ViewGene
Locus Name:
GeneID:
Location:

GeneID:149
TrivialName: PA14_33680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33680
PAO1 Ortholog Locus:PA2398
Sequence Length:2448
Protein Length:815
Start: 2988606
Stop: 2986159
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05786.1|AE004666_2 (AE004666) ferripyoverdine receptor [Pseudomonas aeruginosa PAO1]
Identities = 813/815 (99%), Positives = 815/815 (100%)
Sequence:
ATGCCAGCACCACACGGTCTCAGTCCTCTGAGTAAGGCGTTTTTGATGCGCCGTGCCTTCCAACGCAGGATG
CTTCCCCACTCGCTCGCCATGGCCCTGAGCCTGCCGCTGGCGGGATATGTCCAGGCGCAGGAAATCGAGTTC
GACATCCCTCCCCAGGCGCTGGGCAGCGCACTCCAGGAGTTCGGCCGCCAGGCGGATATCCAGGTGCTGTAT
CGCCCGGAAGAGGTCCGGAACAAGCGTAGCAGTGCGATCAAGGGCAAGCTTGAGCCGAACCAGGCGATTACC
GAGCTGCTTCGTGGCACCGGCGCATCGGTGGACTTCCAGGGCAATGCGATAACCATCAGCGTCGCCGAGGCG
GCGGACAGCAGCGTCGATCTCGGCGCCACCATGATCACCTCCAACCAGTTGGGCACCATCACCGAGGACAGC
GGCTCCTATACGCCAGGCACTATCGCCACGGCGACCCGCCTGGTCCTGACTCCGCGCGAGACACCCCAGTCG
ATCACCGTGGTCACCCGCCAGAACATGGACGACTTCGGCCTCAACAATATCGACGACGTCATGCGCCATACG
CCGGGCATCACCGTCTCGGCCTACGACACTGACCGCAACAACTACTATGCCCGCGGCTTCTCGATCAACAAC
TTCCAGTACGACGGGATTCCCTCGACGGCCCGCAACGTCGGCTACTCCGCGGGCAATACGCTCAGTGACATG
GCCATCTACGACCGGGTGGAAGTACTCAAGGGGGCGACCGGCCTGCTCACCGGTGCGGGGTCCCTCGGCGCC
ACGATCAACCTGATCCGCAAGAAACCTACCCATGAATTCAAGGGCCATGTCGAACTGGGCGCGGGCAGTTGG
GACAATTACCGCTCCGAACTGGACGTCAGCGGCCCGCTGACCGAGTCCGGCAACGTCCGCGGCCGGGCGGTA
GCCGCCTACCAGGACAAGCACTCGTTCATGGATCACTACGAGCGCAAAACCAGCGTCTATTACGGCATCCTC
GAGTTCGATCTGAATCCCGACACCATGCTTACCGTCGGCGCCGACTATCAGGACAACGATCCCAAGGGATCG
GGCTGGTCGGGCAGCTTCCCGCTCTTCGACAGCCAGGGCAACCGCAACGACGTCTCCCGCTCCTTCAACAAC
GGAGCCAAGTGGAGCAGTTGGGAGCAGTACACCCGCACCGTCTTCGCCAACCTCGAGCACAATTTCGCCAAC
GGCTGGGTCGGCAAGGTGCAGCTCGATCACAAGATCAACGGCTACCACGCGCCCCTCGGCGCGATCATGGGC
GACTGGCCGGCACCGGACAACAGCGCCAAGATCGTTGCGCAGAAGTACACCGGCGAAACCAAGAGCAACTCG
CTGGATATCTATCTCACCGGCCCCTTCCAGTTCCTCGGTCGCGAGCACGAGCTGGTGGTCGGCACCTCGGCT
TCCTTCTCCCACTGGGAGGGCAAGAGCTACTGGAACCTGCGCAACTACGACAACACCACCGACGACTTCATC
AACTGGGACGGCGATATAGGCAAGCCCGATTGGGGTACCCCCTCCCAGTACATCGATGACAAGACCCGCCAG
TTGGGCAGCTACATGACCGCCCGCTTCAATGTGACCGATGACCTGAACCTGTTCCTAGGTGGACGCGTGGTC
GACTACCGGGTAACCGGCCTGAATCCGACCATTCGCGAGTCCGGACGCTTCATTCCCTACGTCGGCGCGGTC
TACGACCTGAACGATACCTACTCCGTCTACGCCAGCTATACCGACATCTTCATGCCGCAGGACAGTTGGTAT
CGCGACAGCAGCAACAAACTGCTCGAACCCGACGAAGGCCAGAACTACGAGATCGGCATCAAGGGCGAATAT
CTCGACGGACGACTCAATACCAGTCTCGCCTACTTCGAGATTCATGAGGAAAACCGCGCGGAGGAAGACGCC
CTCTACAACAGCAAACCGACCAACCCCGCCATCACCTACGCCTACAAGGGCATCAAGGCCAAGACCAAGGGC
TACGAGGCGGAAATCTCGGGTGAACTGGCGCCAGGCTGGCAGGTTCAGGCTGGCTATACCCACAAGATCATT
CGCGACGACAGTGGCAAGAAGGTTTCCACCTGGGAGCCTCAGGACCAGTTGAGCCTCTACACCAGCTACAAG
TTCAAGGGCGCCCTGGACAAGCTCACGGTCGGCGGCGGCGCCCGCTGGCAGGGCAAGAGCTGGCAGATGGTC
TACAACAATCCCCGCAGCCGCTGGGAAAAGTTCTCCCAGGAAGACTACTGGCTGGTGGACCTGATGGCCCGC
TACCAGATCACCGACAAGCTGTCGGCCAGCGTCAACGTCAACAACGTCTTCGACAAGACCTACTACACCAAC
ATCGGTTTCTACACCTCGGCATCCTATGGCGATCCACGGAACCTGATGTTCAGCACTCGCTGGGACTTCTGA
Translation:
MPAPHGLSPLSKAFLMRRAFQRRMLPHSLAMALSLPLAGYVQAQEIEFDIPPQALGSALQEFGRQADIQVLY
RPEEVRNKRSSAIKGKLEPNQAITELLRGTGASVDFQGNAITISVAEAADSSVDLGATMITSNQLGTITEDS
GSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGFSINN
FQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSW
DNYRSELDVSGPLTESGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGS
GWSGSFPLFDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKINGYHAPLGAIMG
DWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFI
NWDGDIGKPDWGTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAV
YDLNDTYSVYASYTDIFMPQDSWYRDSSNKLLEPDEGQNYEIGIKGEYLDGRLNTSLAYFEIHEENRAEEDA
LYNSKPTNPAITYAYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSLYTSYK
FKGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNVNNVFDKTYYTN
IGFYTSASYGDPRNLMFSTRWDF*
AnnotationID:159GeneID:149
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:12
Gene Name:fpvA
Confidence Code:1
GeneProduct:ferripyoverdine receptor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4773
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4773, FhuE, Outer membrane receptor for ferric coprogen 
and ferric-rhodotorulic acid 
[Inorganic ion transport and metabolism]
CD-Length = 719 residues,  99.4% aligned
Score =  872 bits (2254), Expect = 0.0
Identities = 356/743 (47%), Positives = 454/743 (61%), Gaps = 31/743 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:301




