACGGCAAGAAAGAGCCCCCGCCCAAACCCGCCGAAGTCACCACCTACAACAGCGTGCCCTGGGAC 
GCCCTGCCGGCCACCAGCGACGCCGACCTGCTCGCCGGCTTCAATGCCTGGCGCTCGGCCTGCGCGCGGCTG 
GCCAAGGACCCGGTATGGGGCGAGCCCTGTGCGAGCGCCACGACGGTCGCCGCCGATCCGACGGCTGTGCGC 
GCGTTCCTCCAGGAGCGGATGCAGGTCTATAGCCTGCGTTCCTCCAGCAACGGCGACCAGGGCCTGATCACC 
GGCTACTACGAACCGGTCTACCACGGCAGCCTGAGCCAGGGCGAAAAAAACCCGGTGCCGATCTACGGCGTA 
CCGGACGACCTGGTGGTGGTCGCGCTGGAAAGCGTCTACCCGGAACTCAAGGGCAAGCGCCTGCGCGGACGC 
CTGGAAGGCCGGGTGCTGAAACCCTACGACGACGCCGCGACGATCCGCGACAACGGCTCCAGCGCGCCGGTG 
CTCGCCTGGCTGGGCGACCCGATGGACCTGCAGTTCCTGCAGATCCAGGGTTCCGGGCGCATCCAGCTGGAA 
GACGGCCGGCAACTGCGCATCGGCTACGGCGACCAGAATGGCCACCCGTACAAGCCGGTCGGCCGCTGGCTG 
GTCGAGCAGGGCCTGGTGCCGAAGGAAGAGATCAGCATGAAGCGCATCCGCGACTGGGCCGAGGCCAATCCG 
CAGCGGGTCTCCGAACTGCTGGCGAGCAATCCCAGCTTCGTGTTCTTCAGCCTGCGTCCGGACAGCGACGAA 
GGTCCGCGCGGCTCGCTGAACGTACCGCTGACCGACGGCTACAGCGTAGCCATCGACCGCAAGGTGATTCCG 
CTGGGCAGCCTGATGTGGCTGTCCACCACTCGCCCTGACGACGGCAGCGCGGTGGTCCGTCCGGTGGCGGCC 
CAGGATACCGGCGGGGCCATCGTCGGCGAGGTCCGCGCCGATCTGTTCTGGGGCACCGGCGACGCCGCCGGC 
GAACTCGCCGGACACATGAAGCAGCCGGGCCGGCTCTGGCTGCTATGGCCCAAGGGTGCGCCGCTGCCCGCC 
TCCTGA