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17443




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32948




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:149_cdd.html


    		




 
URL:

















    ReferenceID:34487




  
Author/Investigator(s):
        Poole K, Neshat S, Krebes K, Heinrichs DE.





  
Title:
        Cloning and nucleotide sequence analysis of the ferripyoverdine receptor gene fpvA of Pseudomonas aeruginosa.




  
PubMed:
        8335619


MedLine:
        




    
Source:
J Bacteriol. 1993 Aug;175(15):4597-604.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8335619

















    ReferenceID:34488




  
Author/Investigator(s):
        Thupvong T, Wiideman A, Dunn D, Oreschak K, Jankowicz B, Doering J, Castignetti D.





  
Title:
        Sequence heterogeneity of the ferripyoverdine uptake (fpvA), but not the ferric uptake regulator (fur), genes among strains of the fluorescent pseudomonads Pseudomonas aeruginosa, Pseudomonas aureofaciens, Pseudomonas fluorescens and Pseudomonas putida.




  
PubMed:
        10581691


MedLine:
        




    
Source:
Biometals. 1999 Sep;12(3):265-74.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10581691









           
Homologs By Global Alignment 

           

       



     
Gene ID:149
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
270
                           PA2398_tr
                           translation of PA2398
                           815
                           99.75
                           99.99
                           0
                           4329.0
     

     
     
18103
                           gb|AAG05786.1|AE004666_2
                           (AE004666) ferripyoverdine receptor [Pseudomonas aeruginosa PAO1]
                           815
                           99.75
                           99.99
                           0
                           4329.0
     

     
     
18104
                           gb|AAB60199.1|
                           (U07359) ferripyoverdine receptor [Pseudomonas aeruginosa]
                           815
                           99.75
                           99.99
                           0
                           4329.0
     

     
     
18105
                           gb|AAA25819.1|
                           (L10210) ferripyoverdine receptor [Pseudomonas aeruginosa]
                           815
                           99.26
                           99.63
                           2
                           4296.0
     

     
     
18106
                           emb|CAA39942.1|
                           (X56605) pseudobactin uptake protein [Pseudomonas putida]
                           855
                           40.00
                           57.30
                           76
                           1542.0
     

     






      

          
GC ORFID: 43151How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2398Glimmer Score: 

          
Start: 1965310Stop: 1967757

          
Length: 2448


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2398 translation of PA2398Homolog Bit Score 1672.0

          
Other Homologs:  t_PA2398 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCAGCACCACACGGTCTCAGTCCTCTGAGTAAGGCGTTTTTGATGCGCCGTGCCTTCCAACGCAGGATG 
CTTCCCCACTCGCTCGCCATGGCCCTGAGCCTGCCGCTGGCGGGATATGTCCAGGCGCAGGAAATCGAGTTC 
GACATCCCTCCCCAGGCGCTGGGCAGCGCACTCCAGGAGTTCGGCCGCCAGGCGGATATCCAGGTGCTGTAT 
CGCCCGGAAGAGGTCCGGAACAAGCGTAGCAGTGCGATCAAGGGCAAGCTTGAGCCGAACCAGGCGATTACC 
GAGCTGCTTCGTGGCACCGGCGCATCGGTGGACTTCCAGGGCAATGCGATAACCATCAGCGTCGCCGAGGCG 
GCGGACAGCAGCGTCGATCTCGGCGCCACCATGATCACCTCCAACCAGTTGGGCACCATCACCGAGGACAGC 
GGCTCCTATACGCCAGGCACTATCGCCACGGCGACCCGCCTGGTCCTGACTCCGCGCGAGACACCCCAGTCG 
ATCACCGTGGTCACCCGCCAGAACATGGACGACTTCGGCCTCAACAATATCGACGACGTCATGCGCCATACG 
CCGGGCATCACCGTCTCGGCCTACGACACTGACCGCAACAACTACTATGCCCGCGGCTTCTCGATCAACAAC 
TTCCAGTACGACGGGATTCCCTCGACGGCCCGCAACGTCGGCTACTCCGCGGGCAATACGCTCAGTGACATG 
GCCATCTACGACCGGGTGGAAGTACTCAAGGGGGCGACCGGCCTGCTCACCGGTGCGGGGTCCCTCGGCGCC 
ACGATCAACCTGATCCGCAAGAAACCTACCCATGAATTCAAGGGCCATGTCGAACTGGGCGCGGGCAGTTGG 
GACAATTACCGCTCCGAACTGGACGTCAGCGGCCCGCTGACCGAGTCCGGCAACGTCCGCGGCCGGGCGGTA 
GCCGCCTACCAGGACAAGCACTCGTTCATGGATCACTACGAGCGCAAAACCAGCGTCTATTACGGCATCCTC 
GAGTTCGATCTGAATCCCGACACCATGCTTACCGTCGGCGCCGACTATCAGGACAACGATCCCAAGGGATCG 
GGCTGGTCGGGCAGCTTCCCGCTCTTCGACAGCCAGGGCAACCGCAACGACGTCTCCCGCTCCTTCAACAAC 
GGAGCCAAGTGGAGCAGTTGGGAGCAGTACACCCGCACCGTCTTCGCCAACCTCGAGCACAATTTCGCCAAC 
GGCTGGGTCGGCAAGGTGCAGCTCGATCACAAGATCAACGGCTACCACGCGCCCCTCGGCGCGATCATGGGC 
GACTGGCCGGCACCGGACAACAGCGCCAAGATCGTTGCGCAGAAGTACACCGGCGAAACCAAGAGCAACTCG 
CTGGATATCTATCTCACCGGCCCCTTCCAGTTCCTCGGTCGCGAGCACGAGCTGGTGGTCGGCACCTCGGCT 
TCCTTCTCCCACTGGGAGGGCAAGAGCTACTGGAACCTGCGCAACTACGACAACACCACCGACGACTTCATC 
AACTGGGACGGCGATATAGGCAAGCCCGATTGGGGTACCCCCTCCCAGTACATCGATGACAAGACCCGCCAG 
TTGGGCAGCTACATGACCGCCCGCTTCAATGTGACCGATGACCTGAACCTGTTCCTAGGTGGACGCGTGGTC 
GACTACCGGGTAACCGGCCTGAATCCGACCATTCGCGAGTCCGGACGCTTCATTCCCTACGTCGGCGCGGTC 
TACGACCTGAACGATACCTACTCCGTCTACGCCAGCTATACCGACATCTTCATGCCGCAGGACAGTTGGTAT 
CGCGACAGCAGCAACAAACTGCTCGAACCCGACGAAGGCCAGAACTACGAGATCGGCATCAAGGGCGAATAT 
CTCGACGGACGACTCAATACCAGTCTCGCCTACTTCGAGATTCATGAGGAAAACCGCGCGGAGGAAGACGCC 
CTCTACAACAGCAAACCGACCAACCCCGCCATCACCTACGCCTACAAGGGCATCAAGGCCAAGACCAAGGGC 
TACGAGGCGGAAATCTCGGGTGAACTGGCGCCAGGCTGGCAGGTTCAGGCTGGCTATACCCACAAGATCATT 
CGCGACGACAGTGGCAAGAAGGTTTCCACCTGGGAGCCTCAGGACCAGTTGAGCCTCTACACCAGCTACAAG 
TTCAAGGGCGCCCTGGACAAGCTCACGGTCGGCGGCGGCGCCCGCTGGCAGGGCAAGAGCTGGCAGATGGTC 
TACAACAATCCCCGCAGCCGCTGGGAAAAGTTCTCCCAGGAAGACTACTGGCTGGTGGACCTGATGGCCCGC 
TACCAGATCACCGACAAGCTGTCGGCCAGCGTCAACGTCAACAACGTCTTCGACAAGACCTACTACACCAAC 
ATCGGTTTCTACACCTCGGCATCCTATGGCGATCCACGGAACCTGATGTTCAGCACTCGCTGGGACTTCTGA